LOC122343181


Basic Information

Item Value
gene id LOC122343181
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 23674126 ~ 23675958 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU45886
AgttataaatgaatgttttacttCAGGAAATGGACATAGTCCACATTATAACATACCCTGGTATATAATGGAGCAGTGTACTCCAGTCTGAGTCTGtcgttgttttaaattatattttgtggtGTTCGTTAACAAAGCCCTTTCAGCAAAGAAAGACATGGGAGCTTCATGCTGAGTCAAAGTCTTCCAGTACAGAAGACGAATGTCATACAGAACATAAAAAGAAGACAATGAGTAGACGACAAATtgagaggaaaaagaaacatcacaaagttgactcatcatcctcatctgaATCAATCTCAACTCAGTCCTCTTCATCCCCTGCACCCTGAAAATCCAGCAAACATAAGGATAAAGACAAGAAAAGGAAAgtgaacaaaaaggaaaaatgcacaAGAGTCTTTTTTCCAGAGCAAGCCATGAACAGATACAAGAAGGTCTTGGGCTATTTGAAAGGCGTACTTCAAATGCGGTGTGGATAGAAAGACAATTGTGGATACTGCTGCAGTCTCAGAGCTCGAAGCATGTGACAATGAGGCACACAAACATCTGCCTGCCACATTACAAAGAGGACAGAAAC
>XR_006250703.1
TTTTATCTCTAAAATCAACTATACTTTACAAGCAGTTATATGGTATGCTTATCATGTGTGCTACAGTACAAATAgttataaatgaatgttttacttCAGGAAATGGACATAGTCCACATTATAACATACCCTGGTATATAATGGAGCAGTGTACTCCAGTCTGAGTCTGtcgttgttttaaattatattttgtggtGTTCGTTAACAAAGCCCTTTCAGCAAAGAAAGACATGGGAGCTTCATGCTGAGTCAAAGTCTTCCAGTACAGAAGACGAATGTCATACAGAACATAAAAAGAAGACAATGAGTAGACGACAAATtgagaggaaaaagaaacatcacaaagttgactcatcatcctcatctgaATCAATCTCAACTCAGTCCTCTTCATCCCCTGCACCCTGAAAATCCAGCAAACATAAGGATAAAGACAAGAAAAGGAAAgtgaacaaaaaggaaaaatgcacaAGAGTCTTTTTTCCAGAGCAAGCCATGAACAGATACAAGAAGGTCTTGGGCTATTTGAAAGGCGTACTTCAAATGCGGTGTGGATAGAAAGACAATTGTGGATACTGCTGCAGTCTCAGAGCTCGAAGCATGTGACAATGAGGCACACAAACATCTGCCTGCCACATTACAAAGAGGACAGAAACTCTCTGATTTTGCAGAGCG
>XR_006250704.1
aaagctaaaattaaattcttaGAAGATAAATCCAAGGACATCGAAAGCGAGAGAGATTTTCTGCGTAGGAGCCTGACTAACGCCCTTTCAGCAAAGAAAGACATGGGAGCTTCATGCTGAGTCAAAGTCTTCCAGTACAGAAGACGAATGTCATACAGAACATAAAAAGAAGACAATGAGTAGACGACAAATtgagaggaaaaagaaacatcacaaagttgactcatcatcctcatctgaATCAATCTCAACTCAGTCCTCTTCATCCCCTGCACCCTGAAAATCCAGCAAACATAAGGATAAAGACAAGAAAAGGAAAgtgaacaaaaaggaaaaatgcacaAGAGTCTTTTTTCCAGAGCAAGCCATGAACAGATACAAGAAGGTCTTGGGCTATTTGAAAGGCGTACTTCAAATGCGGTGTGGATAGAAAGACAATTGTGGATACTGCTGCAGTCTCAGAGCTCGAAGCATGTGACAATGAGGCACACAAACATCTGCCTGCCACATTACAAAGAGGACAGAAACTCTCTGATTTTGCAGAGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45886 False 583 lncRNA 0.40 3 23674145 23675795
XR_006250703.1 True 675 lncRNA 0.39 3 23674126 23675868
XR_006250704.1 False 547 lncRNA 0.41 3 23674126 23675958

Neighbor

gene id symbol gene type direction distance location
LOC122343073 NA coding downstream 414807 23256365 ~ 23259319 (-)
LOC122342325 LOC107741456 coding downstream 423512 23240075 ~ 23250614 (-)
LOC122342324 NA coding downstream 437046 23230042 ~ 23237080 (-)
LOC122342323 NA coding downstream 454953 23201470 ~ 23219173 (-)
LOC122342322 NA coding downstream 476511 23196547 ~ 23197615 (-)
LOC122343107 LOC107566978,LOC107575457,LOC107561645,LOC107655025 coding upstream 49794 23725752 ~ 23727918 (-)
LOC122343128 LOC107728228,LOC107569032,LOC107685875,LOC107705465,LOC107574018 coding upstream 140891 23816849 ~ 23929534 (-)
LOC122342994 LOC107749047,LOC107685875,LOC107728228,LOC107570416,LOC107671223 coding upstream 531697 24207655 ~ 24220008 (-)
LOC122343156 LOC107674852,LOC105007321,LOC107551422,LOC103361099,LOC107732279,LOC107677819,LOC107725800 coding upstream 589391 24265349 ~ 24266607 (-)
LOC122342338 NA coding upstream 636884 24312842 ~ 24319112 (-)
LOC122343190 NA non-coding downstream 177375 23494326 ~ 23496751 (-)
G31024 NA non-coding downstream 199303 23474255 ~ 23474823 (-)
G31020 LOC107728228 non-coding downstream 202375 23458727 ~ 23471751 (-)
LOC122343160 NA non-coding downstream 218310 23454277 ~ 23455816 (-)
G31012 NA non-coding downstream 276853 23391679 ~ 23397273 (-)
LOC122343201 NA non-coding upstream 52077 23728035 ~ 23731996 (-)
LOC122343194 NA non-coding upstream 56795 23732753 ~ 23743520 (-)
LOC122343184 NA non-coding upstream 91319 23767277 ~ 23779966 (-)
G31062 NA non-coding upstream 326908 24002866 ~ 24009615 (-)
G31063 NA non-coding upstream 327734 24003692 ~ 24010050 (-)
G31017 NA other downstream 127757 23478525 ~ 23546369 (-)
LOC122342328 LOC107671223,LOC107685875,LOC107728228,LOC107749047,LOC107553362,LOC107574018,LOC107569032,LOC107575215 other downstream 237111 23416891 ~ 23437015 (-)
G30450 NA other downstream 1428966 22128454 ~ 22245160 (-)
G30457 NA other downstream 1457656 22216035 ~ 22216470 (-)
LOC122342302 NA other downstream 1901727 21769124 ~ 21772399 (-)
G31050 NA other upstream 69528 23745486 ~ 23771768 (-)
G31091 kdm5a,LOC107710764,LOC107685890,LOC107693604 other upstream 434266 24110224 ~ 24110673 (-)
G31134 NA other upstream 628138 24304096 ~ 24497596 (-)
G31120 NA other upstream 630543 24306501 ~ 24495178 (-)
LOC122342340 NA other upstream 648012 24323970 ~ 24327263 (-)

Expression


Co-expression Network