G31614 (capn5a,capn5,LOC107665347,LOC107660684,LOC107600851,LOC106535735)


Basic Information

Item Value
gene id G31614
gene name capn5a,capn5,LOC107665347,LOC107660684,LOC107600851,LOC106535735
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 28206958 ~ 28216248 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU46683
ggagcTGTGTGAGGACCCACACTTGTTTGTGAACGGGATCAGCGCTCACGACCTGCACCAGGGGCAGCTGGGAAACTGCTGGTTCGTGGCGGCCTGCTCCAGTCTGGCCTCCAGAGAAGCTCTGTGGCAGAAGGTTATCCCTGATTGGAAGGACCAGGAATGGGACAAGCAGAAGCCGGAGGGTTACGCTGGGATTTTTCACTTTCGGTTCTGGCGTTTCGGAGACTGGCTGGATGTAGTTATTGATGACCGACTGCCGACCGCGAACGACAAGCTCATCTACTGCCACTCTAACGACAGTAATGAGTTCTGGAGTGCTCTGGTGGAGAAAGCCTATGCCAAGTTATGTGGATGTTACGAGGCTCTGGACGGCGGGGAACACGGCCGACGCCTGGTGGACTTCACCGAGGAGTCTCTGAGCCCATGGATCTGCTCGAGGGGAAGCTGACGCAGGACGAGGAGGCCAGGAATCAGCTGTTCGATCGAGTGCTGAAGGTCCACAACAGAGGAGGCCTGATCAGCTGCTCCATCAGAGCCACGAGTCAGGCAGACATGGAAGCCCGGTTAGACTGTGGCCTGGTCAAAGGTCACGCGTGTGCGGTGACTGATGTGCGTAAAGTGCGTCTGGGCACGGGTCTGCTGGCCTTCTTCAAATCAGAGAAGCTGTCCATGATCCGCATGAGGAACCCGTGGGGTCAGAGAGAGTGGAACGGAGCCTGGAGCGACAGGTTGGTGAACATCTGGAAGCAGTcagaagcagcacagctgtattTAAAGTAGTTAATCGCGTCCACAATAAGTCTTtgtttgtgtactgtttatgtttattaaagatacacacacagtatatatttagaaaatatttacat

Function

symbol description
capn5a Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in cytoplasm. Is expressed in hatching gland; nervous system; and optic vesicle. Human ortholog(s) of this gene implicated in neovascular inflammatory vitreoretinopathy. Orthologous to human CAPN5 (calpain 5).
capn5 Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Located in cell surface. Implicated in neovascular inflammatory vitreoretinopathy.

NR:

description
PREDICTED: calpain-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46683 True 869 TUCP 0.54 4 28206958 28216248

Neighbor

gene id symbol gene type direction distance location
LOC122342376 LOC107694127,LOC107717944,LOC107590657,LOC107752637,LOC107552269 coding upstream 5947 28197236 ~ 28201011 (+)
LOC122342444 krt1-19d,LOC107665143,LOC107666326,LOC107753925,LOC107563035 coding upstream 96911 28106617 ~ 28110047 (+)
krt91 krt91,cki,LOC107727715,LOC107563033,LOC107753907,LOC107666324,LOC107549866,LOC107753917 coding upstream 123988 28080859 ~ 28082970 (+)
si:ch211-264f5.2 NA coding upstream 242728 27952149 ~ 27964230 (+)
zgc:174904 LOC107752529,LOC107665157,LOC107549855 coding upstream 261666 27941676 ~ 27945292 (+)
dhdh.1 LOC107665437,LOC107668471,LOC107709394,LOC107553352 coding downstream 138182 28354430 ~ 28360242 (+)
dhdh.2 zgc:101723,LOC107665090,LOC107712874 coding downstream 144698 28360946 ~ 28367478 (+)
LOC122343436 parp6,LOC107668484,LOC107665100,LOC106587213 coding downstream 171259 28387507 ~ 28410310 (+)
celf6 celf6,LOC106535005 coding downstream 205001 28421249 ~ 28537332 (+)
LOC122342381 LOC107665446,LOC107595396,LOC107713214,LOC107553351,LOC107753194,LOC107676404 coding downstream 377629 28593877 ~ 28594995 (+)
G31603 NA non-coding upstream 44693 28144440 ~ 28162265 (+)
G31596 NA non-coding upstream 85799 28120252 ~ 28121159 (+)
G31548 NA non-coding upstream 139168 27960947 ~ 28067790 (+)
G31557 NA non-coding upstream 227825 27925447 ~ 27979133 (+)
G31549 NA non-coding upstream 254960 27912317 ~ 27951998 (+)
G31621 NA non-coding downstream 10152 28226400 ~ 28228301 (+)
G31631 myo7aa,LOC107660700,LOC106612882,LOC106581013 non-coding downstream 53854 28270102 ~ 28270584 (+)
G31551 LOC107709388,LOC107595343,LOC107712845,LOC107668482,LOC107553360 non-coding downstream 156137 28372385 ~ 28375787 (+)
LOC122342705 NA non-coding downstream 164364 28380612 ~ 28385954 (+)
G31653 NA non-coding downstream 304736 28520984 ~ 28541933 (+)
LOC122342806 znf384l,LOC107665159,LOC107549826,LOC108433737,LOC107554334,LOC106569967,LOC107754029,LOC107752514,LOC105892077 other upstream 800870 27360843 ~ 27406088 (+)
LOC122342372 LOC107752513,LOC107665166,LOC107549841,LOC107753705,LOC107575738 other upstream 835762 27297536 ~ 27371196 (+)
LOC122342494 znf384,LOC107671195,LOC107582054 other upstream 848795 27356812 ~ 27358163 (+)
G31384 NA other upstream 2393333 25812631 ~ 25813625 (+)
G31298 LOC107569336,LOC107690089,LOC107706811,LOC107090263,LOC107391191,LOC105928559,LOC103357353 other upstream 2511577 25693802 ~ 25695381 (+)
G31619 capn5,capn5a,LOC107713096,LOC107600851,LOC107660684 other downstream 2485 28218733 ~ 28221417 (+)
G31636 NA other downstream 68779 28285027 ~ 28320694 (+)
LOC122342379 myo7aa,myo7a,LOC107660700,LOC107735900,LOC107600840 other downstream 81054 28297302 ~ 28317582 (+)
G31649 NA other downstream 134105 28350353 ~ 28353226 (+)
LOC122343276 LOC107561645,LOC107679413,LOC107569100,LOC107747810,LOC107734660,LOC107655025 other downstream 614387 28830635 ~ 28893627 (+)

Expression


Co-expression Network