LOC122342219 (LOC107554691,LOC107656224)


Basic Information

Item Value
gene id LOC122342219
gene name LOC107554691,LOC107656224
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 15638512 ~ 15644874 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236025.1
TTCTGCTGCTCTCTGCTGGACGGTCTGTGGTCCAGATTGACTCGATTCAAATTtggttttaaatcaaaatgtggATTGGtttaatactaatactactaacactaatatgaaaaaataatatttgctgCAATACTATCTAAATGTCAGCCTGTGCAACATAATTGCACATTGCTGCggttgtattaaataaataagtgcgtGTGTGGATTTGACAACGCATAGCCTACTTCTGAGAAAAGTTTACAGATTATCAGCAAGACCaagcaaacaaaccaaaacagacaGTGCTCAGAATAATGGATTGTGGAaaattatagaatatataaCGCATTGATAAAATACTTAAGAAATGTAAATCTGATTTAGAAGCCAATTtataattcttatttattttattttaaaatataaaaagcgaGAAGGAGACGATGGTCATGTGACTGGTATGCGGACCAGAACAAAGATGGATGCGGAGAAGATCGACACCGAACTGGTAGCCAAAAAGCACTCTACCTCTGTCGTTTGGCGATATTTTGGCTTTAAGGTTACCGACACAGAGCAGAGAGAGGTACTGTGCAACATCTGCAAAATTAAAGTTGCTACTTCACGTGGCAACACGACAAATTTATATCAGCATCTGAAGCAGCACAGAGAAAAATACGATGAATGCATGACGGAGAAAACCCAGATTAGCAAAGAGGCGGTTACCCGAACAAATCAGAAAGTATTCACGGATATGTTTGCGAGTCTTAAGCCATATGATAGGTCTTCGCCTAGATATAAAGAAATCACAGACTCCATAACGCATTTCTTGGCGAAGGACATGATGCCTATACACAGTGTTAGTAAAGTGGGGTTTCAGAACATGATCCGAACACTAGACAAGAGGTACCAGCTGCCCTCGCGACACTATTTCTCTCACGTAGCAATCCCTACCCTTTATAACTCGCGCCGTGGTGAAGTTCAAAAGGAAATGGCTAAGGCGACGTTCTTTTCAACCACTACGGAGCTGTGGTCAAGCAGGACGAGTGAACCGTACGTTAACGTGACTGTACACTTTGTCGACGAGGAGTTTGAACTGAAAAGCCGCTGCCTGCAAACATCGTATTTTCCCGACGACCGCACCGGAGAGAACATAGCTTTGGGTTTAAGAGAGGTGCTGGCTGCATGGGACCTCTGCGAAGCTCGTCAGGTAGCCATCACAACAGGCAACGACACCAACCTCGTCAAAGCGGTTGAGCTTAATCAGTGGACTAGAATCCAGTGTTTTGGGCATAGACTTCATTTGGCCATTGAAAATACTCTGAAAGATCACGCCCAGTGCATTAACAGGGCTACTGGGATGTGCAGGAAGATTGTGGGCCACTTCTCCCATAGTTGGAAGAAAAGAGTGGCCTTGAGGGAAGCACAAAGAGAGCTTAATCTCCCAGAGCATGCCATGGTGACAGACTGCTCAACACGATGGGGTTCCACTCAGAAAATGATAGCAAGAGTCCTGGAGCAGCAAAATGCATTGTCCAAGGTTCTCTCCACAGACCGCAAAGTGCAACACTTACTCCTTTCGTGGCAGGACCTGGAGGTCTTGGAATCTGTAAACAAGGCACTCAGCCCACTCAAGGACTTCACGGATGCCTTGTCAGGTGAAAGTTATGTGAGCATATCTTGTGTGAAGCCTGCTCTGCATATTCTGAACAGCTCCGTGCTGGTGAAAGAAGAAGTGGACACTGACCTGACCAAATCACTGAAATCAAATATTCTTAGCTACCTCAATAACAAATACGAAGACACACAGGACTTGCTAAACTTAACCACTTTCCTAGACCCAAGGTTCCGATCACAAtacatccccgcagaagtgaccGAGACCTTAAAGGAACGAGTCATCTCTGAACTGATGgAAATTCATCAAAAGCAGACCCAAGTAGTCCCAAGCACTGCAGTAATGGAGAATGATAGTCTGGATGTGGAAAGTCCACCAGCTGCTAAAGCCAAGAAGAAAACTCTAGCCAGTTTCTTCCAGGAAAACACATACACAGCACCGAGAGCATCGTTATCAAGGACATTTGACCCCATGGCACAGTTTAGAGAAGCGGTGGCTGCTGAACTCAACGCTTACATTTACATGCCACATGTAGACCATGGAGAAGATCCACTGAAATGGTGGAGATTCCACAAAGTGAACTTCCCTAGGCTATGCAAACTAGCACAGAAATATCTGGGCATACAAGCAATAAGCTCTGCATCAGAGAGAGCTTTTAGCTCTAGTGGTAATGTTGTATCGAATCACCGCTCCTGTCTGAAACCAGACAAAGTGgatatgcttgtttttttgtcaaagaACCTCTGATGTGATAAGTGGAACTTTTAGAAAGAAGATTTGGAAGTACCAGTtggtcataaaaaaaagaaaaaaaagattgagaTCGTTTGAGTTTGACcatttaatgttcaaaataatttatacagAGTATGTGTTACATACTGCATAAACGTTTCTATTTGTTTAGACAGTGtctaaaatgtcttatttttgtgaaaatgtatgtttgcattaatgaaaatgttatttaatttagtaaaaaaatcacatttacacaaatacattcaaaacatGGCACTAATACAGAAAATagataaatctaaaataaatgctcattttaatcACCTATGCAATGCATCTATTAAATTATGAAGAATATGTTAGTATGCACAATTTGTGAAAACCTGAAGAGTTTTTGTTGACTTAAAAGTGGTTTTAGAATTTCATACAAATGCATTGCCACTGAAACAgcattatatttgaaatgacaCATCACagtaatgcatgcattttaaccATTAAAGCCTGTATTAAAATACTACATTTGTTAGGTTCATATCTATCAACCAATCAATGATAATCCCTAGAACATCCAAAACCTCACCCAtcacagaatggagaaaaaaaaaaaccttggagAAACCACGCTCAGTTGGGGTCCAGTTCTCCTCTGGATATATCAACATAACATTAATTTCTGTAAGTTTTGAATGAATTGTATGATTTAAATACACTATCATTGATTTCAGTCTggatttaaatattcaaacaaataaatataaaatgttttta

Function

NR:

description
PREDICTED: zinc finger BED domain-containing protein 1-like

GO: NA

KEGG:

id description
K24637 ZBED1; zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236025.1 True 3109 mRNA 0.40 3 15638512 15644874

Neighbor

gene id symbol gene type direction distance location
nup50 nup50,LOC107699201,LOC107562145,LOC107687567,LOC107601009,LOC107719874 coding upstream 36506 15595661 ~ 15602006 (+)
LOC122343379 ppm1j,LOC107668166,LOC107708158 coding upstream 282957 15342262 ~ 15355555 (+)
creld2 LOC107730684,LOC107699369,LOC107601011 coding upstream 480878 15149133 ~ 15157634 (+)
LOC122342621 zbed4,LOC107744591,LOC107663563,LOC107563622 coding upstream 495101 15136921 ~ 15143411 (+)
LOC122342863 cpne8,LOC107569221,LOC107666208,LOC108279828,LOC101886030,LOC108427072,LOC108244036 coding upstream 831146 14784476 ~ 14807366 (+)
LOC122342595 NA coding downstream 729702 16374576 ~ 16377941 (+)
LOC122342597 rab3ip,LOC107709967,LOC107689177,LOC107757202,LOC107675141,LOC107554773 coding downstream 733759 16378633 ~ 16398499 (+)
LOC122342594 LOC107709965,LOC107554744,LOC107700908,LOC107675140,LOC107569318,LOC107757199 coding downstream 753758 16398632 ~ 16427186 (+)
ptprb LOC107709971,LOC107685369,LOC107738449,LOC107575178,LOC107562139 coding downstream 791517 16436391 ~ 16457297 (+)
LOC122342226 NA coding downstream 970471 16615345 ~ 16617218 (+)
G28813 NA non-coding upstream 146330 15488076 ~ 15492182 (+)
G28797 NA non-coding upstream 263975 15374110 ~ 15374537 (+)
LOC122343380 LOC107699369,LOC107730684,LOC107601011 non-coding upstream 297008 15339618 ~ 15341504 (+)
G28745 NA non-coding upstream 523984 15114111 ~ 15114528 (+)
LOC122342648 NA non-coding upstream 774412 14863033 ~ 14864100 (+)
G28882 NA non-coding downstream 80318 15725192 ~ 15725554 (+)
G28888 NA non-coding downstream 92594 15737468 ~ 15737762 (+)
G28889 NA non-coding downstream 109939 15754813 ~ 15755128 (+)
G28890 NA non-coding downstream 195328 15840202 ~ 15840666 (+)
G28896 NA non-coding downstream 283257 15928131 ~ 15928838 (+)
G28806 LOC107744205,LOC107601002,LOC107687568,LOC107699198 other upstream 82830 15439334 ~ 15555682 (+)
LOC122342869 NA other upstream 218209 15413147 ~ 15420303 (+)
LOC122343376 LOC107699368,LOC107601007,LOC107733210,LOC105896948,LOC104933464 other upstream 424080 15157755 ~ 15214432 (+)
tafa5a fam19a5a,fam19a5,LOC107552289,LOC107689731,LOC107563619,LOC107721159,LOC106609108,LOC103356475 other upstream 1155691 14400029 ~ 14482821 (+)
tbc1d22a tbc1d22a,LOC107689730,LOC107710738 other upstream 1343894 14177430 ~ 14294618 (+)
G28891 NA other downstream 196498 15841372 ~ 15841855 (+)
G28899 NA other downstream 340345 15985219 ~ 15985726 (+)
G28982 NA other downstream 829024 16473898 ~ 16474381 (+)
atp5mj NA other downstream 1393545 17038419 ~ 17040830 (+)
G29526 NA other downstream 2655541 18300415 ~ 18301189 (+)

Expression


Co-expression Network