G31091 (kdm5a,LOC107710764,LOC107685890,LOC107693604)


Basic Information

Item Value
gene id G31091
gene name kdm5a,LOC107710764,LOC107685890,LOC107693604
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24110224 ~ 24110673 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU45934
ACCTCCATGACCTGCAGGAACTTGTCTTCTGAGGGCGGGTGCGTGGCCTGCAGGATCCTCCAGATGTGCTGTGTCTCATCTAGAGACACTTCCAGCAGGTCTCCCTCCATCATCAGCTCCTCCAGCTGGGCCTTGGCAGCCGGAGAGAGCTCCAGCACCGGAGGCTCCAGGCTGCGCGGCACCAGCGGCGTCTTCCTGGGCTGCTTGCGCGGCGCCGCCGGGTCTGAGGAGGTCAACAGAGATCCGGCTAGTTCAGGTCTACAGAGGCCCTTTTGCTCCTGTGAATCTCCTCATCACAGAACAGATATGGCTTCACTTCTCCTGAGTC

Function

symbol description
kdm5a Predicted to enable dioxygenase activity and metal ion binding activity. Predicted to act upstream of or within chromatin organization. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in ankylosing spondylitis. Orthologous to human KDM5A (lysine demethylase 5A).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: lysine-specific demethylase 5A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45934 True 328 TUCP 0.61 2 24110224 24110673

Neighbor

gene id symbol gene type direction distance location
LOC122343128 LOC107728228,LOC107569032,LOC107685875,LOC107705465,LOC107574018 coding downstream 180690 23816849 ~ 23929534 (-)
LOC122343107 LOC107566978,LOC107575457,LOC107561645,LOC107655025 coding downstream 382306 23725752 ~ 23727918 (-)
LOC122343073 NA coding downstream 850905 23256365 ~ 23259319 (-)
LOC122342325 LOC107741456 coding downstream 859610 23240075 ~ 23250614 (-)
LOC122342324 NA coding downstream 873144 23230042 ~ 23237080 (-)
LOC122342994 LOC107749047,LOC107685875,LOC107728228,LOC107570416,LOC107671223 coding upstream 96982 24207655 ~ 24220008 (-)
LOC122343156 LOC107674852,LOC105007321,LOC107551422,LOC103361099,LOC107732279,LOC107677819,LOC107725800 coding upstream 154676 24265349 ~ 24266607 (-)
LOC122342338 NA coding upstream 202169 24312842 ~ 24319112 (-)
ckap4 NA coding upstream 366323 24476996 ~ 24479914 (-)
LOC122343108 LOC107677819,LOC107725800 coding upstream 374689 24485362 ~ 24492499 (-)
G31082 LOC107710764 non-coding downstream 9357 24100450 ~ 24100867 (-)
G31072 NA non-coding downstream 73473 24036349 ~ 24036751 (-)
G31063 NA non-coding downstream 100174 24003692 ~ 24010050 (-)
G31062 NA non-coding downstream 100609 24002866 ~ 24009615 (-)
G31064 NA non-coding downstream 103022 24006244 ~ 24007202 (-)
G31090 NA non-coding upstream 12139 24122812 ~ 24125661 (-)
G31088 NA non-coding upstream 16274 24126947 ~ 24127908 (-)
LOC122343167 NA non-coding upstream 101394 24212067 ~ 24215572 (-)
G31109 LOC107656690 non-coding upstream 139163 24249836 ~ 24426069 (-)
G31115 NA non-coding upstream 188107 24298780 ~ 24540339 (-)
G31050 NA other downstream 338456 23745486 ~ 23771768 (-)
G31017 NA other downstream 563855 23478525 ~ 23546369 (-)
LOC122342328 LOC107671223,LOC107685875,LOC107728228,LOC107749047,LOC107553362,LOC107574018,LOC107569032,LOC107575215 other downstream 673209 23416891 ~ 23437015 (-)
G30450 NA other downstream 1865064 22128454 ~ 22245160 (-)
G30457 NA other downstream 1893754 22216035 ~ 22216470 (-)
G31134 NA other upstream 193423 24304096 ~ 24497596 (-)
G31120 NA other upstream 195828 24306501 ~ 24495178 (-)
LOC122342340 NA other upstream 213297 24323970 ~ 24327263 (-)
LOC122342407 LOC101068103,LOC105418166,LOC106522608,LOC108412963,LOC105419408,LOC108431938,LOC107395447,LOC106674638 other upstream 643383 24754056 ~ 24760786 (-)
G31314 NA other upstream 1448367 25559040 ~ 25561198 (-)

Expression


Co-expression Network