G31388


Basic Information

Item Value
gene id G31388
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25817031 ~ 25817564 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU46343
CCCCGTATAGTGGATGGTACTCCAGTGTACACTGTGagaaagctcctggatgtcaGACGCCGTGGTCGGGGTTTCCAGtttctggtggactgggagggttacggACCGGAGGAGAGGTGTTGGATACCGGCCCGGGACATTCTGGATCAGACACTGGTTGAGGACTTCCGCCGGCGACGAGGTGGGCTCCCCCTAGGGGCGCCAGGTGGCGCTCCTGGGAGGGGGGGTactgtcatgacttcagtctgatcagtttgtttttgtttttctgtcaaacagtctgccatgtgcttgtgtgttccCGCCCCATTGTTATCTCATTAATCACTctagctgccttctcacctgtggctcgtTAGCTCCTTAATTGCTCCCCCTACTTAAGctccctttgtttgcagtcttgtgtctgatcGTTGTGGTGTGAGGATGCTACCAGTACCTCCAGTCCAGTCTAGTCCTGTCCTGTCCAGTCTGTCTAGGCTCCAAGTTCA
>TU46344
CCCCGTATAGTGGATGGTACTCCAGTGTACACTGTGagaaagctcctggatgtcaGACGCCGTGGTCGGGGTTTCCAGtttctggtggactgggagggttacggACCGGAGGAGAGGTGTTGGATACCGGCCCGGGACATTCTGGATCAGACACTGGTTGAGGACTTCCGCCGGCGACGAGGTGGGCTCCCCCTAGGGGCGCCAGGTGGCGCTCCTGGGAGGGGGGGTactgtcatgacttcagtctgatcagtttgtttttgtttttctgtcaaacagtctgccatgtgcttgtgtgttccCGCCCCATTGTTATCTCATTAATCACTctagctgccttctcacctgtggctcgtTAGCTCCTTAATTGCTCCCCCTACTTAAG
>TU46346
CCCCCTTAACCCTGTGAGGTCTACCCCGACTCCCCTTCCCCCCCGTATAGTGGATGGTACTCCAGTGTACACTGTGagaaagctcctggatgtcaGACGCCGTGGTCGGGGTTTCCAGtttctggtggactgggagggttacggACCGGAGGAGAGGTGTTGGATACCGGCCCGGGACATTCTGGATCAGACACTGGTTGAGGACTTCCGCCGGCGACGAGGTGGGCTCCCCCTAGGGGCGCCAGGTGGCGCTCCTGGGAGGGGGGGTactgtcatgacttcagtctgatcagtttgtttttgtttttctgtcaaacagtctgccatgtgcttgtgtgttccCGCCCCATTGTTATCTCATTAATCACTctagctgccttctcacctgtggctcgtTAGCTCCTTAATTGCTCCCCCTACTTAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46343 True 494 lncRNA 0.55 1 25817071 25817564
TU46344 False 385 lncRNA 0.56 1 25817071 25817455
TU46346 False 425 lncRNA 0.56 1 25817031 25817455

Neighbor

gene id symbol gene type direction distance location
col9a3 col9a3,LOC107713563,LOC107598802,LOC107680173,LOC107719903,LOC107677638,LOC106571930 coding upstream 88380 25711662 ~ 25728651 (+)
ogfr ogfr,LOC107706812,LOC107690085,LOC107713566,LOC107677637,LOC107598801 coding upstream 107394 25703831 ~ 25709637 (+)
lsm14b lsm14b,LOC107748998,LOC107569639 coding upstream 182223 25631361 ~ 25634808 (+)
l1camb LOC107661992,LOC107746188,LOC107598812,LOC107568828 coding upstream 207186 25573077 ~ 25609845 (+)
zmp:0000000926 LOC107754864,LOC107661991,LOC107568831,LOC104958731 coding upstream 263198 25517396 ~ 25553833 (+)
trnas-uga NA coding downstream 7547 25825111 ~ 25825192 (+)
trnak-uuu_1 NA coding downstream 9060 25826624 ~ 25826696 (+)
trnas-uga_1 NA coding downstream 9597 25827161 ~ 25827242 (+)
trnak-uuu_2 NA coding downstream 9788 25827352 ~ 25827424 (+)
trnas-aga_2 NA coding downstream 10592 25828156 ~ 25828236 (+)
G31380 NA non-coding upstream 29130 25787380 ~ 25787901 (+)
G31228 NA non-coding upstream 501478 25315179 ~ 25315553 (+)
G31226 NA non-coding upstream 502435 25314223 ~ 25314596 (+)
G31223 NA non-coding upstream 827757 24988867 ~ 24989274 (+)
G30877 NA non-coding upstream 1102033 24714697 ~ 24714998 (+)
LOC122342592 NA non-coding downstream 98825 25916389 ~ 25917199 (+)
trnas-aga_27 NA non-coding downstream 115617 25933181 ~ 25933262 (+)
trnas-uga_25 NA non-coding downstream 118594 25936158 ~ 25936240 (+)
trnak-uuu_26 NA non-coding downstream 120083 25937647 ~ 25937719 (+)
trnas-aga_28 NA non-coding downstream 120888 25938452 ~ 25938533 (+)
G31384 NA other upstream 3406 25812631 ~ 25813625 (+)
G31298 LOC107569336,LOC107690089,LOC107706811,LOC107090263,LOC107391191,LOC105928559,LOC103357353 other upstream 121650 25693802 ~ 25695381 (+)
LOC122342771 ss18l1,LOC102784650 other upstream 128801 25635042 ~ 25688230 (+)
LOC122342408 NA other upstream 1049479 24743848 ~ 24767552 (+)
G30882 NA other upstream 1088584 24721424 ~ 24728447 (+)
LOC122342372 LOC107752513,LOC107665166,LOC107549841,LOC107753705,LOC107575738 other downstream 1479972 27297536 ~ 27371196 (+)
LOC122342494 znf384,LOC107671195,LOC107582054 other downstream 1539248 27356812 ~ 27358163 (+)
LOC122342806 znf384l,LOC107665159,LOC107549826,LOC108433737,LOC107554334,LOC106569967,LOC107754029,LOC107752514,LOC105892077 other downstream 1543279 27360843 ~ 27406088 (+)
G31614 capn5a,capn5,LOC107665347,LOC107660684,LOC107600851,LOC106535735 other downstream 2389394 28206958 ~ 28216248 (+)
G31619 capn5,capn5a,LOC107713096,LOC107600851,LOC107660684 other downstream 2401169 28218733 ~ 28221417 (+)

Expression


Co-expression Network