eif1 (eif1b,LOC107549864,LOC103043673,LOC107666344,LOC107665169)


Basic Information

Item Value
gene id eif1
gene name eif1b,LOC107549864,LOC103043673,LOC107666344,LOC107665169
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 28065297 ~ 28067762 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU46793
CGCTCCAGAGCCAGGGTCGCCATTTTGTAAGCTCGGCAAACGCTATCGAAGCACCGAGTGAGAAGAAATCCCCTCAATAATCAGGCCAGATTACCAAGAAACCAAAACCGCGAGACCACCCGTTGTCGTCCGAAAGGAAAGGGAATCTTATCGTATGTCCGCTATCCAGAACCTCCAAACTTTTGACCCCTTTGCTGATGCAACTAAGGGTGATGATCGGCTCCCAGCTGGGACTGAGGACTACATCCACATAAGAATTCAACAGCGGAACGGGCGGAAGACTCTGACCACGGTTCAGGGCATAGCCGATGACTATGATAAAAAGAAGCTAGTCAAGGCCTTCAAGAAGAAATTCGCCTGCAATGGGACTGTGATCGAGCACCCTGAGTATGGTGAAGTAATTCAGCTGCAAGGTGATCAGCGCAAGAACATTTGCCAGTTTCTCACTGATATTGAACTGGCCAAAGAGGAGCAGCTCAAAGTCCACGGGTTCTAGAAGCTGATGTGAACTGACCCCTTCCCTCCCCCCGACTCTTAACCCGACTTACCCTGTTGTTGTGCTGCTGTTCCCCCCCAGCAGCCCCCCCTCCCTCAaggaaaaaagctgaaaatgattACCTCTGATTTGAGACTTTTTAGTATGGCACCCTTATCAAAACGACCAGTCCTGTTCAAGCATGGACAGACGGCAAGGCAAATTATGCGggataaatgattttttttgttccttgtCCCCTCCTTtagtccttttttatttttttagttcatcTTGTGCTGCTCTCGAGCACAAATTCCATGtaactttttctctttgttttgtaCAAGGTGTTTCAATAAAACCTTCAGATGCCACGTTTTGCACAATCCTTAAGTTGATGGGCGGGCTGTGGATGGGGCAGTTTGTGTATTGATTTCTTggttcatatttaaatatcaccATAAAGattctgcattttaatttctgatGAGGGCCGGCCTGCTTCAGGGTTACATTGGTGTGCCGTTTGTGCACAAAGCACGGCAGCCCCATCTTGTCTCATTATGCATCTCTAACTGCCTTTTTTACCCTTGTTTTTCACAATATGCATAATTTCAATTTTCTAAACTTGTAAtaccatattttgttttttggtctGGAATAAACAATATCCCATACGTTTgatgttttaatttcttaaatggGAAATATTTTCAACGCAGTGCTTGCTTTGGTTGTAATATCAAGTTAATAACATGAAGCAGTTGGTGTGGTTGTGCGTGAAAACGTTCTGATCTTGCCTGTGGATGGTCGTTTTATCAATGCTTTAGACTGACTTGAGTCTagtataattttagtttaaatccGATGAGTGCGTATTGCAAAGAAAACCTTGAAGAACAGAGTCAGATTTGCAAAAGTCATAACATGAAGAACAAGTGAGACGT
>XM_043237797.1
CAGGGTCGCCATTTTGTAAGCTCGGCAAACGCTATCGAAGCACCGAGTGAGAAGAAATCCCCTCAATAATCAGGCCAGATTACCAAGAAACCAAAACCGCGAGACCACCCGTTGTCGTCCGAAAGGAAAGGGAATCTTATCGTATGTCCGCTATCCAGAACCTCCAAACTTTTGACCCCTTTGCTGATGCAACTAAGGGTGATGATCGGCTCCCAGCTGGGACTGAGGACTACATCCACATAAGAATTCAACAGCGGAACGGGCGGAAGACTCTGACCACGGTTCAGGGCATAGCCGATGACTATGATAAAAAGAAGCTAGTCAAGGCCTTCAAGAAGAAATTCGCCTGCAATGGGACTGTGATCGAGCACCCTGAGTATGGTGAAGTAATTCAGCTGCAAGGTGATCAGCGCAAGAACATTTGCCAGTTTCTCACTGATATTGAACTGGCCAAAGAGGAGCAGCTCAAAGTCCACGGGTTCTAGAAGCTGATGTGAACTGACCCCTTCCCTCCCCCCGACTCTTAACCCGACTTACCCTGTTGTTGTGCTGCTGTTCCCCCCCAGCAGCCCCCCCTCCCTCAaggaaaaaagctgaaaatgattACCTCTGATTTGAGACTTTTTAGTATGGCACCCTTATCAAAACGACCAGTCCTGTTCAAGCATGGACAGACGGCAAGGCAAATTATGCGggataaatgattttttttgttccttgtCCCCTCCTTtagtccttttttatttttttagttcatcTTGTGCTGCTCTCGAGCACAAATTCCATGtaactttttctctttgttttgtaCAAGGTGTTTCAATAAAACCTTCAGATGCCACGTTTTGCACAATCCTTAAGTTGATGGGCGGGCTGTGGATGGGGCAGTTTGTGTATTGATTTCTTggttcatatttaaatatcaccATAAAGattctgcattttaatttctgatGAGGGCCGGCCTGCTTCAGGGTTACATTGGTGTGCCGTTTGTGCACAAAGCACGGCAGCCCCATCTTGTCTCATTATGCATCTCTAACTGCCTTTTTTACCCTTGTTTTTCACAATATGCATAATTTCAATTTTCTAAACTTGTAAtaccatattttgttttttggtctGGAATAAACAATATCCCATA

Function

symbol description
eif1b Predicted to enable ribosomal small subunit binding activity and translation initiation factor activity. Predicted to act upstream of or within translational initiation. Predicted to be part of eukaryotic 43S preinitiation complex. Orthologous to several human genes including EIF1B (eukaryotic translation initiation factor 1B).

NR:

description
eukaryotic translation initiation factor 1B

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46793 True 1425 TUCP 0.43 4 28065297 28067762
XM_043237797.1 False 1144 mRNA 0.45 4 28065567 28067751

Neighbor

gene id symbol gene type direction distance location
jupb jupb,LOC107562513,LOC107752531,LOC107549862,LOC107665165,LOC105013272,LOC108438403 coding downstream 27597 27981070 ~ 28037700 (-)
wipf2b wipf2b,LOC107752530,LOC107549849,LOC107562512,LOC107665117 coding downstream 88122 27969910 ~ 27977175 (-)
LOC122343310 LOC107752528,LOC107549854 coding downstream 95528 27966309 ~ 27969769 (-)
pdk2b pdk2b,LOC107665156,LOC107752527,LOC107549851,LOC107753849,LOC107562510,LOC107666345 coding downstream 113300 27946996 ~ 27951997 (-)
flot1a flot1a,LOC107665160,LOC107549850,LOC107752515,LOC107666343,LOC103027319,LOC108433738 coding downstream 649647 27409088 ~ 27415650 (-)
LOC122342469 si:dkeyp-113d7.1,LOC107727714,LOC107549870,LOC107563030,LOC107665141,LOC103032369 coding upstream 45740 28113502 ~ 28118332 (-)
LOC122342473 znf362b,LOC107593390,LOC107737708,LOC107565834,LOC107699608,LOC107712695,LOC107671956,LOC108434701 coding upstream 103489 28171251 ~ 28177586 (-)
LOC122343218 omp,ompa,LOC107735103 coding upstream 144484 28212246 ~ 28213047 (-)
pkma pkma,LOC107712845,LOC107665073,LOC107595343,LOC107668482 coding upstream 300693 28368455 ~ 28382557 (-)
LOC122342383 NA coding upstream 886586 28954348 ~ 28956291 (-)
G31728 NA non-coding downstream 122493 27941679 ~ 27942804 (-)
G31723 NA non-coding downstream 142121 27920620 ~ 27923176 (-)
G31718 LOC107549838,LOC107752523,LOC107554337,LOC107754066,LOC107666346,LOC107665176 non-coding downstream 160614 27898767 ~ 27904683 (-)
G31692 NA non-coding downstream 245044 27820024 ~ 27820253 (-)
G31507 NA non-coding downstream 415752 27557605 ~ 27649545 (-)
G31736 NA non-coding upstream 12413 28080175 ~ 28080381 (-)
G31737 NA non-coding upstream 28132 28095894 ~ 28096491 (-)
LOC122342474 NA non-coding upstream 59452 28127214 ~ 28129808 (-)
G31759 NA non-coding upstream 158652 28226414 ~ 28228301 (-)
G31765 NA non-coding upstream 177228 28244990 ~ 28250107 (-)
G31508 LOC106519560,LOC107665151,LOC102211354,LOC101487824,LOC102313318,LOC102779181 other downstream 420565 27642692 ~ 27644732 (-)
G31503 pvrl2l,LOC107549846,LOC107665153,LOC107554349,LOC107752518,LOC107753776,LOC107666334 other downstream 449356 27539355 ~ 27615941 (-)
LOC122342454 kifc1,LOC107665178,LOC107753731,LOC107666336,LOC107549825,LOC107554333 other downstream 675899 27383753 ~ 27389398 (-)
G31467 zbtb22b,LOC107752533,LOC107665126,LOC107666316,LOC107549842,LOC107554346,LOC107753716 other downstream 682470 27379059 ~ 27382827 (-)
G31463 LOC107665166,LOC107752513,LOC107549841 other downstream 697648 27366412 ~ 27367649 (-)
LOC122342471 si:dkeyp-113d7.10,LOC107753946,LOC107666338,LOC107563029,LOC107727707,LOC107549831 other upstream 52485 28120247 ~ 28130380 (-)
LOC122342472 znf384l,LOC107665159,LOC107752514 other upstream 113804 28181566 ~ 28187257 (-)
G31776 LOC107712874 other upstream 296263 28364025 ~ 28365196 (-)
G31868 NA other upstream 776431 28844193 ~ 28846421 (-)
G31890 NA other upstream 905591 28973353 ~ 29012765 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 misc CI01000319 null 4787040 ~ 4790529 (+)