LOC122343276 (LOC107561645,LOC107679413,LOC107569100,LOC107747810,LOC107734660,LOC107655025)


Basic Information

Item Value
gene id LOC122343276
gene name LOC107561645,LOC107679413,LOC107569100,LOC107747810,LOC107734660,LOC107655025
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 28830635 ~ 28893627 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU46989
AGCAGATTATGTTTTACATGCGACGTTTACACTTGATCGTAAgaacttttcttcattttcaaaaactgatcattcatctttttatttgttcttgtgGGAAGATACATAAACTTCATGAGAAagcaaagacattttgagaagttgtctagaaactgaacgttttgatcaaagcaagtcttcagctgtggagcagaaagacacttccttattcatTCGTGAGTTGGTGAAGGACGATGGCGTCTGTTGAAAAGCTGCTCGTGGACTCACTGAAGGATCTGGTAGAAGCTGAACTGAAGGAGTTTCAGTGGAACTTAGTGAATTTACGTCTTGAGCATCTTTCAAGGTCTGAATTGGAAAAGGCAGATAGATTCGACACAGTGGACAAAATGGTCAAATGTTTTGGACCAGACGAAGCTGTGAAGGTCATGATAGACATCCTAAGAAAGATGAGCCAGAATAATCTGGCTGAATGGTTGGAGAATGAACACAAGCGAgCTCAGACTGAGGGCGATATGAAGACATCTGTAGagctgaaaaactttttaaaagtcacAAAGCAAACATGAAGAAGAACGTAGAATATATCATTGAGGGCAACATagaaaatgaagcaaaacttaaggctgtttacacagatctgttcatcacagaggAGATATGAAAGATGTCAATCACGAACATGAGATTCTGAAGATTGATGatgctttcaaaaacaaaaaaacacagggcaaaccaatcaaatgcaatgatatatttacCGAAGTGAGgaaaaacagtgagaaaaaaTTGTTCTCACTAAGGGCatcgctggcattggaaaaactgtctctgtgcacaagttcatcctggactgggcagaaggaaaagccaatcaagatatacactgtgtgttcctgcttccattcagagagatTAACTTAATGACAAATGAAGATTTCAGTCTCCATGAGCTTCTGCTGGAATTTTATCCTGAACTGAAGGACCTGGAGAAATCAAAGCTATATAAGGGATGTAAgatagcatttatatttgatggacttgatgagAGTCGCCTGTCtctaaattttaaaagtagatcACTGAACACTGTTGAGAAAAAAGCATCTGTGGATGTGCTCTTTACAAGTCTGGTCAAAGGGACTCTGCTTCCATCAGCTATTGTCTGGGTGACATCACGACccgcagcagccaatcagatccctccTCAGTATGTAGGATTGTTCACAGAGGTGCGAGGATTCACTGACCAACAGAAGGAGGAGTACTTCAGAAAGAGATTCACAGATGAGAGTCTGTcctccag
>TU46990
CTGTGAAGGTCATGATAGACATCCTAAGAAAGATGAGCCAGAATAATCTGGCTGAATGGTTGGAGAATGAACACAAGCGAgCTCAGACTGAGGGCGATATAAAGACATCTGGAGagctgaaaaactttttaaaagtcacAAAGCAAACATGAAGAAGAACGTAGAATATATCATTGAGGGCAACATagaaaatgaagcaaaacttaaggctgtttacacagatctgttcatcacagaggAGATATGAAAGATGTCAATCACGAACATGAGATTCTGAAGATTGATGatgctttcaaaaacaaaaaaacacagggcaaaccaatcaaatgcaatgatatatttacCGAAGTGAGgaaaaacagtgagaaaaaaTTGTTCTCACTAAGGGCatcgctggcattggaaaaactgtctctgtgcacaagttcatcctggactgggcagaaggaaaagccaatcaagatatacactgtgtgttcctgcttccattcagagagatTAACTTAATGACAAATGAAGATTTCAGTCTCCATGAGCTTCTGCTGGAATTTTATCCTGAACTGAAGGACCTGGAGAAATCAAAGCTATATAAGGGATGTAAgatagcatttatatttgatggacttgatgagAGTCGCCTGTCtctaaattttaaaagtagatcACTGAACACTGTTGAGAAAAAAGCATCTGTGGATGTGCTCTTTACAAGTCTGGTCAAAGGGACTCTGCTTCCATCAGCTATTGTCTGGGTGACATCACGACccgcagcagccaatcagatccctccTCAGTATGTAGGATTGTTCACAGAGGTGCGAGGATTCACTGACCAACAGAAGGAGGAGTACTTCAGAAAGAGATTCACAGATGAGAGTCTGTcctccag
>TU46991
AGCAGATTATGTTTTACATGCGACGTTTACACTTGATCGTAAgaacttttcttcattttcaaaaactgatcattcatctttttatttgttcttgtgGGAAGATACATAAACTTCATGAGAAagcaaagacattttgagaagttgtctagaaactgaacgttttgatcaaagcaagtcttcagctgtggagcagaaagacacttccttattcatTCGTGAGTTGGTGAAGGACGATGGCGTCTGTTGAAAAGCTGCTCGTGGACTCACTGAAGGATCTGGTAGAAGCTGAACTGAAGGAGTTTCAGTGGAACTTAGTGAATTTACGTCTTGAGCATCTTTCAAGGTCTGAATTGGAAAAGGCAGATAGATTCGACACAGTGGACAAAATGGTCAAATGTTTTGGACCAGACGAAGCTGTGAAGGTCATGATAGACATCCTAAGAAAGATGAGCCAGAATAATCTGGCTGAATGGTTGGAGAATGAACACAAGCGAgCTCAGACTGAGGGCGATATGAAGACATCTGTAGGTAATTCACAACATATCTCAAagctgaaaaactttttaaaagtcacAAAGCAAACATGAAGAAGAACGTAGAATATATCATTGAGGGCAACATagaaaatgaagcaaaacttaaggctgtttacacagatctgttcatcacagaggAGATATGAAAGATGTCAATCACGAACATGAGATTCTGAAGATTGATGatgctttcaaaaacaaaaaaacacagggcaaaccaatcaaatgcaatgatatatttacCGAAGTGAGgaaaaacagtgagaaaaaaTTGTTCTCACTAAGGGCatcgctggcattggaaaaactgtctctgtgcacaagttcatcctggactgggcagaaggaaaagccaatcaagatatacactgtgtgttcctgcttccattcagagagatTAACTTAATGACAAATGAAGATTTCAGTCTCCATGAGCTTCTGCTGGAATTTTATCCTGAACTGAAGGACCTGGAGAAATCAAAGCTATATAAGGGATGTAAgatagcatttatatttgatggacttgatgagAGTCGCCTGTCtctaaattttaaaagtagatcACTGAACACTGTTGAGAAAAAAGCATCTGTGGATGTGCTCTTTACAAGTCTGGTCAAAGGGACTCTGCTTCCATCAGCTATTGTCTGGGTGACATCACGACccgcagcagccaatcagatccctccTCAGTATGTAGGATTGTTCACAGAGGTGCGAGGATTCACTGACCAACAGAAGGAGGAGTACTTCAGAAAGAGATTCACAGATGAGAGTCTGTcctccag
>XR_006250740.1
CGAAGCTGTGAAGGTCATGATAGACATCCTAAGAAAGATGAGCCAGAATAATCTGGCTGAATGGTTGGAGAATGAACACAAGCGAgCTCAGACTGAGGGCGATATAAAGACATCTGGAGagctgaaaaactttttaaaagtcacAAAGCAAACATGAAGAAGAGCGTAGAATATATCATTGAGGGCAACAtagaa

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46989 False 1303 TUCP 0.40 4 28887153 28893627
TU46990 False 889 TUCP 0.41 3 28830640 28893627
TU46991 True 1324 TUCP 0.40 4 28887153 28893627
XR_006250740.1 False 195 lncRNA 0.41 3 28830635 28831298

Neighbor

gene id symbol gene type direction distance location
LOC122342381 LOC107665446,LOC107595396,LOC107713214,LOC107553351,LOC107753194,LOC107676404 coding upstream 235640 28593877 ~ 28594995 (+)
celf6 celf6,LOC106535005 coding upstream 293303 28421249 ~ 28537332 (+)
LOC122343436 parp6,LOC107668484,LOC107665100,LOC106587213 coding upstream 420325 28387507 ~ 28410310 (+)
dhdh.2 zgc:101723,LOC107665090,LOC107712874 coding upstream 463157 28360946 ~ 28367478 (+)
dhdh.1 LOC107665437,LOC107668471,LOC107709394,LOC107553352 coding upstream 470393 28354430 ~ 28360242 (+)
LOC122342385 LOC107749047,LOC107728228,LOC107574018,LOC107722090,LOC107685875,LOC107553362,LOC107569032,LOC107669894 coding downstream 76624 28970251 ~ 28993117 (+)
G31665 NA non-coding upstream 177802 28646977 ~ 28652833 (+)
LOC122342517 NA non-coding upstream 236768 28568285 ~ 28593867 (+)
G31653 NA non-coding upstream 288702 28520984 ~ 28541933 (+)
LOC122342705 NA non-coding upstream 444681 28380612 ~ 28385954 (+)
G31551 LOC107709388,LOC107595343,LOC107712845,LOC107668482,LOC107553360 non-coding upstream 454848 28372385 ~ 28375787 (+)
G31845 NA non-coding downstream 104101 28997728 ~ 29002977 (+)
G31846 NA non-coding downstream 110169 29003796 ~ 29023855 (+)
G31847 NA non-coding downstream 111655 29005282 ~ 29024602 (+)
G31848 NA non-coding downstream 113010 29006637 ~ 29025893 (+)
LOC122343231 LOC107747643,LOC107741456,LOC107747810,LOC107734660 non-coding downstream 261806 29155433 ~ 29165907 (+)
G31649 NA other upstream 477409 28350353 ~ 28353226 (+)
G31636 NA other upstream 509941 28285027 ~ 28320694 (+)
LOC122342379 myo7aa,myo7a,LOC107660700,LOC107735900,LOC107600840 other upstream 513053 28297302 ~ 28317582 (+)
G31619 capn5,capn5a,LOC107713096,LOC107600851,LOC107660684 other upstream 609218 28218733 ~ 28221417 (+)
G31614 capn5a,capn5,LOC107665347,LOC107660684,LOC107600851,LOC106535735 other upstream 614387 28206958 ~ 28216248 (+)
LOC122342386 LOC107670352,LOC107565530,LOC107659779,LOC107747635,LOC107566978,LOC107561645,LOC107665206,LOC108183462,LOC107749046,LOC107574515,LOC107671223,LOC107663329,LOC107575399,LOC107576964,LOC107571858,LOC107575109,LOC107698614 other downstream 112138 29005765 ~ 29185529 (+)

Expression


Co-expression Network