G31109 (LOC107656690)


Basic Information

Item Value
gene id G31109
gene name LOC107656690
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24249836 ~ 24426069 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU45956
GTGCAGATAACTGTTAAAATTGCCAATTTGCTCAGTGTGACAGGAATGAGTTTTCCAGTGTCGTTTCAGGTCTGTGTGATACGTGAAGCTGGTGTCACACTGAGGACActtgtaaggcttctctccagtgtgaattctcatgtgaaTCTTAAGATTTCCTTTAGCCgtgaagctctttccacactgaggacAGGTGAAGGGTTTCTCTCCGGAGTGAGTTCTCATGTGATTCTCAAAGTTTCCTTTGTGTgagaaactcttcccacactgctGACATATAAAACAGTTCTCTCCCGAGTGACTCTTCATGTGAAGATCAAGGTGTCCTTTACACCTGAAACTCTTTTCACACAGATCACAAACAAACggcttctctcccgtgtgaATTGTCATGTGATCATTGAGGTACTTCTTCTgtttaaaactctttccacactgagagcagatGAACGTTTTCTCTCCGCTGTGAATTCCTGTGTGAAATGTAagattttcctttcttttgtaGCTCTTCCCACACAGTTCACAAGTGTAAGgtctctctccagtgtggagTTTGGGTTTTCTAGTCGATGAGTAAGAACTAGATTCTTCTCCAGTCATGAAATCATTATGTTTGTCAAACTGATTTTTCTCTTCTATTACTTTGGATTCTTGTCTATCCTCTTTCAGCGTCATCAGGTCTGGAGTgaaaagaaacataaaacaagACAACACCAGTTTAAAAGCACCAAGACGTGAAAGCTTTTAGACAGTAAAACGTCACATTTAACCACTAGATTATACATCcactaaacaaataaagcacctcttaaaataaatcaaacataaaTCAGGATCAGgcagtttatttaatttcaataatttgaTATAAACCTTGACGTAAACTACCGCCAAAGATTTATGGGAGCAAGCAAATATTTG
>TU45957
GTGCAGATAACTGTTAAAATTGCCAATTTGCTCAGTGTGACAGGAATGAGTTTTCCAGTGTCGTTTCAGGTCTGTGTGATACGTGAAGCTGGTGTCACACTGAGGACActtgtaaggcttctctccagtgtgaattctcatgtgaaTCTTAAGATTTCCTTTAGCCgtgaagctctttccacactgaggacAGGTGAAGGGTTTCTCTCCGGAGTGAGTTCTCATGTGATTCTCAAAGTTTCCTTTGTGTgagaaactcttcccacactgctGACATATAAAACAGTTCTCTCCCGAGTGACTCTTCATGTGAAGATCAAGGTGTCCTTTACACCTGAAACTCTTTTCACACAGATCACAAACAAACggcttctctcccgtgtgaATTGTCATGTGATCATTGAGGTACTTCTTCTgtttaaaactctttccacactgagagcagatGAACGTTTTCTCTCCGCTGTGAATTCCTGTGTGAAATGTAagattttcctttcttttgtaGCTCTTCCCACACAGTTCACAAGTGTAAGgtctctctccagtgtggagTTTGGGTTTTCTAGTCGATGAGTAAGAACTAGATTCTTCTCCAGTCATGAAATCATTATGTTTGTCAAACTGATTTTTCTCTTCTATTACTTTGGATTCTTGTCTATCCTCTTTCAGCGT
>TU45958
TCCATTGTGAATAAAAGTTGGGCTTGCAAGTTTAGAAATCtgaattttattagttttatagaGAATGTCACTGTGATCTTTCCTGACATAGCTGTAATAATTACTAAGATGGCACATTCAGATGGGAATAAAATCACTGAGCTCTAGTAATACTTTATTGCACCTCTCCATGTAAAACTAGTCCTGTCTAAATAGGACTCAACACATGAGGTTTGATACGAATGTGTTCATTGATCTGATCTCAACTCAATCATCTTTCTTCAGAGGAAATGTTCAGGTGATTGTTGTAACACTATCTTCCTCCGTGTGGCATGAAGTTGGGAAACTCTCTCCAGAATGAGTCTGCATATGACGCTTGAGGTTTGTGTGATGCGTGAAGCTGGTGTCACACTGAGGACActtgtaaggcttctctccagtgtgaactctcatgtgaGTCTTAAAGTTTCCTTTAGCCgtgaagctctttccacactgaggacagGTGAAGGGTTTCTCTCCGGAGTGAGTTCTCATGTGATTCTCAAAGTTTCCTTTGTGTgagaaactcttcccacactgctGACATATAAAACAGTTCTCTCCCGAGTGACTCTTCATGTGAAGATCAAGGTGTCCTTTACACCTGAAACTCTTTTCACACAGATCACAAACAAACggcttctctcccgtgtgaATTGTCATGTGATCATTGAGGTACTTCTTCTgtttaaaactctttccacactgagagcagatGAACGTTTTCTCTCCGCTGTGAATTCCTGTGTGAAATGTAagattttcctttcttttgtaGCTCTTCCCACACAGTTCACAAGTGTAAGgtctctctccagtgtggagTTTGGGTTTTCTAGTCGATGAGTAAGAACTAGATTCTTCTCCAGTCATGAAATCATTATGTTTGTCAAACTGATTTTTCTCTTCTATTACTTTGGATTCTTGTCTATCCTCTTTCAGCGTCATCAGGTCTGGAGTgaaaagaaacataaaacaagACAACACCAGTTTAAAAGCACCAAGACGTGAAAGCTTTTAGACAGTAAAACGTCACATTTAACCACTAGATTATACATCcactaaacaaataaagcacctcttaaaataaatcaaacataaaTCAGGATCAGgcagtttatttaatttcaataatttgaTATAAACCTTGACGTAAACTACCGCCAAAGATTTATGGGAGCAAGCAAATATTTGTGTTAATCTGTAGCTGGGGAGTTAACTATTAGCTTTGTCAACTATATGTTCAAGTTACATTTGGGCATTTACCAGAGTCTACCAAAAAATCACTAATTAAGACAACAGAaccaatcaaaaccaacaaaagagcaataatatgCAGTAATAGTGACTAACGTGAGTCTATTGCATAAGTATTAAAACCCTTATCTGACGTTACCCTATGGCAAATTAATCTGAATGGATATGATTTGGAAACGCTCACACATCttaataaaaagtctaaaagctaaaagaaaaaaaagctgtagaGCTCAGAAACAGCATCAATCTGGTGAAGATCTGGCCTTTTGGCCAAACTGAGCAATCGCTGGACTTGGGTTGGAGTGGTGCCTAAGAAGCCGATGGTCGCTCTAGCTGAGCTCCATCATCATATGTAGAGATAGagaaacatacacaaacatttgcaaaggagcacctaaagtgccctcagACTCTGAGAAACAATGTTCTGTGGACGGATCAACCTCGATTTCAAGCCTCTTGTTAGAAAGGAGACCTGCAGAGTTGTCTTCTTAAACGTTCCTCAGATCTCTACTAACAGGCACTCGACACATCAGTAGCAGGGTTACATGCTGACTTCTCCCAGCAATCGTCTCTGACGTGAACAACAGTGTGATGACGCACAAGACTCCAGGATCATCATCCCTTTGGTTTCCCACATTCCTCAGAAGAgcttttatgttcaacagaaACACTTGTAAATGACAACTTTTAGTTTTTtcgaagaaataaataaatagcttttaagttaataaaatgagacacaaagagaaaaataacGCACTACTTTTGGCACCTctacttaccctcatgttgttccaaacaaataaggggtatgaatactttcgcTAGACACCGTCCTCAGCATAGCTTTGGTGTTTTGGACAGAAGCTCaatcacagaaattaattttctcacaggtttgatggtcttgtgtgtgtgtgtgtgtgtggcgtgagcacacacatttgtataatattatgtGATGCTtggaaatgaacatttttatatgtatgtctTTTTATATGACGCTAAAGCAGAATGTGGCTAACCTGATAGCTTGGTGATTATAGTTCACATTTATATCCATGTGCGTGAAccaaaaaattacacacaaacagcagaTTCACCGTTTCTGATGTtagcaaataaacattttcagaagAGGAGATCTTTGTGATTGGTTAGCTGTCCTGTCAATCAAATACTGGAACATTACTTCATTGTGCGCACACTTCCGTTAAACTCTACCTCAGAAAATAATATCCAACTCTTCCAGAAAGAGTTAAACCAACCTGTTTCTTCCATCTTCACGTCTCCTCGCTCCTCTTTAAGAAACGATATCTCCGCTCGTTTCTCCTCAAGATCTTCTGGTTCATCTTCGATCTTCACgtcttctctctcctccttgATAAAGGCCATCTTTATAACGGCGCCTCGGTCTCTTCAGCGAGGGTTTGAGATGAGAATAAATATCTGATCTTGATATGAGGACTCCTTCACTTGAAGGGATCCTGTCTTTTATCCCGTGTACGGCCCAGACCGACGAATCCTTGAGAGCTCCATTCGTTCTGA

Function

NR:

description
PREDICTED: gastrula zinc finger protein XlCGF8.2DB-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45956 False 924 lncRNA 0.39 2 24251456 24259462
TU45957 False 675 lncRNA 0.42 2 24251705 24259462
TU45958 True 2835 lncRNA 0.39 3 24249836 24426069

Neighbor

gene id symbol gene type direction distance location
LOC122342994 LOC107749047,LOC107685875,LOC107728228,LOC107570416,LOC107671223 coding downstream 29828 24207655 ~ 24220008 (-)
LOC122343128 LOC107728228,LOC107569032,LOC107685875,LOC107705465,LOC107574018 coding downstream 320302 23816849 ~ 23929534 (-)
LOC122343107 LOC107566978,LOC107575457,LOC107561645,LOC107655025 coding downstream 521918 23725752 ~ 23727918 (-)
LOC122343073 NA coding downstream 990517 23256365 ~ 23259319 (-)
LOC122342325 LOC107741456 coding downstream 999222 23240075 ~ 23250614 (-)
ckap4 NA coding upstream 50927 24476996 ~ 24479914 (-)
LOC122343108 LOC107677819,LOC107725800 coding upstream 59293 24485362 ~ 24492499 (-)
LOC122342346 LOC107581033 coding upstream 116069 24542138 ~ 24544170 (-)
LOC122342998 NA coding upstream 132063 24558132 ~ 24564000 (-)
LOC122342983 NA coding upstream 156898 24582967 ~ 24593953 (-)
LOC122343167 NA non-coding downstream 34264 24212067 ~ 24215572 (-)
G31088 NA non-coding downstream 121928 24126947 ~ 24127908 (-)
G31090 NA non-coding downstream 124175 24122812 ~ 24125661 (-)
G31082 LOC107710764 non-coding downstream 148969 24100450 ~ 24100867 (-)
G31072 NA non-coding downstream 213085 24036349 ~ 24036751 (-)
LOC122343161 LOC107743936,LOC101883431 non-coding upstream 19460 24445529 ~ 24448290 (-)
G31124 NA non-coding upstream 27392 24453461 ~ 24464894 (-)
G31121 NA non-coding upstream 31345 24457414 ~ 24458259 (-)
G31155 NA non-coding upstream 39294 24465363 ~ 24466556 (-)
G31161 NA non-coding upstream 87887 24513956 ~ 24552855 (-)
G31091 kdm5a,LOC107710764,LOC107685890,LOC107693604 other downstream 139163 24110224 ~ 24110673 (-)
G31050 NA other downstream 478068 23745486 ~ 23771768 (-)
G31017 NA other downstream 703467 23478525 ~ 23546369 (-)
LOC122342328 LOC107671223,LOC107685875,LOC107728228,LOC107749047,LOC107553362,LOC107574018,LOC107569032,LOC107575215 other downstream 812821 23416891 ~ 23437015 (-)
G30457 NA other downstream 2033366 22216035 ~ 22216470 (-)
LOC122342407 LOC101068103,LOC105418166,LOC106522608,LOC108412963,LOC105419408,LOC108431938,LOC107395447,LOC106674638 other upstream 327987 24754056 ~ 24760786 (-)
G31314 NA other upstream 1132971 25559040 ~ 25561198 (-)
G31394 NA other upstream 1747630 26173699 ~ 26175249 (-)
G31400 LOC102197881 other upstream 1898410 26324479 ~ 26325236 (-)
G31463 LOC107665166,LOC107752513,LOC107549841 other upstream 2940343 27366412 ~ 27367649 (-)

Expression


Co-expression Network