sapcd1 (LOC107758208,LOC107687577,LOC107601016,LOC107719876,LOC107699195,LOC107562141)


Basic Information

Item Value
gene id sapcd1
gene name LOC107758208,LOC107687577,LOC107601016,LOC107719876,LOC107699195,LOC107562141
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 15644189 ~ 15647843 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236026.1
AGTCAGGTCTTTCCAGTTTCAACTGACAGCTCGGGGGTCCATAATGACATCTTGCTGCGGGGAATAATGTCTTACAATCACAAAATCTTATCTCTGTTAAATTCTTTAGGTGAATATTTAGAGTTCTGGTTTTGCAGTTTAGGTAACGAGGCCATCATAACGACAGATGCTCTTCATCATCAGCTTTTATAGAAATCCATCACAGATAGTCATTTACATTCCTTCCGTCTGTCCTTCCCTCCGTCCCTCCCTCATTCTCACAAGGCTtcatatttctttgttttttgcctTCTCTGTTCTGATCATTCATTTTGTGTTATGTCTTGAGCTTGGTGCCAGCTTCTGAACACATGGCATGTGATTACACCGTCCTCATCATTCCTCTCCAGAACAGCCTCTACAGCCCTGACGCACTTCACTGCTTCCACTCGcTAAAGAAACGTAGAGATCTGGAAAGACAAAAAGACATCCTGTGGGCTGGACTGCAGGTAGTGGAACAAACACAGCTGTGGTACCAGAATCGCCTGAAGCTGAATTTACAAAGACAAGTTTGCTTCAGTACAGGAGACTTAGATGGAGAGGGAAGGTGGTCTTGCGCTATGCGGTCTTGTATGCAGCGTGCGAACGGGAGTTTGGGCAGTATGATGAGCGATTCCTGTGTCTGGAACAATCTGGCCCCAGAGGAGAGCGGGGGATCGGACTGGGACCTCCGGTGGAGCAATGCCACATTGGTCAAGGAAGTGAATCAGCAGAATCAACAGATTTCAGTGTTGGAACTTGAGAAGGCACAACTTCTTCAGCAGCTTGTTTTAAAGAACACCTGAATAATGacattgcacattttaaactttaattgcaaaaggctttctttttttaaatcacgcAGCGACCTGTAAATAGTTAAAGCTGATTTGAAAAGACTGAATGGTAAAAGTAATTTTAGCTCTAGTATACGCTCAGTCCACACTATTTTTTATCTTCCAGCTGAAAGGGAATTAGAGATATATgttcaatgtttttcttttcttaaactATTTGTTGATACTGTACATAAAACTCATTtgttaataatgattaaaatactttttttactacttacacaaaaacagttattgaaatataattcaaaacACGACCACATTTTTTGAAGACACTAATGGCAACATCTGAAAGCTGTCTTGAGACCTCGTTTCCTTTGTTCTCTGATGTGCATGATTGTAATATGAATGGCATTGCTCGTCAGGGccagcaacagtaactaaggagaGTGGGCCTTTGTCAATCATCAATTacataaaactgtatatattaatttcacaaaataaaaacattttatatttatttgtttgaatatttaaatccAGACTGAAATCAATGATAGTGTATTTAAATCATACAATTCATTCAAAACTTACAGAAATTAATGTTATGTTGATATATCCAGAGGAGAACTGGACCCCAACTGAGCGTGGTTTctccaaggtttttttttttctccattctgtgaTGGGTGAGGTTTTGGATGTTCTAGGGATTATCATTGATTGGTTGATAGATATGAACCTAACAAATGTAGTATTTTAATACAGGCTTTAATggttaaaatgcatgcattactGTGATGtgtcatttcaaatataatgcTGTTTCAGTGGCAATGCATTTGTATGAAATTCTAAAACCACTTTTAAGTCAACAAAAACTCTTCAGGTTTTCACAAATTGTGCATACTAACATATTCTTCATAATTTAATAGATGCATTGCATAGGTgattaaaatgagcatttattttagatttatctATTTTCTGTATTAGTGCCatgttttgaatgtatttgtgtaaatgtgatttttttactaaattaaataacattttcattaatgcaaacatacattttcacaaaaataagacattttagaCACTGTCTAAACAAATAGAAACGTTTATGCAGTATGTAACACATACTctgtataaattattttgaacattaaatgGTCAAACTCAAA
>XM_043236027.1
tctgaaatatTAGTggtttattttcaaatagtGTTAACACACCTCTTATTATTTCAGTCCAGGTTTAGTCACATTCCCTAACGTGTTGGAACAGAAAACCCATGGCAGAGACTCAGTCAGGTCTTTCCAGTTTCAACTGACAGCTCGGGGGTCCATAATGACATCTTGCTGCGGGGAATAATGTCTTACAATCACAAAATCTTATCTCTGTTAAATTCTTTAGGTGAATATTTAGAGTTCTGGTTTTGCAGTTTAGGTAACGAGGCCATCATAACGACAGATGCTCTTCATCATCAGCTTTTATAGAAATCCATCACAGATAGTCATTTACATTCCTTCCGTCTGTCCTTCCCTCCGTCCCTCCCTCATTCTCACAAGGCTtcatatttctttgttttttgcctTCTCTGTTCTGATCATTCATTTTGTGTTATGTCTTGAGCTTGGTGCCAGCTTCTGAACACATGGCATGTGATTACACCGTCCTCATCATTCCTCTCCAGAACAGCCTCTACAGCCCTGACGCACTTCACTGCTTCCACTCGcTAAAGAAACGTAGAGATCTGGAAAGACAAAAAGACATCCTGTGGGCTGGACTGCAGGTAGTGGAACAAACACAGCTGTGGTACCAGAATCGCCTGAAGCTGAATTTACAAAGACAAGTTTGCTTCAGTACAGGAGACTTAGATGGAGAGAAATCTGCAAATCGCCTGTACCTTGCAGGGAAGGTGGTCTTGCGCTATGCGGTCTTGTATGCAGCGTGCGAACGGGAGTTTGGGCAGTATGATGAGCGATTCCTGTGTCTGGAACAATCTGGCCCCAGAGGAGAGCGGGGGATCGGACTGGGACCTCCGGTGGAGCAATGCCACATTGGTCAAGGAAGTGAATCAGCAGAATCAACAGATTTCAGTGTTGGAACTTGAGAAGGCACAACTTCTTCAGCAGCTTGTTTTAAAGAACACCTGAATAATGacattgcacattttaaactttaattgcaaaaggctttctttttttaaatcacgcAGCGACCTGTAAATAGTTAAAGCTGATTTGAAAAGACTGAATGGTAAAAGTAATTTTAGCTCTAGTATACGCTCAGTCCACACTATTTTTTATCTTCCAGCTGAAAGGGAATTAGAGATATATgttcaatgtttttcttttcttaaactATTTGTTGATACTGTACATAAAACTCATTtgttaataatgattaaaatactttttttactacttacacaaaaacagttattgaaatataattcaaaacACGACCACATTTTTTGAAGACACTAATGGCAACATCTGAAAGCTGTCTTGAGACCTCGTTTCCTTTGTTCTCTGATGTGCATGATTGTAATATGAATGGCATTGCTCGTCAGGGccagcaacagtaactaaggagaGTGGGCCTTTGTCAATCATCAATTacataaaactgtatatattaatttcacaaaataaaaacattttatatttatttgtttgaatatttaaatccAGACTGAAATCAATGATAGTGTATTTAAATCATACAATTCATTCAAAACTTACAGAAATTAATGTTATGTTGATATATCCAGAGGAGAACTGGACCCCAACTGAGCGTGGTTTctccaaggtttttttttttctccattctgtgaTGGGTGAGGTTTTGGATGTTCTAGGGATTATCATTGATTGGTTGATAGATATGAACCTAACAAATGTAGTATTTTAATACAGGCTTTAATggttaaaatgcatgcattactGTGATGtgtcatttcaaatataatgcTGTTTCAGTGGCAATGCATTTGTATGAAATTCTAAAACCACTTTTAAGTCAACAAAAACTCTTCAGGTTTTCACAAATTGTGCATACTAACATATTCTTCATAATTTAATAGATGCATTGCATAGGTgattaaaatgagcatttattttagatttatctATTTTCTGTATTAGTGCCatgttttgaatgtatttgtgtaaatgtgatttttttactaaattaaataacattttcattaatgcaaacatacattttcacaaaaataagacattttagaCACTGTCTAAACAAATAGAAACGTTTATGCAGTATGTAACACATACTctgtataaattattttgaacattaaatgGTCAAACTCAAA

Function

NR:

description
PREDICTED: suppressor APC domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236026.1 False 2008 mRNA 0.36 4 15644189 15647729
XM_043236027.1 True 2150 mRNA 0.36 4 15644189 15647843

Neighbor

gene id symbol gene type direction distance location
large1 large,LOC107600999,LOC107719870,LOC107687564,LOC107699203,LOC107758207,LOC108425352,LOC103363517 coding downstream 11737 15613118 ~ 15632452 (-)
LOC122342488 LOC107744205,LOC107601002,LOC107699198,LOC107687568,LOC107562147,LOC107741716 coding downstream 55281 15555251 ~ 15588908 (-)
alg12 alg12 coding downstream 495979 15143788 ~ 15148210 (-)
brd1a brd1,LOC107744592,LOC107563621 coding downstream 507650 15124045 ~ 15136539 (-)
LOC122342646 prkcq,LOC107748461,LOC107555829,LOC107675981 coding downstream 797012 14826267 ~ 14847177 (-)
slc37a3 slc37a3,LOC107601005,LOC107758206,LOC107562143,LOC107719875 coding upstream 8232 15656075 ~ 15664306 (-)
zgc:171422 LOC107687561,LOC107758203,LOC107719867,LOC107671497 coding upstream 16600 15664443 ~ 15673234 (-)
tmem19 tmem19,LOC107758202,LOC107687559,LOC107719866,LOC107671498,LOC107600996 coding upstream 26976 15674819 ~ 15680118 (-)
LOC122343609 NA coding upstream 199126 15846969 ~ 15847087 (-)
LOC122343689 NA coding upstream 209541 15857384 ~ 15857502 (-)
LOC122342747 NA non-coding downstream 198960 15443764 ~ 15445229 (-)
G28850 NA non-coding downstream 225951 15416856 ~ 15418238 (-)
G28789 NA non-coding downstream 430738 15209684 ~ 15213451 (-)
LOC122342397 NA non-coding downstream 620326 15017785 ~ 15023863 (-)
G28738 NA non-coding downstream 640760 15003149 ~ 15003429 (-)
G28887 NA non-coding upstream 85520 15733363 ~ 15733883 (-)
G28895 NA non-coding upstream 195562 15843405 ~ 15843739 (-)
G28897 NA non-coding upstream 280300 15928143 ~ 15928900 (-)
G28916 NA non-coding upstream 730857 16378700 ~ 16383670 (-)
G28933 NA non-coding upstream 764017 16411860 ~ 16419956 (-)
kiaa0930 zgc:172139,kiaa0930,LOC107601010,LOC107719873,LOC107687566,LOC107699202 other downstream 32614 15601440 ~ 15611575 (-)
LOC122342864 rpl34,LOC107566275,LOC107573163,LOC107681344 other downstream 616526 15024587 ~ 15027663 (-)
LOC122342642 pfkfb3 other downstream 833478 14808543 ~ 14810711 (-)
LOC122342862 celsr1a,LOC107666207,LOC107710744,LOC107569230,LOC107721151,LOC107600014,LOC107689740 other downstream 939567 14687873 ~ 14704622 (-)
cerk cerk,LOC107710741,LOC107689729,LOC107552286,LOC107600034,LOC107721152 other downstream 1467447 14155492 ~ 14176742 (-)
G28898 NA other upstream 284651 15932494 ~ 15932864 (-)
G29022 chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496 other upstream 1059931 16707774 ~ 16708960 (-)
prkchb prkchb,LOC107743988,LOC107697294,LOC107701491,LOC107718442,LOC107589067,LOC107563690 other upstream 1238310 16886153 ~ 16900295 (-)
G29135 NA other upstream 1359084 17006927 ~ 17017823 (-)
xrcc3 xrcc3,LOC107755221,LOC107683971,LOC107560377 other upstream 1470500 17118343 ~ 17122129 (-)

Expression


Co-expression Network