G31115


Basic Information

Item Value
gene id G31115
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24298780 ~ 24540339 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU45967
AAAGAACACAATAATCATCAGACTGAACAATGCAAAGACAGTAAATGATGAAGTGTAGTGATTTAATAGAGaatgtaaaacattcattagGTTCTTCTGCATTTAGCAGCACATTCAGAGATGAGATGTGATCTAAACAGAGATCTGTGACCTTCCTGAAAGATGAGCGAGTCCCACCCGATCATGACCTCTGTCATAGATGCTGTAAAACTGAGAGAGGAAAACATCTCCTAGAATCCAGACGGGGCCAGCAGGAGACGGGACGTCTATAGACTGAAAGCCACTGAAGCAGATCTCCTTATTGTTCAGCACCCTCCACATTATTGATCAGGAAAGACACTACAGGAAGACTGCTGATCCTCACACAGTCTAGAAGGTACTGAAACCTCTCCGACAGCGCTGGGTGTTGCTCCAATAAACTGCTGGAGGAGCAGGATGTCTCTGGCTGGGCCGCCGATCAGAGAGGTTCCTGTGTCCACTATGGCTTGGCAGCCTTGAGCGCTACGATAGCAGAAACTCAGAGCTCCCTGAACCCTCACACTAGACAcgacacacacaacacactcagCTCTGTGTCAAACGAGTGTTTTAATGGACGTGAACTCACTCACGTGTCTAATCTGATCTGCCAGTAGCCCTTCTGAGTGACCGGAGCCCAGTTGATGGGAGAAACGAAGCGGCTTTCATCCACACCCCCGAACAGCAGCTCCCCTCCGAAGCCAGAAACGTTGTTCCTGTAAGAGTTACCAGAACATACCGTGAAGATCAGCATCAGTTCAAGGTTGAGGTTTGGTACTTAGAAAATAATGCTAGGCCATAAAACATCATGCTCAATTTTGCTGTCCCTCTTCTCCATGAGAGTTGGTCCCCAAAAGATCTGGTTATGGATTCTAAACCTTGTATTTGTTGAGTAGATCCAATCATCTCTTTGAAGCCC
>TU45968
AAAGAACACAATAATCATCAGACTGAACAATGCAAAGACAGTAAATGATGAAGTGTAGTGATTTAATAGAGaatgtaaaacattcattagGTTCTTCTGCATTTAGCAGCACATTCAGAGATGAGATGTGATCTAAACAGAGATCTGTGACCTTCCTGAAAGATGAGCGAGTCCCACCCGATCATGACCTCTGTCATAGATGCTGTAAAACTGAGAGAGGAAAACATCTCCTAGAATCCAGACGGGGCCAGCAGGAGACGGGACatgtttttctctctctcagttttaCAGCATCTATGACAGAGGTC
>TU45970
CCTAATATTAAACAACTATTTCAATCTTACAGCAGAAACCAATCTGTGGAAAATACAGTCTAGAATATATGTCATCTGAACAAGAAATAATGTTCCAGTGCTGAAAAGAACACAATAATCATCAGACTGAACAATGCAAAGACAGTAAATGATGAAGTGTAGTGATTTAATAGAGaatgtaaaacattcattagGTTCTTCTGCATTTAGCAGCACATTCAGAGATGAGATGTGATTTAATAGAGaatgtaaaacattcattagGTTCTTCTGCATTTAGCAGCACATTCAGAGATGAGATGTGATCTAAACAGAGATCTGTGACCTTCCTGAAAGATGAGCGAGTCCCACCCGATCATGACCTCTGTCATAGATGCTGTAAAACTGAGAGAGGAAAACATCTCCTAGAATCCAGACGGGGCCAGCAGGAGACGGGACatgtttttctctctctcagttttaCAGCATCTATGACAGAGGTC

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0043627 response to estrogen biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0016900 oxidoreductase activity, acting on the CH-OH group of donors, disulfide as acceptor molecular_function
GO:0047057 vitamin-K-epoxide reductase (warfarin-sensitive) activity molecular_function

KEGG:

id description
ko03010 Ribosome
ko04141 Protein processing in endoplasmic reticulum

RNA

RNA id representative length rna type GC content exon number start site end site
TU45967 True 937 lncRNA 0.47 3 24500852 24502175
TU45968 False 308 lncRNA 0.41 2 24298780 24502175
TU45970 False 482 lncRNA 0.38 3 24298780 24540339

Neighbor

gene id symbol gene type direction distance location
LOC122343156 LOC107674852,LOC105007321,LOC107551422,LOC103361099,LOC107732279,LOC107677819,LOC107725800 coding downstream 32173 24265349 ~ 24266607 (-)
LOC122342994 LOC107749047,LOC107685875,LOC107728228,LOC107570416,LOC107671223 coding downstream 78772 24207655 ~ 24220008 (-)
LOC122343128 LOC107728228,LOC107569032,LOC107685875,LOC107705465,LOC107574018 coding downstream 369246 23816849 ~ 23929534 (-)
LOC122343107 LOC107566978,LOC107575457,LOC107561645,LOC107655025 coding downstream 570862 23725752 ~ 23727918 (-)
LOC122343073 NA coding downstream 1039461 23256365 ~ 23259319 (-)
LOC122342346 LOC107581033 coding upstream 1799 24542138 ~ 24544170 (-)
LOC122342998 NA coding upstream 17793 24558132 ~ 24564000 (-)
LOC122342983 NA coding upstream 42628 24582967 ~ 24593953 (-)
LOC122343065 NA coding upstream 86725 24627064 ~ 24631306 (-)
LOC122342349 NA coding upstream 423635 24963974 ~ 24981623 (-)
LOC122343167 NA non-coding downstream 83208 24212067 ~ 24215572 (-)
G31088 NA non-coding downstream 170872 24126947 ~ 24127908 (-)
G31090 NA non-coding downstream 173119 24122812 ~ 24125661 (-)
G31082 LOC107710764 non-coding downstream 197913 24100450 ~ 24100867 (-)
G31072 NA non-coding downstream 262029 24036349 ~ 24036751 (-)
G31165 LOC107685875,LOC107671223,LOC107570416,LOC107728228,LOC107749047 non-coding upstream 13079 24553418 ~ 24683082 (-)
G31179 NA non-coding upstream 95922 24636261 ~ 24639737 (-)
G31189 NA non-coding upstream 127299 24667638 ~ 24669294 (-)
G31192 NA non-coding upstream 147189 24687528 ~ 24688132 (-)
G31194 NA non-coding upstream 157568 24697907 ~ 24710380 (-)
G31091 kdm5a,LOC107710764,LOC107685890,LOC107693604 other downstream 188107 24110224 ~ 24110673 (-)
G31050 NA other downstream 527012 23745486 ~ 23771768 (-)
G31017 NA other downstream 752411 23478525 ~ 23546369 (-)
LOC122342328 LOC107671223,LOC107685875,LOC107728228,LOC107749047,LOC107553362,LOC107574018,LOC107569032,LOC107575215 other downstream 861765 23416891 ~ 23437015 (-)
G30457 NA other downstream 2082310 22216035 ~ 22216470 (-)
LOC122342407 LOC101068103,LOC105418166,LOC106522608,LOC108412963,LOC105419408,LOC108431938,LOC107395447,LOC106674638 other upstream 213717 24754056 ~ 24760786 (-)
G31314 NA other upstream 1018701 25559040 ~ 25561198 (-)
G31394 NA other upstream 1633360 26173699 ~ 26175249 (-)
G31400 LOC102197881 other upstream 1784140 26324479 ~ 26325236 (-)
G31463 LOC107665166,LOC107752513,LOC107549841 other upstream 2826073 27366412 ~ 27367649 (-)

Expression


Co-expression Network