LOC122343301


Basic Information

Item Value
gene id LOC122343301
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27611727 ~ 27615408 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU46524
ATCTCTCGAAAACGGCCGTTTCTATGCTGCGTGCTACGCAGCATTTGTCGTTGAAGACGAAACGCAGCACGTTCTTTAAATCGCTCCCTGACCGTTTCGACTTCAGGTTTggttattttcttaaaaaatcgAAATGTTTGCTTTGTGAAGGACTAAGGATCCAACATGGCTGGCATTTTTTAATCTCGCTCTTGTCTCTTTAAGCCCCAGCCGGGgactcagccaatcagagaggaGATGCTGTGAACGTCCTTGCCGACGACCTTGATGAAGAGGGGACAGGATAACTGAAAACAAGGCTTTAAGAAAGGCAGTGATGAATGGGCTTCAGCAGAGAGGAAAAGGAATAGACGAGGAGCGAGGGTAAGATTGATGGCAGCATGCTGATCAGGAAACGCACCAATCCTCCAACGGACAGCGGCTGTGCTCGGCATCCCCCATCCTCCCCTCCACGTCCCTCCATCGCACCTCCTCCCCCTCACGCTCACTACATCCATGTGGTCTTCCGGAGCAATGACACATTATTACTGGCAAGTTCAGGATCAATCAATCCGGCTATGTGTCACAAGCCACCGCAAGCGAACGTCCCATCATTATAAACCAATCAACATCTTCCCACAAATAACAAAGGCCTCTAATTACGTCCTTACAGTCTTTCACACCCCACTGGGTCCTATTGCTCCGTTTTAAAAAATCCCATCTAAAATGGTTCCATGCCAGTGATCACGGTAACGAAGAAAACTACCGCAATCAGTTTCAtcaagcagaaaaaaacacGGATGCACAAAATTGTCCCACGCCAATTGTGAATGATTGTGAATGATACTGTTGCGAGCGTCCATATCCGGTTTCGTCAggtttaatgttgttaaattatgCTTCTGTGTTTCCTACACAAGCATAGTGTAAACAGCATGAGATGTGATGTCTGAATCGACTCTTATGAACTGGAAAGATTCATGAAACAGCCTCTCATCAAGGATAAAGAACTAGTCATTTAAACTGTAATctaactgtttttaaaagcacatcATAA
>XR_006250750.1
GTAAGATTGATGGCAGCATGCTGATCAGGAAACGCACCAATCCTCCAACGGACAGCGGCTGTGCTCGGCATCCCCCATCCTCCCCTCCACGTCCCTCCATCGCACCTCCTCCCCCTCACGCTCACTACATCCATGTGGTCTTCCGGAGCAATGACACATTATTACTGGCAAGTTCAGGATCAATCAATCCGGCTATGTGTCACAAGCCACCGCAAGCGAACGTCCCATCATTATAAACCAATCAACATCTTCCCACAAATAACAAAGGCCTCTAATTACGTCCTTACAGTCTTTCACACCCCACTGGGTCCTATTGCTCCGTTTTAAAAAATCCCATCTAAAATGGTTCCATGCCAGTGATCACGGTAACGAAGAAAACTACCGCAATCAGTTTCAtcaagcagaaaaaaacacGGATGCACAAAATTGTCCCACGCCAATTGTGAATGATTGTGAATGATACTGTTGCGAGCGTCCATATCCGGTTTCGTCAggtttaatgttgttaaattatgCTTCTGTGTTTCCTACACAAGCATAGTGTAAACAGCATGAGATGTGATGTCTGAATCGACTCTTATGAACTGGAAAGATTCATGAAACAGCCTCTCATCAAGGATAAAGAACTAGTCATTTAAACTGTAATctaactgtttttaaaagcacatcATAACATCAATGTGACTTTATTGTAACATTACTTTACCAAGCAATAATGGCAAGAACGGCCCCTTATACTTAAGAGTGGTCTCATATAAGGTGTTTCTTGGAGTTTATAGTACATTAAAGAATGACCATATGAATTTTATGTATGCCAGGTGAtctgtaaatgtgaaaaaactgTTTCTATTGCAGTTTTGCGATATATTGCGTCTCTTTTAGCTTCCATCTTTTCTCAATTATATTCCCAAAGGATAATGGAAACCggataattaaacaaaaactccCATATATTGCAAAAACATGCTCATATAAGATGGATTTTCAggcaattataaaaaaatatattgcagaggtgcaatgcagtttatttgtttttgggggtttttgcatttacaggtcACCGAACGTATGCGAAGGTCACATGATCGTTCTTTAATGTGCTATAACCCCCAAGAAACACCTCAACCCTTATCTTAATTAAAAAGGGCTTTCCTTGGAAAAACCTTATTTACATGCACACATCTGTGCATCAGCCTCTCGTCAATGCTTGTGTTATACCAGCTCCGCATGTTTCAGAAGCACAGAGAAGCTTTGCTACAGATACACGTATACACCTCTTTCAATTAAACACAATGGCTAGTTCAGCGGCTGCAATGCATAGAAAACGACTATAACACCAATGGCatctgaaaaagctttttggaAATTCTGCTTTTAAGAGTGCAAGCATTTAAAGTGTCAGATGACAAAACTACGGCATGTTATTGCAACaaaaagcatgttattttatattagtgggtacactatataaatatatagtgttatagtaGGCCTTTATCCATGTTCTTTGTGCGAAAAGGCCTTAACCCATCTGTGAGTAAGCAATCTACATCAGACTCTAGCAGTCAgtaaatgttcaaaaacagcatttggtTCACAACTGACTCCCTCATTCACTGCATACATTTATTGTAGTAGATTAAtgatattcttaaaaaaaagaaatattactggTTACCGTTTAATCGTTGTAGAGTTGAACCCTGAAACCTTTGTTTTGTGCATATGCAACATGAagcaaaagcaacattttttctattatatttgtaaaatttatAGTAGTAttgtatgaaaatatattatttggatGACACAAATACACTAAAATCACTATACCGTGCCTTCGTCATAGCAGAGAGCGACGTTTCATCGCTTTAAAGGACGAAGCTATGAACTCGATGAACTGGAGTGCAGAACAGCCATCTTTTTATCGAACGATTCTGTAACTTGTCAAAAAAATCATGTCTTGCCGCATAGCGACACCCCGACACTAGTTAAAATACCGCTCACATTTTCatccaaacataaaaaaacacacacacacacatctttgcCCTCTAATGCACCTTGTGTTCTTCTTGGCCCCTGCTTCATTTATCTTCTCGCTCCCATCTTCAGCATTATGAATGAAGCTTGCAAAGGGAgggtgtgtgcatgtgcaaaGAAAAGAGTAGATAAATGCGTATGGAGTGGGGGTGGCTGGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46524 False 1036 lncRNA 0.45 3 27613262 27615408
XR_006250750.1 True 2208 lncRNA 0.39 3 27611727 27615045

Neighbor

gene id symbol gene type direction distance location
flot1a flot1a,LOC107665160,LOC107549850,LOC107752515,LOC107666343,LOC103027319,LOC108433738 coding downstream 196077 27409088 ~ 27415650 (-)
LOC122342367 NA coding downstream 742579 26865773 ~ 26869148 (-)
trnas-uga_106 NA coding downstream 884333 26727313 ~ 26727394 (-)
trnak-uuu_100 NA coding downstream 885830 26725825 ~ 26725897 (-)
trnak-uuu_99 NA coding downstream 887881 26723774 ~ 26723846 (-)
pdk2b pdk2b,LOC107665156,LOC107752527,LOC107549851,LOC107753849,LOC107562510,LOC107666345 coding upstream 331588 27946996 ~ 27951997 (-)
LOC122343310 LOC107752528,LOC107549854 coding upstream 350901 27966309 ~ 27969769 (-)
wipf2b wipf2b,LOC107752530,LOC107549849,LOC107562512,LOC107665117 coding upstream 354502 27969910 ~ 27977175 (-)
jupb jupb,LOC107562513,LOC107752531,LOC107549862,LOC107665165,LOC105013272,LOC108438403 coding upstream 365662 27981070 ~ 28037700 (-)
LOC122342469 si:dkeyp-113d7.1,LOC107727714,LOC107549870,LOC107563030,LOC107665141,LOC103032369 coding upstream 498094 28113502 ~ 28118332 (-)
G31496 NA non-coding downstream 12437 27594993 ~ 27599290 (-)
G31484 tcf19l,LOC107753767 non-coding downstream 169041 27440666 ~ 27442686 (-)
G31481 NA non-coding downstream 173486 27429130 ~ 27438241 (-)
G31462 NA non-coding downstream 205646 27360904 ~ 27406081 (-)
G31517 NA non-coding upstream 29618 27645026 ~ 27646425 (-)
G31692 NA non-coding upstream 204616 27820024 ~ 27820253 (-)
G31718 LOC107549838,LOC107752523,LOC107554337,LOC107754066,LOC107666346,LOC107665176 non-coding upstream 283359 27898767 ~ 27904683 (-)
G31723 NA non-coding upstream 305212 27920620 ~ 27923176 (-)
G31728 NA non-coding upstream 326271 27941679 ~ 27942804 (-)
LOC122342454 kifc1,LOC107665178,LOC107753731,LOC107666336,LOC107549825,LOC107554333 other downstream 222329 27383753 ~ 27389398 (-)
G31467 zbtb22b,LOC107752533,LOC107665126,LOC107666316,LOC107549842,LOC107554346,LOC107753716 other downstream 228900 27379059 ~ 27382827 (-)
G31463 LOC107665166,LOC107752513,LOC107549841 other downstream 244078 27366412 ~ 27367649 (-)
G31400 LOC102197881 other downstream 1286491 26324479 ~ 26325236 (-)
G31394 NA other downstream 1436478 26173699 ~ 26175249 (-)
G31508 LOC106519560,LOC107665151,LOC102211354,LOC101487824,LOC102313318,LOC102779181 other upstream 27284 27642692 ~ 27644732 (-)
eif1 eif1b,LOC107549864,LOC103043673,LOC107666344,LOC107665169 other upstream 449889 28065297 ~ 28067762 (-)
LOC122342471 si:dkeyp-113d7.10,LOC107753946,LOC107666338,LOC107563029,LOC107727707,LOC107549831 other upstream 504839 28120247 ~ 28130380 (-)
LOC122342472 znf384l,LOC107665159,LOC107752514 other upstream 566158 28181566 ~ 28187257 (-)
G31776 LOC107712874 other upstream 748617 28364025 ~ 28365196 (-)

Expression


Co-expression Network