G31017


Basic Information

Item Value
gene id G31017
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 23478525 ~ 23546369 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU45850
CTGCATCGCccgaaaacaaaatgaattccCGCTCCGTTTGTGTTTGtttgtatccagactagatggtggatcagcacccagagattatgttcatcagagaccagaaaacctagatgcacccgtcgacagatcaccagatcctgatgcacacacacacacgcacacgcacacactaagtcatttacactacctgacacagctgcgtttaaaattgaactggaagttaagtgctgggcgtccggtcagaggagaactgaccccaactgagtctggtttctcccaaggtttttttttctccattctgtatgcatggggttttgtttccttgcgctgtcgcctctggcttgcttggttggggacacttaacttctagtgactatcgttgaattgactgcagagaccgtctctgcatttaataagaaattggtcactcgtcactactatacatccctgtcattatactgtacagtgctttgatgcaacctgtgttgttaaaagcgctatataaataaaaatgattgaaaaaatgATTGATGTGCATTACCTGGTTATCACGCTGTTTTAAAGTTCTGTTGTTTTTACGCCTGTAGGTGAGGGCTTCCTTGGAATGAACATCTTCAGCGCTATAACCACGGCATTGccatcattttacttttaatagatTTGGTTATAGCAGCGTTGAATTACTGCGGTGATTTTGACTGTTATTTGAACATCAAGTATGAGACTCTCTTAAAGGGAATCAGAGGTGTGTTGCTGATATTCTCCGTGCTTGAGTTCATcatctccatctgtctgtcagcGTTCGCCTGTAAAGCCGACGCCTGCTGCTGTCCTCCTCAGGTGCAGTTTGCTCAGGTTTTACCTCCACAGTTGTCTGATGTGGTTCGTTTCCAGGATCTGAACAGATCAGAGaTACCCGTGACCAGCAGCTCTTTCATTCATCAACATCCTGCAGACGTTCCTCCACAATACACTGAAAGCAAatatgaataagtgttccctcaaaaaaaaaggaacgtACATGTAACCCAGATTACTAGTGCATAAACAAGTGCATACTAGTACATTAACTCGCaatgatattaattaaataatagttgtttttttaaaaaaaaaaagaaccaaaacataaacatgactgtgaacaaaaaaatataaaatatcaaagttatAATTGTGACCAATAGCGCCTTCTTTCACTTCGCAATGAGGTCGCGGGTGAATGACGTCATAGGGGTCCGCCATCGCGCAATTTTTAGAGAGCAGAGGATTCGCTATCGTTCTCTTTCCTCGTGAGCCTCTCATGTGAGCAGATGTGAGATGCAGTTTCGGAAGATTCAAGGCACCAAATGAGAGAGATTAAGGTCAGAGAAGCTGAAGGCAATTGAGAGTGACGTCTGAAACAGGGTTCATCTGCAAATGTCCTGGTTCATTTGATGTACATGTATATTAGTTCCTTGGCCAGGTTTTCTTCCCTTTGTTCTGCTCTTGTTCCATGTGAGTCCCTTTCCTGGATGAATCGGCTGAAGTGAGAACTATTCTTGAACTGTCTCAACTCTTCATATAACTGCGGTGTGGAGTTGTACTGGCGAGCCTCCTTTAAGCAAATCTTTGAAACCTTTGCGTGAATTTCACCTGTTGGACAGACACAGGAACTAAACTTGCAGACCTTCAACTGGTAGGAGTGAAATTGCACAGTTCATTTTGTCCTGATCTGGAGTGGAGACTAAAGACTGAGATTACCATCAATTAATTGACATTTGAGACTGAATTTCTGAATcctcaggtttttatttttatttttatttcatccttttgtgtttgtaaattttaatttcttttattcattgtaACAATACAAATCAAATTTTGCTCTTACCCCAACTTGGCTTAAGTCTGTTCACTTCTGCtacattctctctctcctcctcggATTTAACCAAACCTTTGCACTAACTGGTCTATCATCAGAGTAGGTCCAAAATTTACATTACGATTATCACGGTTACATACAGGACAtgttgaaaaaatacatttccatacaTGGGAAACTATACTGAAGTATATTCATGGACCAagtatgaatataatttgaGGAATTTTAAAGGTACATGTCAAACCTGcagtacatttt
>TU45851
agaatggcatctacgctaatattagtcctgtttctttctcaatctgttttcacagtttgtatccagactagatggtggatcagcacccagagattatgttcatcagagaccagaaaacctagatgcacccgtcgacagatcaccagatcctgatgcacacacacacacgcacacgcacacactaagtcatttacactacctgacacagctgcgtttaaaattgaactggaagttaagtgctgggcgtccggtcagaggagaactgaccccaactgagtctggtttctcccaaggtttttttttctccattctgtatgcatggggttttgtttccttgcgctgtcgcctctggcttgcttggttggggacacttaacttctagtgactatcgttgaattgactgcagagaccgtctctgcatttaataagaaattggtcactcgtcactactatacatccctgtcattatactgtacagtgctttgatgcaacctgtgttgttaaaagcgctatataaataaaaatgattgaaaaaatgATTGATGTGCATTACCTGGTTATCACGCTGTTTTAAAGTTCTGTTGTTTTTACGCCTGTAGGTGAGGGCTTCCTTGGAATGAACATCTTCAGCGCTATAACCACGGCATTGccatcattttacttttaatagatTTGGTTATAGCAGCGTTGAATTACTGCGGTGATTTTGACTGTTATTTGAACATCAAGTATGAGACTCTCTTAAAGGGAATCAGAGGTGTGTTGCTGATATTCTCCGTGCTTGAGTTCATcatctccatctgtctgtcagcGTTCGCCTGTAAAGCCGACGCCTGCTGCTGTCCTCCTCAGGTGCAGTTTGCTCAGGTTTTACCTCCACAGTTGTCTGATGTGGTTCGTTTCCAGGATCTGAACAGATCAGAGaTACCCGTGACCAGCAGCTCTTTCATTCATCAACATCCTGCAGACGTTCCTCCACAATACACTGAAAGCAAatatgaataagtgttccctcaaaaaaaaaggaacgtACATGTAACCCAGATTACTAGTGCATAAACAAGTGCATACTAGTACATTAACTCGCaatgatattaattaaataatagttgtttttttaaaaaaaaaaagaaccaaaacataaacatgactgtgaacaaaaaaatataaaatatcaaagttatAATTGTGACCAATAGCGCCTTCTTTCACTTCGCAATGAGGTCGCGGGTGAATGACGTCATAGGGTCCGCCATCGCGCAATTTTTAGAGAGCAGAGGATTCGCTATCGTTCTCTTTCCTCGTGAGCCTCTCATGTGAGCAGATGTGAGATGCAGTTTCGGAAGATTCAAGCCACCGAAATGAGAGAGATTAAGGTCAGAGAAGCTGAAGGCAATTGAGAGTGACGTCTGAAACAGGGTTCATCTGCAAATGTCCTGGTTCATTTGATGTACATGTATATTAGTTCCTTGGCCAGGTTTTCTTCCCTTTATTCTGCTCTTGTTCCATGTGAGTCCCTTTCCTGGATGAATCGGCTGAAGTGAGAACTATTCTTGAACTGTCTCAACTCTTCATATAACTGCAGTGTGGAGTTGGACTGGCGAGCCCTCCTTTAAGCAAATCTTTGAAACCTTTGCGTGAATTTCACCTGTTGGACAGACACAGGAACTAAACTTGCAGACCTTCAACTGGTAGGAGTGAAATTGCACAGTTCATTTTGTCCTGATCTGGAGTGGAGACTAAAGACTGAGATTACCATCAATTAATTGACATTTGAGACTGAATTTCTGAATcctcaggtttttatttttatttttatttcatccttttgtgtttgtaaattttaatttcttttattcattgtaACAATACAAATCAAATTTTGCTCTTAC
>TU45855
GAGTCGTTTGAGTTCATCATCGTGTCCCTGACGGGTCAGATGTGGCATTTCGAGGCGTCAACGTTTGAGGAAAGAGAGCTCTGGGTTCAGGCCATTGAGAGCCAGATATTTGCCAGTCTACAGTCCTGTGAGAGCAGCAAGAACAAGGGCAAGGGCGTCCTCTACAACCATTGTAAAGACATAGGGGTGCACAAAGAGGAGGACTTCATGCTGCCATGCTTGACCCTCAAAACGCAAATCAAAGAAAAGGTCTGTGTCAAAGAAGAATCGGAGACATGGAAGTACGAGTCCTTCAGGTCAAGCTGATCAGCTCCGGGAACAGGAAAGAACCAGGGCAGGCATGGTCACGAACCACAGCCCACTCAGAGGAACCAATCATCTCACTGCAAGGGCTCAAGACTGGGA

Function

GO: NA

KEGG:

id description
ko04015 Rap1 signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion

RNA

RNA id representative length rna type GC content exon number start site end site
TU45850 True 2137 lncRNA 0.40 6 23478525 23493889
TU45851 False 1892 lncRNA 0.41 4 23486614 23489938
TU45855 False 405 TUCP 0.51 2 23497129 23546369

Neighbor

gene id symbol gene type direction distance location
LOC122343073 NA coding downstream 219206 23256365 ~ 23259319 (-)
LOC122342325 LOC107741456 coding downstream 227911 23240075 ~ 23250614 (-)
LOC122342324 NA coding downstream 241445 23230042 ~ 23237080 (-)
LOC122342323 NA coding downstream 259352 23201470 ~ 23219173 (-)
LOC122342322 NA coding downstream 280910 23196547 ~ 23197615 (-)
LOC122343107 LOC107566978,LOC107575457,LOC107561645,LOC107655025 coding upstream 179383 23725752 ~ 23727918 (-)
LOC122343128 LOC107728228,LOC107569032,LOC107685875,LOC107705465,LOC107574018 coding upstream 270480 23816849 ~ 23929534 (-)
LOC122342994 LOC107749047,LOC107685875,LOC107728228,LOC107570416,LOC107671223 coding upstream 661286 24207655 ~ 24220008 (-)
LOC122343156 LOC107674852,LOC105007321,LOC107551422,LOC103361099,LOC107732279,LOC107677819,LOC107725800 coding upstream 718980 24265349 ~ 24266607 (-)
LOC122342338 NA coding upstream 766473 24312842 ~ 24319112 (-)
G31024 NA non-coding downstream 3702 23474255 ~ 23474823 (-)
G31020 LOC107728228 non-coding downstream 6774 23458727 ~ 23471751 (-)
LOC122343160 NA non-coding downstream 22709 23454277 ~ 23455816 (-)
G31012 NA non-coding downstream 81252 23391679 ~ 23397273 (-)
G30994 NA non-coding downstream 211667 23266625 ~ 23266858 (-)
LOC122343181 NA non-coding upstream 127757 23674126 ~ 23675958 (-)
LOC122343201 NA non-coding upstream 181666 23728035 ~ 23731996 (-)
LOC122343194 NA non-coding upstream 186384 23732753 ~ 23743520 (-)
LOC122343184 NA non-coding upstream 220908 23767277 ~ 23779966 (-)
G31062 NA non-coding upstream 456497 24002866 ~ 24009615 (-)
LOC122342328 LOC107671223,LOC107685875,LOC107728228,LOC107749047,LOC107553362,LOC107574018,LOC107569032,LOC107575215 other downstream 41510 23416891 ~ 23437015 (-)
G30450 NA other downstream 1233365 22128454 ~ 22245160 (-)
G30457 NA other downstream 1262055 22216035 ~ 22216470 (-)
LOC122343153 NA other downstream 1694934 21387853 ~ 21783591 (-)
G31050 NA other upstream 199117 23745486 ~ 23771768 (-)
G31091 kdm5a,LOC107710764,LOC107685890,LOC107693604 other upstream 563855 24110224 ~ 24110673 (-)
G31134 NA other upstream 757727 24304096 ~ 24497596 (-)
G31120 NA other upstream 760132 24306501 ~ 24495178 (-)
LOC122342340 NA other upstream 777601 24323970 ~ 24327263 (-)

Expression


Co-expression Network