LOC122343231 (LOC107747643,LOC107741456,LOC107747810,LOC107734660)


Basic Information

Item Value
gene id LOC122343231
gene name LOC107747643,LOC107741456,LOC107747810,LOC107734660
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 29155433 ~ 29165907 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU47003
ATTAACCTaatcatcattttaatgtttatacgGGGACATACATGAacataaagagaaaacaaagacattttgagaagaTGTCTAGAAACTGAACGTTTTGATCAAAGCAAGTCTTCagctgtggagcagaaagacacttccttattcatAAGTCAATGACAGAAGATGACGTCGGAGCAGAATCTGGATACAATGGAAGGTGAACATAAATGCTTAGAGGCAAGAGAAAAACAAGATCCAGTCCAGATGAGAAATGCCCGACTACAGTCAGTGTTGATATAAATTCTGAAACAGGTGCGAGTGTAAATGCTCCTCTATTGACTGCGAACACCTTCACAGGACCAGTAACCATTTATGGCTCAAATGCTGAAGGAAACGATAAACAGAAATCCTCAGAGATGGCAGAggaacacagagaaaaacaagagctgcaaaactttttggaaactcacaaaacaaacatgaaggagaaaaacagaatatatttttgaggGCAACAAAGACAAGGAAGCACAACTCAAGGCTGTTTACACAGatctgttcatcacagaggGAGATATGAAAGATGTCAATCACGAACATGAGATTCTGAAGATTGATGATGCTTTCAAGAGCAATAAAACACAGGACAAGCCAATCAAatgcaatgatatatttactggactgaggaaaaacagtgagaaaaaaattgttctcaCTAAGGGCatcgctggcattggaaaaactgtctctgtgcacaagttcatcctggactgggcagaaggaaaagccaatcaagatatacactgtgtgttcctgcttccattcagagagatTAAC
>XR_006250731.1
CTaatcatcattttaatgtttatacgGGGACATACATGAacataaagagaaaacaaagacattttgagaagaTGTCTAGAAACTGAACGTTTTGATCAAAGCAAGTCTTCagctgtggagcagaaagacacttccttattcatAAGTCAATGACAGAAGATGACGTCGGAGCAGAATCTGGATACAATGGAAGGTGAACATAAATGCTTAGAGGCAAGAGAAAAACAAGTCCAGATGAGAAATGCCCGACTACAGTCAGTGTTGATATAAATTCTGAAACAGGTGCGAGTGTAAATGCTCCTCTATTGACTGCGAACACCTTCACAGGACCAGTAACCATTTATGGCTCAAATGCTGAAGGAAACGATAAACAGAAATCCTCAGAGATGGCAGAggaacacagagaaaaacaagagctgcaaaactttttggaaactcacaaaacaaacatgaaggagaaaaacagaatatatttttgaggGCAACAAAGACAAGGAAGCACAACTCAAGGCTGTTTACACAGatctgttcatcacagaggGAGATATGAAAGATGTCAATCACGAACATGAGATTCTGAAGATTGATGATGCTTTCAA
>XR_006250732.1
CTaatcatcattttaatgtttatacgGGGACATACATGAacataaagagaaaacaaagacattttgagaagaTGTCTAGAAACTGAACGTTTTGATCAAAGCAAGTCTTCagctgtggagcagaaagacacttccttattcatAAGTCAATGACAGAAGATGACGTCGGAGCAGAATCTGGATACAATGGAAGGTGAACATAAATGCTTAGAGGCAAGAGAAAAACAAGATCCAGTCCAGATGAGAAATGCCCGACTACAGTCAGTGTTGATATAAATTCTGAAACAGGTGCGAGTGTAAATGCTCCTCTATTGACTGCGAACACCTTCACAGGACCAGTAACCATTTATGGCTCAAATGCTGAAGGAAACGATAAACAGAAATCCTCAGAGATGGCAGAggaacacagagaaaaacaagagctgcaaaactttttggaaactcacaaaacaaacatgaaggagaaaaacagaatatatttttgaggGCAACAAAGACAAGGAAGCACAACTCAAGGCTGTTTACACAGatctgttcatcacagaggGAGATATGAAAGATGTCAATCACGAACATGAGATTCTGAAGATTGATGATGCTTTCAA

Function

NR:

description
PREDICTED: protein NLRC3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU47003 True 819 lncRNA 0.39 6 29155433 29165907
XR_006250731.1 False 599 lncRNA 0.39 6 29155439 29165699
XR_006250732.1 False 605 lncRNA 0.39 6 29155439 29165699

Neighbor

gene id symbol gene type direction distance location
LOC122342385 LOC107749047,LOC107728228,LOC107574018,LOC107722090,LOC107685875,LOC107553362,LOC107569032,LOC107669894 coding upstream 162316 28970251 ~ 28993117 (+)
LOC122342381 LOC107665446,LOC107595396,LOC107713214,LOC107553351,LOC107753194,LOC107676404 coding upstream 560438 28593877 ~ 28594995 (+)
celf6 celf6,LOC106535005 coding upstream 618101 28421249 ~ 28537332 (+)
LOC122343436 parp6,LOC107668484,LOC107665100,LOC106587213 coding upstream 745123 28387507 ~ 28410310 (+)
dhdh.2 zgc:101723,LOC107665090,LOC107712874 coding upstream 787955 28360946 ~ 28367478 (+)
G31848 NA non-coding upstream 129540 29006637 ~ 29025893 (+)
G31847 NA non-coding upstream 130831 29005282 ~ 29024602 (+)
G31846 NA non-coding upstream 131578 29003796 ~ 29023855 (+)
G31845 NA non-coding upstream 152456 28997728 ~ 29002977 (+)
LOC122343449 NA non-coding upstream 296918 28856131 ~ 28858515 (+)
LOC122343276 LOC107561645,LOC107679413,LOC107569100,LOC107747810,LOC107734660,LOC107655025 other upstream 261806 28830635 ~ 28893627 (+)
G31649 NA other upstream 802207 28350353 ~ 28353226 (+)
G31636 NA other upstream 834739 28285027 ~ 28320694 (+)
LOC122342379 myo7aa,myo7a,LOC107660700,LOC107735900,LOC107600840 other upstream 837851 28297302 ~ 28317582 (+)
G31619 capn5,capn5a,LOC107713096,LOC107600851,LOC107660684 other upstream 934016 28218733 ~ 28221417 (+)

Expression


Co-expression Network