LOC122342328 (LOC107671223,LOC107685875,LOC107728228,LOC107749047,LOC107553362,LOC107574018,LOC107569032,LOC107575215)


Basic Information

Item Value
gene id LOC122342328
gene name LOC107671223,LOC107685875,LOC107728228,LOC107749047,LOC107553362,LOC107574018,LOC107569032,LOC107575215
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 23416891 ~ 23437015 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU45768
ACGTTTACACCTGATCGTTTTTTCTGATCGAAAAACCGTAACCGTATTAACCTAATcctgatttttaatgtttatgcggggacatacatgaacataaagagaaaacaaagacattttgagaagttgtctagaaactgaacgttttgatcaaagcaagtcttcagctgtggagcagaaagacacttccttattcatAGTCAGTGTTGAAGATCAAACTGTTCAGATCCatcatgaatgaaacacaaacatctggAGATGAAGAGTATTCTCCAGCCTGCAGctcagttcatcagaagagatcagaagcaGAGCCCAGCTGTGTTTCTATGAAGAGTGACAGGTCTATGGAACAGCCAGTGAAGTTTAAGAGTGAAGATTCACAGCCTGGACTTGGctcagttcatcagaagagatcagaagcagagtccagctgtgtgtctatgaagagaGAGACATCTGTGATTCAGTCTTTAGATTTTAAGAGAAGAGTCCTCGACACACTTAGATCAAATCTGCTGAAGAAgtttgagtgtctgtgtgaggaaCAGCAATGACGCAGAGAAACCCAACACTGCTGAATgagatctacacagagctctacatcacagagagtgagagaggagagatcaaTAATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGAGAAGCAACAGAGGACACAGCCATCAAATGCAGTGACATCTTCAGACCTTTACCTGGACAAGACAAAGACATCAGAACTGTGCTGACAAAGggagtcgctggcattggaaaaacagtctctgtgcagaagttcattctggactgggcCGAAGGGAAAGAGAATCAGGACGTCCAGCTcatatttccacttcctttcagagaaatcaacTTGATGAAGGACAAAACACTCAGTCTTTCAGATCTTCTTCACGACTTTTTCCCTGAaactaaagaaatggaaatatccagcgatgaatataaagtgttgttcatctttgatggtctggacgaGTGTCGTCTGTCTCTGGACTTCAAGAGTAAAGTGAAACTGTGTAATATATCTGAGTCAGCCTCAGTGgatgtgctgctgatgaacctgattgtg
>XM_043236117.1
ATGACGCAGAGAAACCCAACACTGCTGAATgagatctacacagagctctacatcacagagagtgagagaggagagatcaaTAATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGAGAAGCAACAGAGGACACAGCCATCAAATGCAGTGACATCTTCAGACCTTTACCTGGACAAGACAAAGACATCAGAACTGTGCTGACAAAGggagtcgctggcattggaaaaacagtctctgtgcagaagttcattctggactgggcCGAAGGGAAAGAGAATCAGGACGTCCAGCTcatatttccacttcctttcagagaaatcaacTTGATGAAGGACAAAACACTCAGTCTTTCAGATCTTCTTCACGACTTTTTCCCTGAaactaaagaaatggaaatatccagcgatgaatataaagtgttgttcatctttgatggtctggacgaGTGTCGTCTGTCTCTGGACTTCAAGAGTAAAGTGAAACTGTGTAATATATCTGAGTCAGCCTCAGTGgatgtgctgctgatgaacctgattgtggggaatctgcttcctgctctcatctggatcacctccagaccagcagcagctgatctcGTCTCTGAGTGCGTCCATCGAGTGACAGAGGTACGAGGCTTCAATGAGCCACAGAAGGAGGAATACTTCAGGAAGAGCATCAGTGATCAGAGTCTGGCCGACAGGATCATCTCACACCTGAAGTCCTCCAGGAGCCTCttcatcatgtgtcacatcccagtcttctgctggatctcagccactGTTCTTGAGAAGATCTTGAGTCGAGCAGAGACTGGAGAGATTCCTAAGActctcactcaaatgtacacacacttcctgatccttcagaccaacatcaaacatgagaaAGACTATGAGAAGAACGTGACAGATGAAGACATGATCCTCAAACTGGGGAAACTGGCTTTCCAGCAGCTTGTGAAAGGAAACCTGATCTTCTATGATGAAGACCTGAAAGAGTGTGGCATTGATGAGACAGAAGCATCAGTTTATTCAGGACtgtgcactcagatcttcagagaggagcTGGGATTGTTTCAGGGGAAAGTCTTCTGCTTCGTTCACCTGAGTCTTCAGGAACATCTAGCAGCTCTATATGCACACCTCTCCTTAACATTAAAGAAGATAAATGTGTTTGACCAAACCAAACACAGTCTATTGTCCaagatattttaccagaataaaTATAACTCACTATCTGAGCTGCATCAGAGATCTGTGAATAAGGCTCTAAAGAGTAAGAATGGACACCTGGATCTTTTTCTGCGGTTTCTTCTCGGTCTCCCAGTGGAGTCCAATCAGACTCTTTTAAGAAAACTACTgacacagacaggaagctgcTCCTACAACAAAGAGGAAACAGTTCAGTtcatcaaaaagaaaatcaggGAGAATCACTCTTCAGAgaaatccatcaatctgtttcactgtctgaatgaactgggtgatgattcactgatgcaGGAGATCCAGGGTTATCTGAAATCTGGAGGAATAAGAGAAATCAACCTATCCTCTTCTCAGTGGTCAGCTCTGGTTTATGTGTTGCTGACATCAGAGCAGAAGATGGATGTTTTTGATCTACAACAGTTTATTGGAGAACAACATACAGGAGAAGAAGTTCTTCAGTATCTGTTACCTGTGGTTAAAGAATCCAGATCAGTTCGGCTATGTGGATGCAATCTCACTGCTCAGTCTTGTAAAAGTttatcttcagttttacaatcctcaaactcaaacatcctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagctgctctctgaaggactgaagagtccaaactgtcatctggagattctgagGCTATGTGGATGCAGTCTCACTGCTCAGTCTTATAAAAGTttatcttcagttttacaatcctcaaactcaaacatcctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagctgctctctgaaggactgaagagtccaaactgtcatctggagattctgagattgtctggctgtatggtgacagaggaaggctgtggttatgtgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatcctggagattcaggagtgaagctgctctctgaaaaactggaggatccaaactgctcactaaataaactcaatgttgagcatggaggagaatccaggattacagcaggactCAAGAAATatgagtgttttttcacactggatccaaacacagcacacactaaaCTCagtctgtctgaggagaacagaaaggTGACACGTGTGTTTCAGTCTCagtcgtatcctgatcatccagacagatttgatctgtatcctcaggtgttgtgtagagagagtgtgtgtggacgctgttactgggagactgagtggagtggaggtgtgtttatatcagtgtcatataagaacatcagcaggaagggactgggtgaagagtgtgtgtttggatctaatgatcagtcctggagtttgatctGCTCTCCTCACAGTTACTCCTTCAGACACAATAAGATAGAGACTGATCtctctgtgaagcccatcatcatcagcagaagaagaacaggagagTATGAAGATATctacagagtaggagtgtatgtggatgagagcgcaggaactctgtccttcttcagcgtctctgactcaatgagactcatccacacagtccagaccacattcactcagacactctgtcctgggtttagagtttatttttat

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45768 False 1096 TUCP 0.42 4 23434980 23437015
XM_043236117.1 True 2820 mRNA 0.44 8 23416891 23435525

Neighbor

gene id symbol gene type direction distance location
LOC122343073 NA coding downstream 157572 23256365 ~ 23259319 (-)
LOC122342325 LOC107741456 coding downstream 166277 23240075 ~ 23250614 (-)
LOC122342324 NA coding downstream 179811 23230042 ~ 23237080 (-)
LOC122342323 NA coding downstream 197718 23201470 ~ 23219173 (-)
LOC122342322 NA coding downstream 219276 23196547 ~ 23197615 (-)
LOC122343107 LOC107566978,LOC107575457,LOC107561645,LOC107655025 coding upstream 288737 23725752 ~ 23727918 (-)
LOC122343128 LOC107728228,LOC107569032,LOC107685875,LOC107705465,LOC107574018 coding upstream 379834 23816849 ~ 23929534 (-)
LOC122342994 LOC107749047,LOC107685875,LOC107728228,LOC107570416,LOC107671223 coding upstream 770640 24207655 ~ 24220008 (-)
LOC122343156 LOC107674852,LOC105007321,LOC107551422,LOC103361099,LOC107732279,LOC107677819,LOC107725800 coding upstream 828334 24265349 ~ 24266607 (-)
LOC122342338 NA coding upstream 875827 24312842 ~ 24319112 (-)
G31012 NA non-coding downstream 19618 23391679 ~ 23397273 (-)
G30994 NA non-coding downstream 150033 23266625 ~ 23266858 (-)
G30993 NA non-coding downstream 150761 23265758 ~ 23266130 (-)
G30992 NA non-coding downstream 152675 23263732 ~ 23264216 (-)
G30967 LOC107561645 non-coding downstream 363271 23051748 ~ 23053620 (-)
LOC122343160 NA non-coding upstream 17262 23454277 ~ 23455816 (-)
G31020 LOC107728228 non-coding upstream 21712 23458727 ~ 23471751 (-)
G31024 NA non-coding upstream 37240 23474255 ~ 23474823 (-)
LOC122343190 NA non-coding upstream 57311 23494326 ~ 23496751 (-)
LOC122343181 NA non-coding upstream 237111 23674126 ~ 23675958 (-)
G30450 NA other downstream 1171731 22128454 ~ 22245160 (-)
G30457 NA other downstream 1200421 22216035 ~ 22216470 (-)
LOC122343153 NA other downstream 1633300 21387853 ~ 21783591 (-)
G30396 NA other downstream 1640085 21629617 ~ 21776806 (-)
LOC122342302 NA other downstream 1644492 21769124 ~ 21772399 (-)
G31017 NA other upstream 41510 23478525 ~ 23546369 (-)
G31050 NA other upstream 308471 23745486 ~ 23771768 (-)
G31091 kdm5a,LOC107710764,LOC107685890,LOC107693604 other upstream 673209 24110224 ~ 24110673 (-)
G31134 NA other upstream 867081 24304096 ~ 24497596 (-)
G31120 NA other upstream 869486 24306501 ~ 24495178 (-)

Expression


Co-expression Network