G31503 (pvrl2l,LOC107549846,LOC107665153,LOC107554349,LOC107752518,LOC107753776,LOC107666334)


Basic Information

Item Value
gene id G31503
gene name pvrl2l,LOC107549846,LOC107665153,LOC107554349,LOC107752518,LOC107753776,LOC107666334
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27539355 ~ 27615941 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU46508
TCTGTCCAGTCAGGATAAATTCATGTGTGTGGCAAGGTTTGATTGAATCTGCATATTTGATTTGTATGCCAAATTgctgtacagtatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgtgtgtgtaaatatctAGTGTTGACATCTTGTCATGTTGAGGGGTGAGAGAGCAAACAGTTGTCAGTGCAAAAAGTTTGTGCGCGAACGTCAATCCGTACTGTACTTTCGTAGCAGGCCGTGTGCCAGTCACTAACTAGTGTGCGTCTGGGAAGCTACATCTGCTGAACGCGCAGGATTCCCGCCTGTCTAAATCACAGACTCAAGGCAGCTGAGGTTATTCTCATGTCTACTCCGGGCTATTATACTACATCTGCTTTATATTTGGTGTTGGCCATAGCTGACCACTACGTCTGTTATTTACAGTACCGATAAATAACACTTTTCTCTCACCGGATTTCTCGatgataaatacatacatatacagtatatatatatctcacacaCAGGACACGTCACGTCAAGATACACACCATCAACACCTCACAGGATAGCACTGGTTTCCATCCATAGTATATAACAAACTGGACAAAAAGAAGAGTATAGTTTGTTCTCACAAGTTTTGACAAAGATCTGTTGCAACACAGCAGTCACGTGACGTGATATGAACCTGTTGCGGTTTTTTCATACACATAGCGCCACAACCtgacaacacaacacaacattcAGAGCGGATGAATAATCAGCTCCGCAGCTGACAAGTTAATAATGACTTGCACCATAATGCGGAGCAATTAAGTAGCATCACGTGGGGACAATTTGCCGTTGCTCAGGCggtcttgtttttcttcttttcttaatATTGTTGATTGATTGCAGTCTTTAAAGTCTGGCATTCGTTTACAATATATAGAATTTCAACATCGCATCCAACCCTTAAACACGTCCCAGAAGGCACTTACATCAACTTATCAAAACATGCgtttttgtttcacaatattgAGAACATGTGGATAGATGGTATCTTTCATCTCCAAAGtccaggtcatatttcacttcaaaattaaaatctgcTAAATTGCGTTACGGGGGCCTGTTTTATTAAACAGGTGCTTTATtgtatacatgaaaaaaaaaaaataataacaataaatcaccataatttacaacaaaacacaagatccTTCATGCGAAGTAAAGCTCTTTTGCTTCCGCAGTAAAATGTGACCCAGACATATTCTTTACGGGGTTCTGCCcaattattatttcagaaattAAACTTAACGTAGCCTTGGGATCGTGTGAATGAGGACATGGCATCACTATGTAACCCTTAACACTAATATTCTATAATGACATTCAGAGAAGTTCAACAAAAGAttctattaaaacacaaatattaaaagttgTGAAAACTTGATTTGGCAACATTGCTCTTTCAGCACTCTCGAGTCTCGAATGGTATTTGAAAAGTCAAACGTTCAGCACAGTCACTCACAATACATCACAGACCTCTCCGAATGCATGAATAAGCCTGACATTGACTCCAAATTCACACTAAACAGGTGAAGTTAATACCTTTGCCACTGCTAACAACACAATATTCACTGGCTCAAAAAGCTCCCCgttttctcgctctctctccacTTCTTCATTTTCGTTGTCGTTATCAGCTCGAATATTTCAAGGCCCGAGCAGCTCTCAGAAAAGTAGCTTTGCCATCCCTATTTTTCAGTGCAGTGATGCAACTTGAAGCGCTTTAGGGAGGGGGATAAAATTAACAGCCTTGCAAGTCTGCAGCGTGGGTGAACACTGTAGGCTAGAGTAACTACCGCCTTTACAGTCACTGGGTCCAGATAGTATAATCTCCAAATTACTCATGCTATATCTGCTTTGCTGGATATGGAGTTCTGTCTGGGTAGCGTCGCATCGGTGAGCGTGTTGCTCCTTTGTCATTATCGCTCTAACCTCCCTCCACCGAAGGCTCGATGCTGTGAAACCAAGGATGAATGAGTCATGGCTCAAGTAATTCAAAGCACTGCCGAAGCGTCCATACAAGCGGCACGATGTTATGCAAAGCACGCGCTCGCGACAACCCAGAGACTAATGAATCCACATCTGGGCGCACGTTGTTGCATACTCATAGTTGTCCgaaatgtcttgttttgtagTCTAAAAAAAGTCGGCTTATGCATGGGGCTTCAAAACAAACCGCTGACCGGCTCTAGAGGGACTGGGTAAAGCGAGTGGCCTAATCTCGCTGCCGAACATACGGTGAGAGCGCTTCGCCCCTTGACCTTTTTTCACAGCTGGCAGCGTTTCAACACCGCGGACTCCGCTGAACCGGGCAGCATATGCCGCTTGGCTTAACGCTCCCCGCTGAGGTCCGTCAAGAGCTCCGCCGTCTGCATAATCCCACACTCAAAGGCACGTCAGTTGCGTTTCTCTCAAGGCCCAGCTTCTGCCGCCAATCTACGATGTGCATTAATCTACTTAATCTGTTTTAGCGAAGTTAAAAGACAGCTCGGTATAGACTCCAAGCCTATTTCCTCCTGGAAGGATTCGTGCTGAAGCTAGTCGTGCTCCTGTCTGCAGTTTTTTAGATGGTTGAGCTCTATGGTTTTGATATAACTGGATTAATCAGGGGTTGGAAAAAACATGCATCAGCCAAAAACGCACGCGGCTAATGCACGACACTCTTCTGAATTAAACATGGCCCGGAACAAACCGTTCTGCAGAGGTTGACAGgagagtaaaaaacaaaaacactattaCGCCTCTGCCTAGAACCCCTCGAGTCATTCAGAAAATTCCTTTAGCGTAACAAGACATCCGATTAATAAACGAGAGCTAAAAAATAGTGGGGAAAAGTTAAAAGCGTTCACAGCTGGAGTTGATCGGCGCCACAGATGAATGACCCAGATGCTAGAGCGAGCGCTGCTTTGCCTGCTTTCGGTTTCACTAACAAAACATCCAGCTGTTCTCCAAGACGACATTCCCGGGATTTGATAAAAGAAGCCTGCCGTATGCAACCTGGAGAGAGCAGCCTTAGCTTCTAGGTCACAGCTTGCTGAGCCACTCATTGACAATCCTGTATGCTTAATCACAAGGCTTTCTTTTCACTTCAAAGAGCCTACTTGAGTACTGTGCATCAACCACCAAAGATGGATTTGGGCTAGAATGGGCATTAACGAGAAGTTACAGTTTCACAACAACCAAATAACTTACTTTTTTGTCAGTATTATAAGTACGCATGTATGTGAGATGAGTAGCATTAGTTTGTGTTTTCGGTTTGATAAAGTGTTTTCGTATACAGATGTGACATTAACCGTTCTGCTTCCGCTCCTCAGATGGCAAGTTTCCGTCTTGTTGTTTTAAAAGGTCAAGTAAATATCAGTCAGGTGTATCATCTGCTTCTTCTAGACATAAATAGCAGTCCGGGAGATGATGGACCCGTCTCGCTGGGACTCCATGTCGTCGTCCAGGTAAGGTACACACTCGTCTTCGTGCCGGTGGATTTGGTAGCTGGGCGGCAGTCCGCTGAAACGGTCGTACCTTTCgtcctcttcttcatcctccAGGCTGTCGTTGAGAGCGTCGAACTTCCTGCGCTCGGCCTCGTTCATATCGCCGCTAAGCAGGATGTCATGGGCGGTTGGAGTGTTTCCGGTCATGCGCGGGAACTCGTTGCATTTCTCTGTCAGTGAGCCTGGGTCGCTCTCACGGTACGTATAAATCGGCCCATTGTTGTTGGCTCCCGCGCCGTTCTTACTAGCCTTCTTGCCTCCAAAAAGACGTGTTTTGTTGCCATAAGCGCCCTGCTCGCCATCGCCCGAATATCCGTGCTGATGGCGACGACTTCGCATAACTAAGACGGCGACCAACGCACTGACCAAAATGAGCGCCAAGAAGCTTCCCAGAA
>TU46510
gcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaatatctAGTGTTGACATCTTGTCATGTTGAGGGGTGAGAGAGCAAACAGTTGTCAGTGCAAAAAGTTTGTGCGCGAACGTCAATCCGTACTGTACTTTCGTAGCAGGCCGTGTGCCAGTCACTAACTAGTGTGCGTCTGGGAAGCTACATCTGCTGAACGCGCAGGATTCCCGCCTGTCTAAATCACAGACTCAAGGCAGCTGAGGTTATTCTCATGTCTACTCCGGGCTATTATACTACATCTGCTTTATATTTGGTGTTGGCCATAGCTGACCACTACGTCTGTTATTTACAGTACCGATAAATAACACTTTTCTCTCACCGGATTTCTCGatgataaatacatacatatacagtatatatatatctcacacaCAGGACACGTCACGTCAAGATACACACCATCAACACCTCACAGGATAGCACTGGTTTCCATCCATAGTATATAACAAACTGGACAAAAAGAAGAGTATAGTTTGTTCTCACAAGTTTTGACAAAGATCTGTTGCAACACAGCAGTCACGTGACGTGATATGAACCTGTTGCGGTTTTTTCATACACATAGCGCCACAACCtgacaacacaacacaacattcAGAGCGGATGAATAATCAGCTCCGCAGCTGACAAGTTAATAATGACTTGCACCATAATGCGGAGCAATTAAGTAGCATCACGTGGGGACAATTTGCCGTTGCTCAGGCggtcttgtttttcttcttttcttaatATTGTTGATTGATTGCAGTCTTTAAAGTCTGGCATTCGTTTACAATATATAGAATTTCAACATCGCATCCAACCCTTAAACACGTCCCAGAAGGCACTTACATCAACTTATCAAAACATGCgtttttgtttcacaatattgAGAACATGTGGATAGATGGTATCTTTCATCTCCAAAGtccaggtcatatttcacttcaaaattaaaatctgcTAAATTGCGTTACGGGGGCCTGTTTTATTAAACAGGTGCTTTATtgtatacatgaaaaaaaaaaaataataacaataaatcaccataatttacaacaaaacacaagatccTTCATGCGAAGTAAAGCTCTTTTGCTTCCGCAGTAAAATGTGACCCAGACATATTCTTTACGGGGTTCTGCCcaattattatttcagaaattAAACTTAACGTAGCCTTGGGATCGTGTGAATGAGGACATGGCATCACTATGTAACCCTTAACACTAATATTCTATAATGACATTCAGAGAAGTTCAACAAAAGAttctattaaaacacaaatattaaaagttgTGAAAACTTGATTTGGCAACATTGCTCTTTCAGCACTCTCGAGTCTCGAATGGTATTTGAAAAGTCAAACGTTCAGCACAGTCACTCACAATACATCACAGACCTCTCCGAATGCATGAATAAGCCTGACATTGACTCCAAATTCACACTAAACAGGTGAAGTTAATACCTTTGCCACTGCTAACAACACAATATTCACTGGCTCAAAAAGCTCCCCgttttctcgctctctctccacTTCTTCATTTTCGTTGTCGTTATCAGCTCGAATATTTCAAGGCCCGAGCAGCTCTCAGAAAAGTAGCTTTGCCATCCCTATTTTTCAGTGCAGTGATGCAACTTGAAGCGCTTTAGGGAGGGGGATAAAATTAACAGCCTTGCAAGTCTGCAGCGTGGGTGAACACTGTAGGCTAGAGTAACTACCGCCTTTACAGTCACTGGGTCCAGATAGTATAATCTCCAAATTACTCATGCTATATCTGCTTTGCTGGATATGGAGTTCTGTCTGGGTAGCGTCGCATCGGTGAGCGTGTTGCTCCTTTGTCATTATCGCTCTAACCTCCCTCCACCGAAGGCTCGATGCTGTGAAACCAAGGATGAATGAGTCATGGCTCAAGTAATTCAAAGCACTGCCGAAGCGTCCATACAAGCGGCACGATGTTATGCAAAGCACGCGCTCGCGACAACCCAGAGACTAATGAATCCACATCTGGGCGCACGTTGTTGCATACTCATAGTTGTCCgaaatgtcttgttttgtagTCTAAAAAAAGTCGGCTTATGCATGGGGCTTCAAAACAAACCGCTGACCGGCTCTAGAGGGACTGGGTAAAGCGAGTGGCCTAATCTCGCTGCCGAACATACGGTGAGAGCGCTTCGCCCCTTGACCTTTTTTCACAGCTGGCAGCGTTTCAACACCGCGGACTCCGCTGAACCGGGCAGCATATGCCGCTTGGCTTAACGCTCCCCGCTGAGGTCCGTCAAGAGCTCCGCCGTCTGCATAATCCCACACTCAAAGGCACGTCAGTTGCGTTTCTCTCAAGGCCCAGCTTCTGCCGCCAATCTACGATGTGCATTAATCTACTTAATCTGTTTTAGCGAAGTTAAAAGACAGCTCGGTATAGACTCCAAGCCTATTTCCTCCTGGAAGGATTCGTGCTGAAGCTAGTCGTGCTCCTGTCTGCAGTTTTTTAGATGGTTGAGCTCTATGGTTTTGATATAACTGGATTAATCAGGGGTTGGAAAAAACATGCATCAGCCAAAAACGCACGCGGCTAATGCACGACACTCTTCTGAATTAAACATGGCCCGGAACAAACCGTTCTGCAGAGGTTGACAGgagagtaaaaaacaaaaacactattaCGCCTCTGCCTAGAACCCCTCGAGTCATTCAGAAAATTCCTTTAGCGTAACAAGACATCCGATTAATAAACGAGAGCTAAAAAATAGTGGGGAAAAGTTAAAAGCGTTCACAGCTGGAGTTGATCGGCGCCACAGATGAATGACCCAGATGCTAGAGCGAGCGCTGCTTTGCCTGCTTTCGGTTTCACTAACAAAACATCCAGCTGTTCTCCAAGACGACATTCCCGGGATTTGATAAAAGAAGCCTGCCGTATGCAACCTGGAGAGAGCAGCCTTAGCTTCTAGGTCACAGCTTGCTGAGCCACTCATTGACAATCCTGTATGCTTAATCACAAGGCTTTCTTTTCACTTCAAAGAGCCTACTTGAGTACTGTGCATCAACCACCAAAGATGGATTTGGGCTAGAATGGGCATTAACGAGAAGTTACAGTTTCACAACAACCAAATAACTTACTTTTTTGTCAGTATTATAAGTACGCATGTATGTGAGATGAGTAGCATTAGTTTGTGTTTTCGGTTTGATAAAGTGTTTTCGTATACAGATGTGACATTAACCGTTCTGCTTCCGCTCCTCAGATGGCAAGTTTCCGTCTTGTTGTTTTAAAAGGTCAAGTAAATATCAGTCAGGTGTATCATCTGCTTCTTCTAGACATAAATAGCAGTCCGGGAGATGATGGACCCGTCTCGCTGGGACTCCATGTCGTCGTCCAGGTAAGGTACACACTCGTCTTCGTGCCGGTGGATTTGGTAGCTGGGCGGCAGTCCGCTGAAACGGTCGTACCTTTCgtcctcttcttcatcctccAGGCTGTCGTTGAGAGCGTCGAACTTCCTGCGCTCGGCCTCGTTCATATCGCCGCTAAGCAGGATGTCATGGGCGGTTGGAGTGTTTCCGGTCATGCGCGGGAACTCGTTGCATTTCTCTGTCAGTGAGCCTGGGTCGCTCTCACGGTACGTATAAATCGGCCCATTGTTGTTGGCTCCCGCGCCGTTCTTACTAGCCTTCTTGCCTCCAAAAAGACGTGTTTTGTTGCCATAAGCGCCCTGCTCGCCATCGCCCGAATATCCGTGCTGATGGCGACGACTTCGCATAACTAAGACGGCGACCAACGCACTGACCAAAATGAGCGCCAAGAAGCTTCCCAGAA

Function

symbol description
pvrl2l Predicted to be involved in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in adherens junction. Is expressed in cardiovascular system; epidermis; nervous system; and neural plate. Human ortholog(s) of this gene implicated in Alzheimer's disease and multiple sclerosis. Orthologous to human PVR (PVR cell adhesion molecule) and NECTIN2 (nectin cell adhesion molecule 2).

NR:

description
PREDICTED: nectin-2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46508 True 3932 TUCP 0.45 2 27539355 27615941
TU46510 False 3829 TUCP 0.45 2 27539355 27552593

Neighbor

gene id symbol gene type direction distance location
flot1a flot1a,LOC107665160,LOC107549850,LOC107752515,LOC107666343,LOC103027319,LOC108433738 coding downstream 123705 27409088 ~ 27415650 (-)
LOC122342367 NA coding downstream 670207 26865773 ~ 26869148 (-)
trnas-uga_106 NA coding downstream 811961 26727313 ~ 26727394 (-)
trnak-uuu_100 NA coding downstream 813458 26725825 ~ 26725897 (-)
trnak-uuu_99 NA coding downstream 815509 26723774 ~ 26723846 (-)
pdk2b pdk2b,LOC107665156,LOC107752527,LOC107549851,LOC107753849,LOC107562510,LOC107666345 coding upstream 331055 27946996 ~ 27951997 (-)
LOC122343310 LOC107752528,LOC107549854 coding upstream 350368 27966309 ~ 27969769 (-)
wipf2b wipf2b,LOC107752530,LOC107549849,LOC107562512,LOC107665117 coding upstream 353969 27969910 ~ 27977175 (-)
jupb jupb,LOC107562513,LOC107752531,LOC107549862,LOC107665165,LOC105013272,LOC108438403 coding upstream 365129 27981070 ~ 28037700 (-)
LOC122342469 si:dkeyp-113d7.1,LOC107727714,LOC107549870,LOC107563030,LOC107665141,LOC103032369 coding upstream 497561 28113502 ~ 28118332 (-)
G31484 tcf19l,LOC107753767 non-coding downstream 96669 27440666 ~ 27442686 (-)
G31481 NA non-coding downstream 101114 27429130 ~ 27438241 (-)
G31462 NA non-coding downstream 133274 27360904 ~ 27406081 (-)
G31472 LOC107752514,LOC105892077,LOC107665159 non-coding downstream 138479 27398769 ~ 27400876 (-)
G31466 NA non-coding downstream 147355 27373269 ~ 27392000 (-)
G31517 NA non-coding upstream 29085 27645026 ~ 27646425 (-)
G31692 NA non-coding upstream 204083 27820024 ~ 27820253 (-)
G31718 LOC107549838,LOC107752523,LOC107554337,LOC107754066,LOC107666346,LOC107665176 non-coding upstream 282826 27898767 ~ 27904683 (-)
G31723 NA non-coding upstream 304679 27920620 ~ 27923176 (-)
G31728 NA non-coding upstream 325738 27941679 ~ 27942804 (-)
LOC122342454 kifc1,LOC107665178,LOC107753731,LOC107666336,LOC107549825,LOC107554333 other downstream 149957 27383753 ~ 27389398 (-)
G31467 zbtb22b,LOC107752533,LOC107665126,LOC107666316,LOC107549842,LOC107554346,LOC107753716 other downstream 156528 27379059 ~ 27382827 (-)
G31463 LOC107665166,LOC107752513,LOC107549841 other downstream 171706 27366412 ~ 27367649 (-)
G31400 LOC102197881 other downstream 1214119 26324479 ~ 26325236 (-)
G31394 NA other downstream 1364106 26173699 ~ 26175249 (-)
G31508 LOC106519560,LOC107665151,LOC102211354,LOC101487824,LOC102313318,LOC102779181 other upstream 26751 27642692 ~ 27644732 (-)
eif1 eif1b,LOC107549864,LOC103043673,LOC107666344,LOC107665169 other upstream 449356 28065297 ~ 28067762 (-)
LOC122342471 si:dkeyp-113d7.10,LOC107753946,LOC107666338,LOC107563029,LOC107727707,LOC107549831 other upstream 504306 28120247 ~ 28130380 (-)
LOC122342472 znf384l,LOC107665159,LOC107752514 other upstream 565625 28181566 ~ 28187257 (-)
G31776 LOC107712874 other upstream 748084 28364025 ~ 28365196 (-)

Expression


Co-expression Network