LOC122342494 (znf384,LOC107671195,LOC107582054)


Basic Information

Item Value
gene id LOC122342494
gene name znf384,LOC107671195,LOC107582054
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27356812 ~ 27358163 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU46406
ATCGGCGTCAGCACAACAAGGACAAGCCGTATAAGTGTCACCACTGTAACCGTGGTTATGTAGACGCAGCCAGCCTGGAGGTTCATCTGTCCACGCACACGGTCAAGCACGATAAACTCTACTCCTGTGGTTTATGCAACCGCACATATACCTCGGAAACGTATCTGATGAAGCACATGCGAAAACACGCCCCAGATATGCTTCCGTCTCCACCCGGATCCAACCATCAGAATCGCAGCCCCGGCCGCGCAGGAGGAAGTAGCTCGGATGGAGACGGGCAGAGCCAAGCCGAGAGGAACAATGCCTTCATCCAGCCGGTCGGTGTGCCGTGCATATTCGACCTGAACCAGTACAAGCCAGTACCTTCTGCAGACGTGCAGTATAAAACTGTCAGTGTGTCTGACATCTCCCCTCACAAAGACCTCTGCATCACCGTGGAGGCTTCTGCCATACAGGTGGAGCACCTAAACTCATAAGGAATCCCACCAAACTTTTGTAATTGACGAGGTCCACACAGAGCTGCGGACACAGGAGGACTTTTCTTACTCGATacctttttatttgtatgaagGAGCAAGTGGATTTAAATGGACACAGCTGAAGAAACAgactttgggt
>XM_043236327.1
TACAAATAGTGTGAAAGGGGTTTATCTTAAATATTagagagttttttttatgtcacaaCATTAAACATTGATACAGCAACCACCCATatgcttttgaactttctattaatcaaagaatcctgaaaaaaggtTTCTTCAAAAAAccactgtttttaataataaatgaaaatgttctggAGCACCAAAGTGATCACGTGTCTCTGATGAATGGAATAATatctgctgaaaatacagctttgccatcacaggattaaattatattagaaaataaagttcattagaaaacatacatttttaatagcagtaatatttaacagtataatatataaacggTAGAATATAGAGATGAATAGATCTTTCCATCGTTTCGATTCAGATTCCAGTTTAACTTTCTGCAGGATGGGGGcaattcaatttatatttactCCTGAACTGAAAGGGAACCAGTTGTCAATGATTCTCTAATTCATTCAGTAACATTTTTGGCTTTTGTCTCACGCTAAAATATTGTACACCCTCAAAACACTTCAAACTCCTAATGggttgttttatgatgtttggTTTGGAGAAACATGGCCTGACTAAATGTTGAATTGtcactttaacatttttctcaATCTTTTACAGTCTCATCGGCGTCAGCACAACAAGGACAAGCCGTATAAGTGTCACCACTGTAACCGTGGTTATGTAGACGCAGCCAGCCTGGAGGTTCATCTGTCCACGCACACGGTCAAGCACGATAAACTCTACTCCTGTGGTTTATGCAACCGCACATATACCTCGGAAACGTATCTGATGAAGCACATGCGAAAACACGCCCCAGATATGCTTCCGTCTCCACCCGGATCCAACCATCAGAATCGCAGCCCCGGCCGCGCAGGAGGAAGTAGCTCGGATGGAGACGGGCAGAGCCAAGCCGAGAGGAACAATGCCTTCATCCAGCCGGTCGGTGTGCCGTGCATATTCGACCTGAACCAGTACAAGCCAGTACCTTCTGCAGACGTGCAGTATAAAACTGTCAGTGTGTCTGACATCTCCCCTCACAAAGACCTCTGCATCACCGTGGAGGCTTCTGCCATACAGGTGGAGCACCTAAACTCATAAGGAATCCCACCAAACTTTTGTAATTGACGAGGTCCACACAGAGCTGCGGACACAGGAGGACTTTTCTTACTCGATacctttttatttgtatgaagGAGCAAGTGGATTTAAATGGACACAGCTGAAGAAACAgactttgggtttttttttttNTGGTT

Function

symbol description
znf384 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

NR:

description
PREDICTED: zinc finger protein 362-like isoform X3

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46406 False 618 TUCP 0.51 2 27357443 27358147
XM_043236327.1 True 1265 mRNA 0.41 2 27356812 27358163

Neighbor

gene id symbol gene type direction distance location
trnav-uac_5 NA coding upstream 132826 27223914 ~ 27223986 (+)
LOC122342370 NA coding upstream 146210 27207736 ~ 27210602 (+)
trnav-aac_9 NA coding upstream 215188 27141552 ~ 27141624 (+)
trnav-cac_2 NA coding upstream 217686 27139054 ~ 27139126 (+)
trnav-aac_8 NA coding upstream 218904 27137836 ~ 27137908 (+)
LOC122342913 LOC107752534,LOC107665115,LOC107549827 coding downstream 61380 27419543 ~ 27436028 (+)
tcf19l LOC107752517,LOC107665168,LOC107549845,LOC107666307,LOC107753767,LOC107554348 coding downstream 78270 27436433 ~ 27442200 (+)
pvrl2l pvrl2l,LOC107549846,LOC107752518,LOC107665153,LOC107753776,LOC107554349,LOC107666334 coding downstream 102318 27460481 ~ 27599258 (+)
atp1a3a atp1a3a,LOC107665151,LOC107753791,LOC108433742,LOC107666333,LOC107549859,LOC102779181 coding downstream 264509 27622672 ~ 27649545 (+)
LOC122342440 LOC107753802,LOC107554351,LOC107666349,LOC100537384 coding downstream 306942 27665105 ~ 27711406 (+)
G31438 NA non-coding upstream 123380 27233096 ~ 27233432 (+)
G31429 NA non-coding upstream 158546 27197887 ~ 27198266 (+)
G31428 LOC107574244,LOC107838241 non-coding upstream 272105 27084317 ~ 27084707 (+)
trnay-gua_43 NA non-coding upstream 355957 27000769 ~ 27000855 (+)
trnar-acg_39 NA non-coding upstream 356521 27000219 ~ 27000291 (+)
G31443 NA non-coding downstream 5425 27363588 ~ 27410595 (+)
LOC122343300 NA non-coding downstream 249624 27607787 ~ 27619661 (+)
G31520 NA non-coding downstream 354083 27712246 ~ 27713190 (+)
G31540 NA non-coding downstream 439810 27797973 ~ 27798209 (+)
G31543 NA non-coding downstream 465243 27823406 ~ 27823705 (+)
G31384 NA other upstream 1543187 25812631 ~ 25813625 (+)
G31298 LOC107569336,LOC107690089,LOC107706811,LOC107090263,LOC107391191,LOC105928559,LOC103357353 other upstream 1661431 25693802 ~ 25695381 (+)
LOC122342771 ss18l1,LOC102784650 other upstream 1668582 25635042 ~ 25688230 (+)
LOC122342408 NA other upstream 2589260 24743848 ~ 24767552 (+)
G30882 NA other upstream 2628365 24721424 ~ 24728447 (+)
LOC122342806 znf384l,LOC107665159,LOC107549826,LOC108433737,LOC107554334,LOC106569967,LOC107754029,LOC107752514,LOC105892077 other downstream 2680 27360843 ~ 27406088 (+)
G31614 capn5a,capn5,LOC107665347,LOC107660684,LOC107600851,LOC106535735 other downstream 848795 28206958 ~ 28216248 (+)
G31619 capn5,capn5a,LOC107713096,LOC107600851,LOC107660684 other downstream 860570 28218733 ~ 28221417 (+)
G31636 NA other downstream 926864 28285027 ~ 28320694 (+)
LOC122342379 myo7aa,myo7a,LOC107660700,LOC107735900,LOC107600840 other downstream 939139 28297302 ~ 28317582 (+)

Expression


Co-expression Network