LOC122342372 (LOC107752513,LOC107665166,LOC107549841,LOC107753705,LOC107575738)


Basic Information

Item Value
gene id LOC122342372
gene name LOC107752513,LOC107665166,LOC107549841,LOC107753705,LOC107575738
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27297536 ~ 27371196 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU46402
CGACGATCTGGAGAAAGAGGACTCCAGTTACATTCAGGAGCACAAGCTCAAACGCAAGATGATGAAGATCTATGACAAACTGTGTGAGCTGAAGGGCTGTAACACACTTACGGGTCGAGTGATCGAGCAGAAGATTCCTTACAGTGGGACACGCTACCCAGAGATCAACAAAAAGATCGAACGCTACATTAACAGTCCAGAAGCTCTTCACAACCCGCCGGACTACACCGATATCCTGAAGGTGGTTCAGCGCACTAACGAACGCTACAAACTCATCCTCACTCGCAAACAGACCACACAGATCGCTCAAGAAGCCTTCAGAGAGACGGGCAACAAACTCCAGGAGAGACGCCATCTGGACATGGTCTACAACTTCGGCTCCCATCTCACCGATTCCTTCAAACCCACGTTAGACCCCGCTCTCACTGATCCAACACTAAACCGCAAACTCCGCTCAAACAGAGACGTGGCTCTGAGCAGCCTGGAGGAGGTGATCACCAAATACGCTATTAAACAGGAA
>TU46403
AACGACTTTGAGGTAAAGAGGTTTTATCAGGTGTGATCTTTAGCGTTGTTTTTGTGGTCTCAGATGATGAAGATCTATGACAAACTGTGTGAGCTGAAGGGCTGTAACACACTTACGGGTCGAGTGATCGAGCAGAAGATTCCTTACAGTGGGACACGCTACCCAGAGATCAACAAAAAGATCGAACGCTACATTAACAGTCCAGAAGCTCTTCACAACCCGCCGGACTACACCGATATCCTGAAGGTGGTTCAGCGCACTAACGAACGCTACAAACTCATCCTCACTCGCAAACAGACCACACAGATCGCTCAAGAAGCCTTCAGAGAGACGGGCAACAAACTCCAGGAGAGACGCCATCTGGACATGGTCTACAACTTCGGCTCCCATCTCACCGATTCCTTCAAACCCACGTTAGACCCCGCTCTCACTGATCCAACACTAAACCGCAAACTCCGCTCAAACAGAGACGTGGCTCTGAGCAGCCTGGAGGAGGTGATCACCAAATACGCTATTAAACAGGAA
>TU46404
agaaaaagagGCACTTAATGGGCAGCAGAGcgaaagcaaagaaaaagagacggaggaaaaggaagaaaaagaggaggaagaggaggaggaagatgaagaagaggatGATTCCTCTGATCCTGACATTGAAGAGGAGATCCAAGCCAGTCAAAAACAAGCTGGTCCGGATGACGATGAAGAGGATGTGGAAGAGGAGCCGTTGAACAACAGTGACAATGACCAGCCGATGGATGAGAACTCTCCTCCCTCGATCAAATCATCCGCCCAGGACACGGAGGAGGACCAGGGAGATGAAGACCAGCGCTCTCCGGCCAGCAGCACACACGAGACGGAAACTAACACGAACCACGTGGCCGTGGAGCAAAGCCCTCCGTTCATACAGACCTCAGATCT
>XM_043236150.1
ATGGACAGCATTGTGATCTCGGACGACGACGATGAAGAAGCGTCCACATCTGCCTCCGGCGTGTCTGTTCCCACGCCACGAACTGCCAGCCGCAAACCCCGTGAAGAATCAGCTGCCGCTCCGACGCACATCACGCGCAGTCTCCGTTACGCCTCCGCGAAGAAGGATGTTCATGTCCTGCAGTTTGTGGAGCATTGCTCTAAACACTCTCAAGACCATCCCGAGGTCGTGACCTACCTCCAGAGCAGATACTCAAAGGCGCTGCCGACCTTCCTGACGTCGGTGGAGTTTCGTAACACTCTGGGCCGCTGCCTCACACGCAGCCCAGGCCAACACCGGCAAAACCTTCTGTCTACATCAATGAACTCTGCACCGTTCTCAAACAGCACACGGCTCGAAGAGGAGCTCCATACAGCCCGTGCCTCCCAGACGAAACCTGAGCAGAAGAGCAACGGCACAAACATACAGGAGCAGGAGCGGCttaaagaagaagaggagaaacGAGAGGATGAAGAGAAACGAAGAAAACCAAAAGGGCTTCTTGAGGAGACAGATAGCATACCTGGAAAACCTGTTGAAGGTGTACAACGAGAGATCCGGCGGCTTCAGGAGCGAGAGTTGAGCGCCGACGATCTGGAGAAAGAGGACTCCAGTTACATTCAGGAGCACAAGCTCAAACGCAAGATGATGAAGATCTATGACAAACTGTGTGAGCTGAAGGGCTGTAACACACTTACGGGTCGAGTGATCGAGCAGAAGATTCCTTACAATGATAAACCAAGCTCTTACGATATAAagATCGAACGCTACATTAACAGTCCAGAAGCTCTTCACAACCCGCCGGACTACACCGATATCCTGAAGGTGGTTCAGCGCACTAACGAACGCTACAAACTCATCCTCACTCGCAAACAGACCACACAGATCGCTCAAGAAGCCTTCAGAGAGACGGGCAACAAACTCCAGGAGAGACGCCATCTGGACATGGTCTACAACTTCGGCTCCCATCTCACCGATTCCTTCAAACCCAGTAATTCAATTCGGTTACGCTCCATCTCAGATACAGAACCGTTAGACCCCGCTCTCACTGATCCAACACTAAACCGCAAACTCCGCTCAAACAGAGACGTGGCTCTGAGCAGCCTGGAGGAGGTGATCACCAAATACGCTATTAAACAGGAAGACATAGAGGTTTTAGAGGAAATGAGGAAGagacaagagagagacagacagaaaaaggATGACGATGAAGAGGATGTGGAAGAGGAGCCGTTGAACAACAGTGACAATGACCAGCCGATGGATGAGAACTCTCCTCCCTCGATCAAATCATCCGCCCAGGACACGGAGGAGGACCAGGGAGATGAAGACCAGCGCTCTCCGGCCAGCAGCACACACGAGACGGAAACTAACACGAACCACGTGGCCGTGGAGCAAAGCCCTCCGTTCATACAGACCTCAGATCTTATGCCTATCGGATGGCGGAGCTCAGCTTCCTCCGATCACAGTAAAAGCGACACCGCCGAGACGGTCTCCACCAATCAGGACGCTCCGTCAGCCACGATGAGATCAGCCAACTGCAGCCCGCTACCTCAAACGAGCCCTCTGCTGATCGACGAGATGGGCAACTACAAGAAGAGGAAACGGTCCTCCGCCGAACACCGGACCACTGCCTCCAACGGGGACTGCACACAGGACAGTGATATTCCTCTGGATATGGGTGTGATCTTCTGTCCTGAGGAGGATGATGTGCCCAGGACGATGACTTCCTCTCAGCTCATGGTCAGAAGCTCACGATCCACGCCACCACCCAAGAGGAATAAGGTGAACGTGGCGACTCAGTGCGACCGGAGGAAGTGA

Function

NR:

description
PREDICTED: death domain-associated protein 6-like

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0016605 PML body cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46402 False 520 TUCP 0.50 4 27366230 27367990
TU46403 False 525 TUCP 0.49 3 27366351 27367990
TU46404 False 393 lncRNA 0.52 3 27297536 27369182
XM_043236150.1 True 1860 mRNA 0.53 10 27364018 27371196

Neighbor

gene id symbol gene type direction distance location
trnav-uac_5 NA coding upstream 73550 27223914 ~ 27223986 (+)
LOC122342370 NA coding upstream 86934 27207736 ~ 27210602 (+)
trnav-aac_9 NA coding upstream 155912 27141552 ~ 27141624 (+)
trnav-cac_2 NA coding upstream 158410 27139054 ~ 27139126 (+)
trnav-aac_8 NA coding upstream 159628 27137836 ~ 27137908 (+)
LOC122342913 LOC107752534,LOC107665115,LOC107549827 coding downstream 48347 27419543 ~ 27436028 (+)
tcf19l LOC107752517,LOC107665168,LOC107549845,LOC107666307,LOC107753767,LOC107554348 coding downstream 65237 27436433 ~ 27442200 (+)
pvrl2l pvrl2l,LOC107549846,LOC107752518,LOC107665153,LOC107753776,LOC107554349,LOC107666334 coding downstream 89285 27460481 ~ 27599258 (+)
atp1a3a atp1a3a,LOC107665151,LOC107753791,LOC108433742,LOC107666333,LOC107549859,LOC102779181 coding downstream 251476 27622672 ~ 27649545 (+)
LOC122342440 LOC107753802,LOC107554351,LOC107666349,LOC100537384 coding downstream 293909 27665105 ~ 27711406 (+)
G31438 NA non-coding upstream 64104 27233096 ~ 27233432 (+)
G31429 NA non-coding upstream 99270 27197887 ~ 27198266 (+)
G31428 LOC107574244,LOC107838241 non-coding upstream 212829 27084317 ~ 27084707 (+)
trnay-gua_43 NA non-coding upstream 296681 27000769 ~ 27000855 (+)
trnar-acg_39 NA non-coding upstream 297245 27000219 ~ 27000291 (+)
LOC122343300 NA non-coding downstream 236591 27607787 ~ 27619661 (+)
G31520 NA non-coding downstream 341050 27712246 ~ 27713190 (+)
G31540 NA non-coding downstream 426777 27797973 ~ 27798209 (+)
G31543 NA non-coding downstream 452210 27823406 ~ 27823705 (+)
G31549 NA non-coding downstream 541121 27912317 ~ 27951998 (+)
G31384 NA other upstream 1483911 25812631 ~ 25813625 (+)
G31298 LOC107569336,LOC107690089,LOC107706811,LOC107090263,LOC107391191,LOC105928559,LOC103357353 other upstream 1602155 25693802 ~ 25695381 (+)
LOC122342771 ss18l1,LOC102784650 other upstream 1609306 25635042 ~ 25688230 (+)
LOC122342408 NA other upstream 2529984 24743848 ~ 24767552 (+)
G30882 NA other upstream 2569089 24721424 ~ 24728447 (+)
G31614 capn5a,capn5,LOC107665347,LOC107660684,LOC107600851,LOC106535735 other downstream 835762 28206958 ~ 28216248 (+)
G31619 capn5,capn5a,LOC107713096,LOC107600851,LOC107660684 other downstream 847537 28218733 ~ 28221417 (+)
G31636 NA other downstream 913831 28285027 ~ 28320694 (+)
LOC122342379 myo7aa,myo7a,LOC107660700,LOC107735900,LOC107600840 other downstream 926106 28297302 ~ 28317582 (+)
G31649 NA other downstream 979157 28350353 ~ 28353226 (+)

Expression


Co-expression Network