LOC122342227


Basic Information

Item Value
gene id LOC122342227
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17720148 ~ 17726796 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236039.1
AGCAATGATAGTGTTTAAATCGATACAGATAAttcagtcttttcttttttttttacaagctttGTAAACCGAATCGAATATTATCGAGCGCAACGTAATGCTTTATCCAACGTTAACGCACGTTGTTTTTGTGACTGAAGCGCATCCACAAATGAGTAACAGACACCGTGCTCTCGTTTCGCTCTCTATTATCGGGAATTGTCGTTTCATAAACGCGAGTGGCGCTAAAATGAATTGCTTTgctaaatgattcagtgaaccGAATCGCTCGAGTCGCCGCACGTTGACGTCACATCAAACGAGAACACTAACTAGAAACTTGTTGTtagattaaatgtaaacaattatggactttaatatgtattttaaatgtacatatcgTCATTTATATGATGTGTAGTGCTAGTTTATAGTGTTATTGTTCTCTTTTAAATCAATTGTGATGTTCTTCAGGCCATGAACTATCACTCCCTTACCGTTTTTTCTGATAATTATTCTCATCTTAAACTCGACAGCGTCCCGACACAGAAAAAGCAGCGTAACGCCCGAAAGATGTCGTTCATTAAAGAGGAGCGCGAAGACATGAAGATCGAAGAAGCATTCAGCGTGAAACGAGAAGAACCCGAGGAACAAGCGAAGATGGCACTTATTAAAGAGGAGAAGGACGACTTGAAGATCGAAGAAACGTTCGGGGTAAAACGGGAAGATGCCGAGGAACAAATAAAGATTGTGTTTATCAAAGGGGAGAAAGAAGACGTGAAGATCGAAGAAGCGTTCGGGGTCAAACGTGAAGATcctgaggaacaaacagaCCTAATGGCAgcgaaagaagagaaagaagctCTCGGTCAATCTGAAATAGCACATCAACGTGAGAATCTCCAAAAGACTCAACAGAGAACCCCTGAAGATCAAACGGGAGAGAGTTTCTCTCATGAAGCAAGTCTTGAGAGGCACGTGAAGATTCACGCCGGAGTAAAGCCTTTCATATGCCTTcggtgtggaaagagtttcaccCTAAAAGAAAACTTCAACAGGCACGTGAGATCTCACACCGAGAAGAAGCCCCACGCGTGCCAGCAGTGCGGCGTGAGGTTTGCTCAACACGGACACCTGGAAAGCCACATGAAATTTCACACCGGGGAGAGCCCTTTTACTTGCCAACATTGCGGAAAATGCTTCGCTTGTAAATCGATTCTTGAGAGTCACTTAAGAATTCACACCGAAAAGCGCTTCGTCTGCCCTCAGTGTGGAAAATCCTTCAATCAACGGGGAAACCTCAAGTCCCACATCAGAATACACACCAGAGACAGCGAGAGTGCCTTCgtctgccaacagtgtggaaagagatTCACTCACATAGGAAGCCTGAACGGCCACATGAGAACTCACACGGGAGAAAAACCCTTCACGTGCCACCAGTGTGGAGACAGCTTTGCTCACAATGGAAACCTTAAACTCCACATGAGaatccacaccggagaaaagCCTTGCAGCGTGTTTAACGGTACAAAAACTAactttcatttgtcttttttcgtCACAGACATCCTGTCGCTGAAAGAGGAGCCAAAGAAGGCATTctcctgccaacagtgtggaaaaggTTTCAATAGAAAAGGCGACTTGAACAGGCTGAGAgctcacaccggagagaagccttttaCCTGCAAACAGTGTGGAAAAGGTTTCATTCAAACAGGAGACCTTAAGGTGCACATGAGacttcacaccggagagaagccttacgcCTGCCAACTGTGTGGAAGTAGTTTCACTTATGAGGTAAGCCTTAAGGTCCACATGAGAACTCACACCGGAGAAAAGCCTTACACCTGTCAACAGTGTGGAAAAGGTTTCGCTCAGAAAGTAATCCTTAACAGGCATGTGATCATTCATACGGGAGAGAGACCTTTCGTCTGCCAACAGTGTGGGAAAAGTTTCTACCAAAAAGAAAGCCTTGACAGGCACCTGAAAACTCACTCCGGAGAGAAGCATCACGTGTGccatcagtgtggaaagagtttcaacCAGACGGGAAATCTTAAAGTGCACATgaggattcacaccggagagaaacctttcGTCTGCGAGCGGTGTGGAAAAAGTTTCTCGTGTAAGGCGGACCTCGAAGCGCACTtgagagttcacaccggagagaagcccttcgcctgccaacagtgtggaaagagcttcacTAAAAGAAGAACCCTTAATAACCACATGATAATCCATACAGGGCAGAGTCCTTTCGTCTGCCAACGGTGTGGAAAGGGTTTCAGCCAGAAAGAAAGCCTTGAAAGACACGTGACGATTCACTCCGGAGAGAAGCATTACGTGTGTCAtctgtgtggaaagagtttcaacCAGACGGGAAATCTTAAAGTTCACTtgagagttcacaccggagaaaaACCTTTCGCCTGCGAACGGTGTGGAAAAAGCTTCAATCGAAAAACGAATCTGAATCAACACGTGAAGATAATTCATACGGGAGAGAGTCCTTTTGTCTGCCGACAGTGTGGACAAGGTTTCACCAGAAAAGGAAGATATGACAGGCACGTGGGAATTCACGCTGGAGAGTGCGGCGACAGTGTGGAATAAGATCACTCTGGAGAGAAGCGCTCTGTACATCATCGGCGTGGTGTAAGGAGGTGAATAAGTAAACACCCCCCCCCCCTCATGATGTGATGTCATGCAGATGTTCGGCAGAGTTTTACCAGAAGAGTGTGAAGAAGAAACTTGACTGGATCAAGAAACGTTACACATCTCCTTGTTCGTGTGCTCCGCTTGGTGTTTATTCTAAACTTTGTCCAAAGTAAAAGTGTAGGTTGTAAAGGAACCTCTGAATACCGATAAACAGCGCAGTAAACATGAACTTTCAGCTCAGTGTGCATCTTCTGTATTAAACGTAGCGCTAACCACGCACGTGAACTTACACTCATTCATCTCACTGAAGATCAAACTGAAAGTAAACTAAACCTGCTCTGGCGGAAGTGATGTCAGTGCTCTGCACGCTAGACCCAGAGCCGGTGTTTTTCTAACAATAGGACAATACAAGTTGGTACAAAACATTTGAGACTATAAAACACTGAACGTGTCGGGAACATGTCATTGTCATGTTTTCTGGAGGTTTTCCTTAGACGTAATTTCATTCAATTCCATATAGAAATAAAGACTTTACTGTACGCACTGTACACAAAATCTGCGTTCATGACGTTCACATATCATTGTATCCCAGTTTGTGCTGAATACGGTATAATCGCAATCTTGCCAGTTTGACTGTCCCTGTTGCTTCTGACTCATAGCGGgcaaagaaacattttggtCCCTCTGCCAAGGCAGCGTTGCCAATGTCAGCCATAGGATTGCTAGGTGTGTAACTAGTGATGGCCCTTTGTTCTGAAGATGC

Function

GO:

id name namespace
GO:0005669 transcription factor TFIID complex cellular_component

KEGG:

id description
ko03022 Basal transcription factors

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236039.1 True 3412 mRNA 0.45 4 17720148 17726796

Neighbor

gene id symbol gene type direction distance location
LOC122343057 NA coding downstream 358 17717764 ~ 17719790 (-)
LOC122343083 NA coding downstream 3097 17713746 ~ 17717051 (-)
LOC122343120 LOC107746441,LOC107599206,LOC107661202 coding downstream 6625 17711195 ~ 17713523 (-)
tmem165 tmem165,LOC107683960,LOC107665411,LOC107718400,LOC107755243,LOC107601909,LOC107573988 coding downstream 83859 17631493 ~ 17636289 (-)
daam1b daam1b,LOC107701451,LOC107755211,LOC107718401,LOC108412077 coding downstream 167802 17488260 ~ 17552346 (-)
LOC122343038 LOC107698808,LOC107743352 coding upstream 1726 17728522 ~ 17731397 (-)
ckap2l NA coding upstream 113268 17840064 ~ 17851149 (-)
LOC122342984 LOC100150651,LOC107755845,LOC107668749,LOC107599606 coding upstream 127905 17854701 ~ 17880796 (-)
dqx1 dqx1,LOC107597950 coding upstream 157923 17884719 ~ 17898867 (-)
thnsl2 thnsl2,LOC107597948,LOC107578849,LOC107735618 coding upstream 176780 17903576 ~ 17912432 (-)
G29408 LOC107755246,LOC107683958,LOC107718397 non-coding downstream 18775 17699424 ~ 17701373 (-)
G29388 NA non-coding downstream 77511 17642379 ~ 17642637 (-)
G29273 NA non-coding downstream 166184 17553762 ~ 17553964 (-)
G29212 NA non-coding downstream 370642 17349289 ~ 17349506 (-)
G29179 NA non-coding downstream 500695 17219151 ~ 17219453 (-)
LOC122343157 tatdn1 non-coding upstream 5607 17732403 ~ 17733334 (-)
G29420 NA non-coding upstream 23015 17749811 ~ 17814034 (-)
G29425 NA non-coding upstream 69276 17796072 ~ 17805409 (-)
G29440 NA non-coding upstream 90766 17817562 ~ 17817933 (-)
G29442 LOC107599601 non-coding upstream 92564 17819360 ~ 17822470 (-)
srd5a3 srd5a3,LOC107755245,LOC107683999,LOC107665336,LOC107601910 other downstream 81406 17637023 ~ 17638742 (-)
xrcc3 xrcc3,LOC107755221,LOC107683971,LOC107560377 other downstream 598019 17118343 ~ 17122129 (-)
G29135 NA other downstream 702325 17006927 ~ 17017823 (-)
prkchb prkchb,LOC107743988,LOC107697294,LOC107701491,LOC107718442,LOC107589067,LOC107563690 other downstream 819853 16886153 ~ 16900295 (-)
G29022 chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496 other downstream 1011188 16707774 ~ 16708960 (-)
LOC122342228 scgn,LOC107693759,LOC107757885,LOC107669120,LOC107714763,LOC107747999,LOC107663245 other upstream 7810 17734606 ~ 17744543 (-)
G29417 NA other upstream 8554 17735350 ~ 17736274 (-)
G29473 NA other upstream 243809 17970605 ~ 17979922 (-)
G29653 LOC107663329,LOC107575399,LOC107749046,LOC107758217,LOC107576964,LOC107665206,LOC107571858,LOC107671223,LOC107576424 other upstream 681764 18408560 ~ 18428343 (-)
LOC122343054 NA other upstream 928448 18655244 ~ 18661653 (-)

Expression


Co-expression Network