LOC122342232 (LOC107685875,LOC107749047,LOC107728228,LOC107671223)


Basic Information

Item Value
gene id LOC122342232
gene name LOC107685875,LOC107749047,LOC107728228,LOC107671223
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18445452 ~ 18476759 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236042.1
TGAAATAAGACATTTATTATCATGATCATttcataaattgtatttttttggaaaacatcCAAGCTTCTCCTCGTAACCTCTAAACAGGAACAAACTTgctgagaaaaagaaagtgaatgCAGATTATGTTTTACATGTGACGTTTACGTTCTccattttcaaaaactgatcattaatctttttatttgttcttgtgGGAAGATACATGAACATAATGggaaagaaaagacattttcagaAGTTTTCTAGAAACTGAACGTTTTGATCGAAGCAAGTCTTCagctgtggagcagaaagacacttccttattcatAGTCAGTGTTGGAGATCAAACTGTTCAGATCCatcatgaatgaaacacaaacatctaGAGATGAAGATAATTTTCCAGCCTGCAGctcagttcatcagaagagatcagaagcagagcccagctgtgtgtctatgaagagtgACTGCTCTATGGATCCACCAATGAAGTTTAAGAGTGAAGATTCACAGCCTGGATTCAGTTcagttcatcagaagagatcagatgcagagtccagctgtgtgtctatgaagagaGAGACATCTGTGATTCAGTCTTTAGATTTTAAGAGACGAGATACACGGCCTGTTCTCAGtcatgAAGTCCTCAACACATTTAGATCAAATCTGCTGAAGAAgtttgagtgtctgtgtgagggaACAGCGACGCAGAGAAACCCAACACTGCTGAATgagatctacacagagctctacatcacagagagtgagagaggagagatcaaTAATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGAGAAGTAACAGAGGACACAGCCATCAAATGCAGTGACATCTTCAGACCTTTACCTGGACAAGACAAAGACATCAGAAATGTGCTGACAAAGGGAatcgctggcattggaaaaacagtgtctgtgcagaagttcatctTGGACTGGGCCGAAGGGAAAGAGAATCAGGACATCCAGCTcatatttccacttcctttcagagaaatcaacTTGATGAAGGACAAAACATTCAGTCTTTTAGATCTTCTTCACGTCTTTTTCCCTGAaactaaagaaatggaaatatctaGTGATGAATGTaaagtgttgttcatctttgatggtctggacgaGTGTCGTCTGTCTCTGGACTTTAAGAGTAAAGTGAATCTGTGTAATATATCTGAGTCAGCCTCAGTGgatgtgctgctgatgaacctgattgtggggaatctgcttccctctgctctcatctggatcacctccagaccagcagcagctgatctcATCCCCTCTGAGTGCGTCCATCGAGTGACAGAGGTACGAGGCTTCAATGAGCCACAGAAGGAGGAATACTTCAGGAAGAGGATCAGTGATCAGAGTTTGGCCGACAGGATCATCTCACACCTGAAGTCCTCCAAGAGCCTTttcatcatgtgtcacatcccagtcttctgctggatctcagctGCTGTTCTTGAGAAGATCTTGAGTCGAGCAGAGACTGGAGAGATTCCCAAGActctcactcaaatgtacacacacttcctgatccttcagaccaacatcaaacatgagaaAGATTATGAGAAGAAGGTGACGGATGAAGACGTGATCCTCAAACTGGGGAAACTGGCTTTCCAGCAGCTTGTGAAAGGAAACCTGATCTTCTATGATGAAGACCTGAAAGAATGTGGAATTGATGTGACAGAAGCATCAGTTTACTCAGGACtgtgcactcagatcttcagagaggagcTGGGCTTGTTTCAGGGGAAAGTCTTCTGCTTTGTTCATCTGAGTCTTCAGGAACATCTAGCAGCTCTATATGTACATCTCTCCTTTACAATCaacaagaaaaatgtgtttgaccGAATCAAACAATATTCTTTCTTTAATGTCTTACACATAATTAGAATGTTATCTAAGCTGCATCAGAGAGCTGTGGATGAGGCTCTAAAGAGTAAGAATGGACACCTGGATCTTTTCCTGCGGTTTCTTCTGGGTCTCTCAGTGGAGTCCAATCAGACTATCTTAAGAAAACTACTgacacagacaggaagctgctcctacaacaaagagaaaacagttcatttcaTCAAACAGAAGATAAGGGAAAATCACTCTTCAGAgaaatccatcaatctgtttcactgtctgaatgaactgggtgatgattcactgatgcaGGAGATCCAGCGTTATCTAAAATTTGGAGAAATAGGAGAAACTAAGCTCTCCTCTTCACAGTGGTCAGCTCTGGTTTATGTTTTGCTGACATCAGAGCAGAAGATGGATAATTTGGATCTAAAACAGTTTGTTGGAGAACAACATACAGGAGATGAAGTTCTTCAGTATCTGTTACCTGTAGTTAAAGAATCCAGATCAGTTCGGTTATGTGGATGCAAACTCACTGCTCAGTcttgtgaaagtttgtcttcagttttacaatcctcaaactcaaacatcctgagagagctggacctgagtaacaatgacctgcaggattctggagtgaagctgctctctgaagaactgaagagtccaaactgtcatctggagattctgagGCTATGTGGATGCAAACTCACTGCTCAGTcttgtgaaagtttgtcttcagttttacaatcctcaaactcaaacatcctgagagagctggacctgagcaacaatgacctgcaggattctggagtgaagctgctctctgaaggactgaagagtccaaactgtcatctggagattctgagGCTATGTGGATGCAAACTCACTGCTCAGTcttgtgaaagtttgtcttcagttttacaattaaactcaaacatccggagagagctggacctgagtaacaatgacctgcaggattctggagttaagctgctctctgaaggactgaagagtccaaactgtGAGTCACCACCTGGTCACGATCCCGTTCACACGAATACTAATTACCCGCACCTGAAGAGCGCTACTCTGGGCGGAAGCCCCCTGGACGACCAACAGAGCCTTGAACACTTCAAAGAGGTATTCGGCCAACCCCTCACCAAGTTCTCCGTGCACGATGAACTACTACAGCTCCCGCAGGCAGACCTCCCAGACTCAATCCAGATGCACATGGCTATCTACTATGACAACGTAGGCTTGGAGAACTTCATGAACGAGATCTTCCGAGACATGCTTCATAAGTTCGTCATCGTCTATATTGACGATATCCTCATATATTCACCCAACCTGTCCGCACGCCGTCATCAATCCACCATTCACTTCCTCGGGTACATAATAACTCCCTCGGGGGTCAGCATGGACCCCAAGACAGTAGAGGCGTCCACACCTCTCCGGGATCGAGGCATCCAAGTAGCTACCGAACCCTCTCACTCCTCCGAGATCGCTACTGGTGGCCAGTacactgaaataacTTATTGTCACAAGGAtcactgctgtgttttcagattgtctggctgtatggtgacagagaaaggctgtggttatgtgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatcctggagattcaggagtgaagctgctctctgaaaaactagAGGACTCAACCTGCTCATTGGACAAACTGAATGTTGATCATGGAGGAGACACTAGGATTATAGCAGGACTGAAGAAATGGGTGTGTTttctcacactggatccaaacacagcaaacactcGTCTCAgactgtctgaggagaacagagaggtgacgtgtgtgtatcagtctcagtcgtatcctgagcatccagacagatttgatgtgTATCTTCAGGTGTTGtgtggagagagtgtgtgtggacgctgttactgggagactgagtgCAGTGGACATGTGGagatatcagtgtcatataagaacatcagGAGGAAGAGACAGGGTAAAGAGTGTTGGTTTGGTcgtaatgatcagtcctggagtttgtgCTGCTCTCCTCTCAGTTATTCATTCAGACACAATGACATAAAGACTGATCtctctgtgaagcccatcaGCATCAGAAGAAGAACAACAGGAGTGTATAATGATATCTCTAGAGTtggagtgtatgtggatgagagcgcaggaactctgtccttcttcagcgtctctgacacaatgagactcatccacacagtccagaccacatttaCTCAGACCCTCTGTCCTGGgtttactgtttattataaatcatcagtgaaactgtgttgataAATTAGAAGAGACTGATGAGATTCTACCCATAatgctttgagctgcatgatgaaTGAGTAACAGTGAGATGTTATGAGTCTCTTCAAGACATTAATACTGCAGCTGAACTTCCgtagaaacagaaatataaaaatattttataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatatatatatatatataacatatgtcAGAAATACTCCGACAGAtcacttagtgtgtgtgtgtgtgtgtgtgtgtgtgttttatttgttgtgtctcatttatttgttttaattctgtTCTTTGGGAGCCCTCACTCAATTACTAGCTGTGCTCAACCCTTCTGCATCCTCTACTATAatttcctgtctgaggactttATAACTCTATGGATGGCCTTTATGCTCTCACTGGAAAGTATTTGCCAGTCTATCTGTCTTACCAAGCGTTTTACCTGTTATCTCTGATTACTTTTCCTGTGTATGATCACTGCCTGTTTTCCTGTTTATCGATTCCCAGATTTGCCCTCTGTATTTTTTGCCTGATTAGACTGATAATCTGGTAGACCCATTAGACCCATTGCCTGCCATTGCCTTTTGGATTTCCCCTGTACCTGTCGACGGATTGGACTTCCTTTGCAATCTTGACTCTCTGCCTGCTTTAATTATTGCCCTTGTGATTATTGCCCTTGCGTCTAATAAACTATCACACACAGATTGTAACTCAGCGTTACAAAATACTTTGCCTCCCACAAATTCAGCAGACGTTTCCAATTTGCAAGTGGCGTTTGCTTACTAAAATGAATTACTAAGAAGCTACCAGGAACAACTCACCAAGCTGCAGTCCATCAACAATGCAGGATATCTCAACACAACTTCTCTATGTCACCCAAGGGAAGTGACCAGCCACTGAATACGCCATCAAATTCAGAATGCTACCAACTTAAAGTGATTGGAACGTCATTGCTTTAAAAGCCGTTTTTTACTGAAATTTGACCAATGAGCTCCAAACTGAACTGGCCTATAGAGGTGAGGAATTGGAATTACTTCCCTAAAAACCCATAGCTTTTCTCACTTCCAGTATGAGAGTCTAGAAACTAACCAACCAGCAAAGCCAAAGCCACGAAACTCCCTCCACAGCAATCCGTCGACTACGCTATCGACCTGCTTCCCAATGCCATGCCTCGTACGAGTAAGGTCTACCAGACTGTAGAGAACTGAGAGTCAGGTAATGGAGCAATACATTTCGGAGGCCCTCAAATCCGCCCTTCTGCGTCCCCAGCTGCTGCAGGATTCTTCTTTGTAAAAAAGAAGGACGGAGGGTTGCGTCCCTGCATTGATTACAGAGGACTCAACAATGTCATGAGAAAATTCCGTTACCCACTTCCCTTAGTCACTTCTGCTCTGAAATAATTACGGGAAGCTACCATATATAACAAGCTAGACCTAGGAAGTGCTTACAAACTGATCAGAATTAAGGAGGGTGACAAGTGGAAAACAGCTTTTCTCACCACAAGGGGTATGGTGAGATATGATGCCATATGGGCTCGCCAACTCACCAGCCGTCTTTTGATCTTTCATAAATGAGATCCTCAAGGGTATCATCAACCAGTTTTTTATTGTCTATATAGATGAAATCCTCATCTACTCCTGAGTCTGAAGCCGAGCACATCACTCCCGTTAGGACCGTTTTATTCTTGAAAACAAACTGTATGTCAAAGCCAAGAAATGTGAATTTCATGTCAgtaaaactttcaaaaactttCAACTGTCAGTAAAAGAATACCGTAACTGAATGGCCACAACCCTCCACCGTTGAAGAACTGCAAAGATTCTTAGGCTTTGCAAATTTTTACAGATGGTTCATATGTAAATAAAGTCTGATTGCAGCCCCCCTGATATCGGCATTAAAGGGAAAACCTGCTAAGTTGAAGTGGACTCAGGGGGCTAGCCAAGCCTTTACCTCCCTGAAAGAAAGATTCACATTGGCCCCCATTCTAAAATACCTTGTCCCTGACTCGCCATTTTGGAGGTGGAGGTAGATTTGTCTGAGTGGCATAGGAGCCGTTCTCTCACAGAGGTCCAATCAATTAGGCAAACTACACCCTTGTACCTTCTTTTCAGGGAAACTCACATCAGCAGAGAGAAGTTATGATGTGGGCAACAAGGAACTCCACTCCATGAAAGCAGCTATCGAGGAGTGGCGACACTGGCTAGAAGGGGCTGTCCACCCATTCCAAGTCATTACAGATTATGAGAATCTTGAAATCTTGAAATCCACGGTTCTGCGCTtagcacagaaaacattctgtgcaTAGCACTTAGGTTTTTTTGCGTCTGgccattttttgtacagtgtgggcAAATCGGAGCATGTGGGAAAGGCAACTGTGTGTAGGGCTGTTCGTTCAgtatgtctggcacttaaacagttcttacccacgtttgtacagttccctggccataaacctctgcttgttattaaagacgaattccacagagtggcaggtttgt

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236042.1 True 6740 mRNA 0.43 17 18445452 18476759

Neighbor

gene id symbol gene type direction distance location
LOC122343150 LOC107570416,LOC107749047 coding downstream 14018 18375327 ~ 18431434 (-)
wbp1 LOC107670394,LOC107728527,LOC106563291 coding downstream 226924 18213547 ~ 18218528 (-)
mtfp1 mtfp1,LOC107565646,LOC107566856 coding downstream 243321 18199050 ~ 18202131 (-)
LOC122343062 NA coding downstream 248931 18193309 ~ 18196521 (-)
tbx3a LOC107742157,LOC107597930,LOC107687999,LOC107728866,LOC107566860,LOC107670392 coding downstream 378287 18059325 ~ 18067165 (-)
ptprr ptprr,LOC107684538,LOC107709966,LOC107690749,LOC107747646 coding upstream 49247 18526006 ~ 18544653 (-)
LOC122343050 LOC107685395,LOC107754219,LOC107554754 coding upstream 91404 18568163 ~ 18571675 (-)
LOC122342233 LOC107685397,LOC107554760 coding upstream 94946 18571705 ~ 18579003 (-)
LOC122343042 NA coding upstream 102892 18579651 ~ 18583442 (-)
LOC122343043 LOC107724037,LOC107685393,LOC107554738 coding upstream 110904 18587663 ~ 18591387 (-)
G29656 NA non-coding downstream 35557 18380990 ~ 18409895 (-)
G29487 NA non-coding downstream 459634 17985013 ~ 17985818 (-)
G29457 NA non-coding downstream 504663 17873152 ~ 17940789 (-)
LOC122343170 NA non-coding downstream 615509 17828586 ~ 17829943 (-)
G29445 NA non-coding downstream 621188 17823219 ~ 17824264 (-)
G29680 LOC107747644,LOC107709964,LOC107690747,LOC107687572,LOC107562152 non-coding upstream 79741 18556500 ~ 18559281 (-)
G29682 trim24,LOC107562152,LOC107690747,LOC107747644 non-coding upstream 86395 18563154 ~ 18564445 (-)
G29720 NA non-coding upstream 234989 18711748 ~ 18712103 (-)
LOC122343197 NA non-coding upstream 261056 18737815 ~ 18740781 (-)
G29726 NA non-coding upstream 267842 18744601 ~ 18747308 (-)
G29653 LOC107663329,LOC107575399,LOC107749046,LOC107758217,LOC107576964,LOC107665206,LOC107571858,LOC107671223,LOC107576424 other downstream 17109 18408560 ~ 18428343 (-)
G29473 NA other downstream 465530 17970605 ~ 17979922 (-)
LOC122342228 scgn,LOC107693759,LOC107757885,LOC107669120,LOC107714763,LOC107747999,LOC107663245 other downstream 700909 17734606 ~ 17744543 (-)
G29417 NA other downstream 709178 17735350 ~ 17736274 (-)
srd5a3 srd5a3,LOC107755245,LOC107683999,LOC107665336,LOC107601910 other downstream 806710 17637023 ~ 17638742 (-)
LOC122343054 NA other upstream 178485 18655244 ~ 18661653 (-)
LOC122342944 LOC107581743 other upstream 216243 18693002 ~ 18735640 (-)
LOC122343082 NA other upstream 422048 18898807 ~ 18902552 (-)
LOC122343130 NA other upstream 439567 18916326 ~ 18917533 (-)
G29787 NA other upstream 454777 18931536 ~ 18931875 (-)

Expression


Co-expression Network