LOC122343125


Basic Information

Item Value
gene id LOC122343125
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24639089 ~ 24646601 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU45653
AGCTATTCATTTACTACTTTTGCGTAAAATAGCACTATTATTTTATTGGCATGTATAtctttttagaatatatatatacacacacacacaaacatttatgtgcacatttattgtatttacaaatattaaaataagcgTTTGCGAGTCACTTTAAAAAACGTATCTGCTAAAAACCATAAATGAAGATCTGTTTCATAACCGTATGGTCCACAGGTCCTTTGAGATTGAGAAAGCAGAATGTCGCTCATCGTCCAGCTCCAGCCAGGAACACAAACAGCTCCTTTCACGACGCTGAACGATGCTCCTGTGCGTGTTCAACTACAACCGGTGACAGGAACCTCGACTCTTCAGGACCTTCAGGCATTTCTAAAAGGACGCCTGAAAGCCCTTGGGATGGTCCAGATTATTATCGGTCTGCTGACTCTTCTCTTTGGCATCGTGCATACAGTTTATGCAGAGTCCCTCTACATCTCTGTTGGTCTTCCTTACTGGGGATCTCTCATCtACATTACCTCAGGCTCACTCTGTATCGCTGCAGAATACAAGATTAATTCACCCTCCAATTTCTGTTTGGTACGTACTACAAACCACCTTACTCTTAAGGGTCCGAGCATCGTACTGGAAGTGCAGAAATACTTTACTATTCATCTTTATCATAACATATGatgcttaaaaatacattaccaGCCAGTCAAATTTCAGCAACTTATAACATCAAATCTCAAAGGCTGAGGAAACTTCAGAGTGTTTTGTGTAGCTGCTGACGTTCATGAAAACAAGACATCGTAAATCATGCTGGTGATCTAGAAGTTTTTACAGTGTTGTATAAAGTCTCTGGCGAGCTATTTCTAAAAGTAAATTTTCACACCATGTACTTTTCTTTGTCCATTAACTTGTTAACACAAAGTTTTAAAGTTCTTGCTAATTTATTCAtctgttttatgttgtttttctggatttaggtGAATGCTTTGCTTAAAGTGAACATTGTCTGTATTGTAAATGCAGGCATGGccattattttgcttttagtgGATTTCATTGTAGGTCCACTCAAACGCTGCTTTGATGATGACTGTACTAATGAAAGGAGAGAATATGAGGCTCTCTCAAAGGGAATCAGGGGTGTGTTGTTGGTAATCGTCACGCTTGAGTTCGTCATCTCCTTCTTTCTGTTGGTGTTTATCTGTAAAACCAACTCCTGCTGTTCTCCTCCTCAGTTTCAGATTACTCCGGTCGTACAGTCGTCTGATTCCAGGGCAATTCCTTAACAGATCCGAGGTAAGAGACGCATGTTaaaagatggcgccgttgaggtcagctgccgtcacgaccgctccgGCAAAActctctgtttttttgttaattgtttgtgttttaaatagtcTGCGCTGTtctctttatataagatggctattactaaatatgaccgagccactcttatatctattggtgtacaatgcacccacctttcgccgtttttaaacccggacccatgttggccgagcgagatcctgtcaaagacaaaaggacgcgacccgcaccggcgtccacgagggaaacgagctggcgtcaggaacaggttgagggcacgctcacaccgcgctcccctacctagtgtcctgttagccaacgtccagtctctgaaAACAAGCTcaatgacctcagggcaaggatcatgttccagagagacattcgggattgcaacctcctctgcttcaccgagacatggctgaacccagcggtaccggaccacgccatacaaccggccgagtttttctccgtttaccgcatggacagaacaatggagtcggggaagacacggggaggtggagtgtgtctgatggtgaacaaccgctggtgcgacagcgcgagcgttgttgCTCTCtcaggcaaagaggcgctacgggagcaaactagagtcacagtttcaacacagtgactctagaagcctgtggcagggactgagaagagtggagagcgcggatgcttctctggcagacgaactaaataacttttatgctcatttcgaggctgcagctaatcatgCTAATCACATTAGCGCCACTAgcatgccgagagagccggagaggaaatcgcgttcaccattttggagcacgacgtaaggagggcattcaggagagtgaacaccaggaaggcagcaggacctgacggcatcacaggtcgggttctgagagcctgtgctgaccagctagcaccggtgttcactgagatatttaatctctccctgaaacagtctgtagtctcctcgtgtttcaaagagtccatcattgttcctgtgttgaagaaacctcaaccatcttgccttaatgattaccgccctgtagctctgacgtctgtagtgatgaagtgcttcgagagactcgtcagagacttcatcaccgcatcactaccggacacactggacccactacagtttgcctaccgccatcacacacctcctccacacaaccacaagccacctggattttaggaaagggaactgtgaaaatgctgttcgagTTGagtgtgtggccactacaaactccaccaccatcattaaatttgctgacgacactgtcgtggtgggcctgatctccaacaacgatgagatggcctaccttcaggagatcaacaacctggagagatggtgtcaggagaacaatcttctcctgaacgtcagcaaaacaaaggagttaatagtggacttcagcacgaagcaggtgcgctcttaccatcccatcaagatcgacgggaccccagtggagagagtggacagtttccggtacctgggtgttcacatcatgcaggacctgtcttggtcctgtcacatcaacaccctggtgaagaaggcccggcagcgtctataccatcttgagcggcttaagggacttcagactcccatctcaggtgctcaggaacttttacacctgcaccatcgagagtgtcctgacgggaaacatcacctcctggtttggaaacagcaccatgcaggacgggcgagctcttcagaaggtggtgcggtcagctgagctccctgtgctgcagcacatctacaacaagcggtgctgtaccagggccaggaagatcgtggaagacctcagccatcccaacaatggactcttttctctgctgcgttcaggaaagcgctttcgttccctgaaggcaaacacagagagaatgaggaggagcttcttcccgcaggccattcggagtctgaaccagagaacacccagcacctaatcaccgggattcccatgttcacccctcttccccagatacccacttacaattggacaattacactggacaaaattgcactagtcactttacattggacattcacacagccactttatattttatattctatactttatatttgatacttttcatttaattttttaccttttaaatacgGGCgccatattttatactttatacttcaTTTTTTACCCTTTATACTGTGCActtctttgtatatatatatatatatatacagtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacagtatatagatagatagatatattttgttttcttttcccacgctggacggttgtataaaacatttcactgcatgtcgtaccatgtatgtatgtgtatgtgacaaataaaatttgaatttgtatttaagCGTAcgattaaatataaacaaggCTTCATGTGTTGGAAATGTGCAAAACAACGCTTACGTCATATTATCAATAAACAGGCAATCAAGCGAGGAAgctgatcattttttttccttgcagaTACCGGATTCCAGCAGCTCTTCCGTTCATCACCCGAGCAATCCATATGAATAAGTgtgttacatataaaaaaaatacacttacagAAGATACACTTCTCTTGAGATTGGGTTTACATATAGCTgaacatttcatatataaagATTTGtgatttacttatttttgtaaaaagaaaagtgcactg
>XM_043237478.1
AAAGCCAAAGCTCACGAGCTCGACGTGAAGTATTGCCTGCCTAGCTGAGCGGTTTCATTGTTGATTCTGATTCCAAATGATCAACTAGCAAAGGCCAGGGAATAAATCTACAGTGGATTAGATTCAATTAAATCTTTTTCAAACACTAAAAAAAGACCGTTTCAAAACAGTAGCACACGGTTTTTAACATATTCGGTGATATCTGACCACATCAGCCAAATATTAGCATGTTCTATCGTTCTCTGTCTACACCAGACACACACTAAAAACCTGACATTTAAGTATAAATTAAGAGGAGGACCTGTTTACTGATGAATGAAACGCTGATTTCAGAAGTCAGTGTATTCTTCTCCTTCTATGAACTTCCTGTGTCTGATGTCTACGCTAGTCGCTGACGCAACTCAGGGTTTCACAAGAAAACCAAAACCAGCAGGTCCTCTCGTTTCTCCACGCTGTAAACCAAAGCTCACAACTTCCCGTTTCATTCAGCGGTCCTTTGAGATTGAGAAAGCAGAATGTCGCTCATCGTCCAGCTCCAGCCAGGAACACAAACAGCTCCTTTCACGACGCTGAACGATGCTCCTGTGCGTGTTCAACTACAACCGGTGACAGGAACCTCGACTCTTCAGGACCTTCAGGCATTTCTAAAAGGACGCCTGAAAGCCCTTGGGATGGTCCAGATTATTATCGGTCTGCTGACTCTTCTCTTTGGCATCGTGCATACAGTTTATGCAGAGTCCCTCTACATCTCTGTTGGTCTTCCTTACTGGGGATCTCTCATCtACATTACCTCAGGCTCACTCTGTATCGCTGCAGAATACAAGATTAATTCACCCTCCAATTTCTGTTTGgtGAATGCTTTGCTTAAAGTGAACATTGTCTGTATTGTAAATGCAGGCATGGccattattttgcttttagtgGATTTCATTGTAGGTCCACTCAAACGCTGCTTTGATGATGACTGTACTAATGAAAGGAGAGAATATGAGGCTCTCTCAAAGGGAATCAGGGGTGTGTTGTTGGTAATCGTCACGCTTGAGTTCGTCATCTCCTTCTTTCTGTTGGTGTTTATCTGTAAAACCAACTCCTGCTGTTCTCCTCCTCAGTTTCAGATTACTCCGGTCGTACAGTCGTCTGATTCCAGGGCAATTCCTTAACAGATCCGAGaTACCGGATTCCAGCAGCTCTTCCGTTCATCACCCGAGCAATCCATATGAATAAGTgtgttacatataaaaaaaatacacttacagAAGATACACTTCTCTTGAGATTGGGTTTACATATAGCTgaacatttcatatataaagATTTGtgatttacttatttttgtaaaaagaaaagtgcactgaaaacaataaaaagtacattttttggaCTA

Function

GO:

id name namespace
GO:0043254 regulation of protein-containing complex assembly biological_process
GO:0044087 regulation of cellular component biogenesis biological_process
GO:0051128 regulation of cellular component organization biological_process
GO:0022607 cellular component assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0065008 regulation of biological quality biological_process
GO:0008154 actin polymerization or depolymerization biological_process
GO:1902903 regulation of supramolecular fiber organization biological_process
GO:0090066 regulation of anatomical structure size biological_process
GO:0051493 regulation of cytoskeleton organization biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0007015 actin filament organization biological_process
GO:0032970 regulation of actin filament-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030832 regulation of actin filament length biological_process
GO:0030833 regulation of actin filament polymerization biological_process
GO:0030029 actin filament-based process biological_process
GO:0033043 regulation of organelle organization biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0030041 actin filament polymerization biological_process
GO:0110053 regulation of actin filament organization biological_process
GO:0008064 regulation of actin polymerization or depolymerization biological_process
GO:0032535 regulation of cellular component size biological_process
GO:0032271 regulation of protein polymerization biological_process

KEGG:

id description
ko04612 Antigen processing and presentation
ko04672 Intestinal immune network for IgA production
ko05132 Salmonella infection
ko05310 Asthma
ko05320 Autoimmune thyroid disease
ko05321 Inflammatory bowel disease
ko05330 Allograft rejection

RNA

RNA id representative length rna type GC content exon number start site end site
TU45653 True 3995 TUCP 0.44 5 24640129 24646571
XM_043237478.1 False 1384 mRNA 0.42 8 24639089 24646601

Neighbor

gene id symbol gene type direction distance location
LOC122342946 NA coding upstream 19698 24607037 ~ 24619391 (+)
LOC122342982 NA coding upstream 33272 24595853 ~ 24605817 (+)
LOC122343010 NA coding upstream 57295 24577163 ~ 24581794 (+)
LOC122343032 NA coding upstream 64657 24568994 ~ 24574432 (+)
LOC122343045 nots,LOC107677818,LOC107569115,LOC107725781 coding upstream 136959 24498607 ~ 24502130 (+)
LOC122343105 NA coding downstream 2366 24648967 ~ 24653215 (+)
LOC122343093 NA coding downstream 15228 24661829 ~ 24665576 (+)
LOC122343104 NA coding downstream 21105 24667706 ~ 24672151 (+)
LOC122342991 LOC107685875,LOC107570416,LOC107671223,LOC107749047,LOC107728228,LOC107569032 coding downstream 33321 24679922 ~ 24687980 (+)
LOC122342420 LOC107667978,LOC107563545 coding downstream 124031 24770632 ~ 24782341 (+)
G30812 NA non-coding upstream 152202 24456022 ~ 24486887 (+)
LOC122343172 NA non-coding upstream 219521 24417843 ~ 24419568 (+)
G30819 NA non-coding upstream 324801 24310339 ~ 24314288 (+)
G30754 NA non-coding upstream 629198 24003642 ~ 24009891 (+)
G30751 LOC107671223,LOC107569100,LOC107575457,LOC107747635,LOC107679413,LOC107566978,LOC107670352 non-coding upstream 637525 23978432 ~ 24001564 (+)
G30877 NA non-coding downstream 68096 24714697 ~ 24714998 (+)
G31223 NA non-coding downstream 342266 24988867 ~ 24989274 (+)
G31226 NA non-coding downstream 667622 25314223 ~ 25314596 (+)
G31228 NA non-coding downstream 668578 25315179 ~ 25315553 (+)
G31380 NA non-coding downstream 1140779 25787380 ~ 25787901 (+)
LOC122343159 NA other upstream 435 24636352 ~ 24638654 (+)
LOC122343023 LOC107568558,LOC107685877,LOC107725785,LOC107728057 other upstream 167639 24465454 ~ 24471450 (+)
LOC122343028 pacsin2,LOC107725788,LOC107569113 other upstream 172689 24454270 ~ 24466400 (+)
LOC122342990 NA other upstream 497643 24133050 ~ 24141446 (+)
LOC122342976 usp15,LOC107685889 other upstream 507602 24117289 ~ 24131487 (+)
LOC122343086 NA other downstream 26290 24672891 ~ 24674412 (+)
G30882 NA other downstream 74823 24721424 ~ 24728447 (+)
LOC122342408 NA other downstream 97247 24743848 ~ 24767552 (+)
LOC122342771 ss18l1,LOC102784650 other downstream 988441 25635042 ~ 25688230 (+)
G31298 LOC107569336,LOC107690089,LOC107706811,LOC107090263,LOC107391191,LOC105928559,LOC103357353 other downstream 1047201 25693802 ~ 25695381 (+)

Expression


Co-expression Network