LOC122343191


Basic Information

Item Value
gene id LOC122343191
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 23187316 ~ 23193862 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU45360
CGCTCTGTTTCTGCGTTCGCCTGCACGAGGAGCTGGCATgcggtgggggcatctctcgtcccgatgccccctgagatcgacgcGGGAGGAAATTTTGACagagtcgccgaataggccagaaggctgcaggggggcgtccaataggcagaccctgtctctctctttcatatcggacagggtcagccaaaGATGCCTCTCCACGGCCACAAGGGATGCCATAGACCGCCCATAGAGCGCGGGCGGTCTCCTTCATGACGCAGAGGCAGAGGTCAGCGGTCGGCGCAGTTCTGCGATTTCGCCGGAGCTGATCCCCTCTCCCTCGTcgacctctttcagcaggtcggcttgatATGCCTGCAGAACtgccatagtgtgcatgcaagatCCAGCCAGACCCGCTGCTGTGTACCCCTTAGCcaccaaagccgacgttgttctaaGCGGCtttgatggtaaggtcggagccttcaaagacaATGCTgcaccgggggacagataggtggTGAGAGACTGTTCCAaccggggcatcgccttatagccgtactccgcgactcccgccaTATTTCCATAATAACAAACAGCAGTGGGTgagaaaacacgagcggagtacggccttccccaggacctccagatcacgcccctccaggtgccgctagcatcaccaacgtgagcgttgaagtcctccaacaggacgatagagtccccagttggagcactttccagcactcttcccaaggactccaagaatgccagacCTGAAAGAGCAGAGTCGAGAACTGAATGAAATGAAGGATCAAAA
>XR_006250713.1
GTGACGTCCTAAAGCCGCGCCGCGCTCCTCAACTCGGCTGAAGAAAGGAAACGATCCACGTGACACTCTTATAAAGATGGCGTCcgttaaagaggagagtgaagacgTTCACATTGAAGAGACTTTCAGAGTCAAACATGAAGATCCTGAGGAACAAACCGCTcggctccttcttcaccatgacgaccgcattactgcagaagctgcatcgatccgtctg
>XR_006250714.1
GTGACGTCCTAAAGCCGCGCCGCGCTCCTCAACTCGGCTGAAGAAAGGAAACGATCCACGTGACACTCTTATAAAGATGGCGTCcgttaaagaggagagtgaagacgTTCACATTGAAGAGACTTTCAGAGTCAAACATGAAGATCCTGAGGAACAAACCGacCTGAAAGAGCAGAGTCGAGAACTGAATGAAATGAAGGATCAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45360 True 799 lncRNA 0.57 2 23192800 23193862
XR_006250713.1 False 220 lncRNA 0.51 3 23187316 23188795
XR_006250714.1 False 207 lncRNA 0.47 3 23187316 23193862

Neighbor

gene id symbol gene type direction distance location
LOC122343008 LOC107575457 coding upstream 3770 23168155 ~ 23183546 (+)
LOC122342997 LOC107572920,LOC107713771,LOC107575181,LOC107684374,LOC107677802 coding upstream 438696 22739960 ~ 22748620 (+)
LOC122342996 LOC107572920,LOC107713771,LOC107575181,LOC107684374,LOC107677802 coding upstream 480822 22695800 ~ 22706494 (+)
LOC122343101 NA coding upstream 497637 22685702 ~ 22689679 (+)
LOC122342965 NA coding upstream 565430 22613115 ~ 22621886 (+)
LOC122343131 NA coding downstream 32349 23226211 ~ 23229732 (+)
LOC122343152 NA coding downstream 158065 23351927 ~ 23375871 (+)
LOC122342330 LOC101883771,LOC101885620,LOC108191338 coding downstream 419616 23613478 ~ 23614930 (+)
LOC122342945 LOC107563545 coding downstream 439936 23633798 ~ 24144571 (+)
LOC122343046 NA coding downstream 891097 24084959 ~ 24091352 (+)
G30628 NA non-coding upstream 44237 23066254 ~ 23143079 (+)
G30637 LOC107741456,LOC107727338,LOC107685875,LOC107561645,LOC107563546,LOC107569100,LOC107670352 non-coding upstream 55611 23131314 ~ 23131705 (+)
G30624 NA non-coding upstream 60793 23006974 ~ 23126523 (+)
G30607 NA non-coding upstream 317613 22853481 ~ 22869703 (+)
G30609 NA non-coding upstream 325746 22858290 ~ 22861570 (+)
G30652 NA non-coding downstream 69735 23263597 ~ 23264466 (+)
G30653 NA non-coding downstream 70671 23264533 ~ 23264741 (+)
G30654 NA non-coding downstream 72004 23265866 ~ 23266302 (+)
G30658 NA non-coding downstream 80643 23274505 ~ 23282812 (+)
G30674 NA non-coding downstream 206194 23400056 ~ 23539037 (+)
LOC122342321 LOC107741609,LOC107575420,LOC107710255 other upstream 19309 23163695 ~ 23168007 (+)
G30632 NA other upstream 27560 23157559 ~ 23159756 (+)
G30636 LOC107575420,LOC107667978,LOC107563545,LOC107741456 other upstream 57127 23129106 ~ 23130189 (+)
LOC122342317 NA other upstream 407177 22777983 ~ 22780139 (+)
LOC122343019 LOC107705900 other upstream 504604 22661826 ~ 22682712 (+)
LOC122342976 usp15,LOC107685889 other downstream 923427 24117289 ~ 24131487 (+)
LOC122342990 NA other downstream 939188 24133050 ~ 24141446 (+)
LOC122343028 pacsin2,LOC107725788,LOC107569113 other downstream 1260408 24454270 ~ 24466400 (+)
LOC122343023 LOC107568558,LOC107685877,LOC107725785,LOC107728057 other downstream 1271592 24465454 ~ 24471450 (+)
LOC122343159 NA other downstream 1442490 24636352 ~ 24638654 (+)

Expression


Co-expression Network