LOC122342233 (LOC107685397,LOC107554760)


Basic Information

Item Value
gene id LOC122342233
gene name LOC107685397,LOC107554760
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18571705 ~ 18579003 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236043.1
CGCCGCTGCGTCTGTTGTGATTCGGCTGCAGAAAGGTTTGCGAGtttaagcatttaaagggaTTTTGATTcgtttctttttctaaaaacgACGTATGATCGCTTAATATTCACTGAATGCGCATTTTAATATCTTGGGCGAGTAAAGAAATGCGTGCAACGTCGCGTGAAAGCAGTTTAGTGTAAACAGTTGaaggctgcaaaaaaaaattatacagatTTCTTTATCAAAATCTGTTCCTGCGGCTCCAACACACTTTCACACgagtttatattaattaatttttgcgTTGTCACCTCAAAGATGGCGTTTATTAAAGAAGAGCGCGAAGACGTGAAGATCGAAGAAGCGTTTCGAGTCAAACAAGAAGATGCCGAGGAACAAACAGtcTCGCCGGCTTTGAAAGAGGAGAGTCCAGAAGAGGCTCGAGATTTCACGAGTGGCCCTCCGACGTCTTCGCGAGCGGTTATCAAAGAGAAGTTCGCCTGCTTCCGGTGCGGGAAGAGTTTCTCTCAAAAGGGAAACCTCAACGTGCACGCGAAGACGCACGCCGACGAGAAGCCGCACGCGTGCGCGCAGTGCGGGAAGCGCTTTACCCTCAAAGGGAACCTGACCGCGCACGTGAAGACCCACGCTGGAGGGAGCCCTCACACGTGCAGGCAGTGCGGGAACAGCTTCTCCCGCAGGGGGAGCCTGAAGACCCACATGCGGCTCCACACCGGGGAGAAGCCCTACACGTGCCCGCAGTGCGGGAGCCGCTTCACGCGCAGGGGGACGCTCAACACccacatgaggatccacaccgggGAGAAGCCGTACGCGTGCGAGCTCTGCGGGAAGGGCTTCACGCGCAAGGAGAGCCTGAAGACGCACGCGAGGGTCCACACCAGAGAGAAGCCGTACGCGTGCGCGCTGTGCGGCAAGGGCTTCACGCGCAAGGGCACGCTCGACGCGCACGCGAGGGGTCACGCCCGGCCCCTCCTCTCGCGAGGCCGCGCCGGGGAGCGCGCGAAGCCCTTCGCGTGCCGTCACTGCGGGAGGAGCTTCGCGCTCAACGGAAACTTCAAGGTtcacatgaggatccacaccgggGAGAAGCCGTACGCGTGCGAGCGCTGCGGGAAGGCGTTCAGGCACAAGGTGACGCTCGACTACCACGCGCGTGTCCACGCGAGGCCGGACGGGTTCCCGTGCCACCGGTGCGGAAGGAGCTTCGCCGACGGCGCGGAGCTTGAGGGTCACGTGGCCACGCACCGCGGCGACACCGGAGCGCGCGGCGACGTCATGTGCCGCTACTGCGGGAAGGCTTGCGTGAACGCGGCGAACCTCGAGATTCACGTGCGGGtgcacaccggagagaagccctacGTCTGTCTGCGGTGCGGAAAGAGCTTCTCGCGGAAAGGGAACCTCCAGACGCACCTGAGGCTGCACACCGGGGAGAAGCCGTACGGGTGCCTCCGGTGCGGGGAGAGCTTCACGTACCAGAGAGACCTGGACGCTCATCTGCGAACTCACTCCGGGAAGAGCCCGCGGGCTCCCGAGCGGGACGGGAGGACCGGAAGGAGGGGTTTCGCGAATCGCCCCGGAGGAAAGAGACTCGGTTCCGTCGAGCGCCGCCGCAAAACGGTCCCGCCGCAAGTTAAAAGTCGCGCGCGCGTGACGTCATATGTGTGTTCCGCGTGCGGGAAGGGCTTTAAATGGCTCGGAAATTTAAGGTGGCACCagaaaatgtgtattgtgaGAAaaacagaaaaaaaccccGAGACGCCACCGAGCTCGCGTAACGTTATAAAGATGtcgtttattaaagaggagaacGAAGACGTGAAGATTGAAGAAGCGTTCGGGGTGAAACGAGAAGAAACCGAAACACAAACGGgcctaacgtttttaaaaaaggaaaccCAAGAACTGAATAAAACGGAAGCGAATCAGCCTGACGAGGATCAGGACTTTGTGACCGGAGAACAATCGGTCACTTACTCTCAAAAAAAGGGTCAAAAGACAGAATCGGTCGGTTTTTTCACTTGTCGTCAGTGTGGAAAGACGTTCAATCAGAAGCAAAACCTTGATGTCCACATGAGGATCCACAACGGAGAAAAGCCTTTCAGCTGCCAGcagtgcggaaagagcttcACTCAGAAGCAAAACCTCAAAGTCCACATGAGAGTCCACACGGGAGAGAAGCCTTTTACCTGCGCTCAGTGTGGACAGAGCTTCACGCACAAAGGAAACCTCAACGCCCACGTGAGAGGCCACACGGGAGAGAGCCCGTACACCTGCAGGCTCTGCGAGAAGAACTTCTCGCGAAAAGAGAGCCTCAAGACTCACACGAGAATCCACACCGGGGAGAAGCCGTTCGTGTGCGgtcagtgcggaaagagtttcagGTGCAAAGAAAACCTTAATTGCCACGTGAAGATCCACTCGAGAGAGAACCGCTGCGTGTGTCAGCGGTGTGGAAAGAGCTTCCCCGACAGGAGCCACCTTCGGAGCCACGTGGCGGCTCACGTCGGGGAGAAGCCTTTCATGTGCCATCACTGCGGAAAAACGTGCACGAACAAAGCGATCCTTGAGATTCACTTGAGggtccacaccggagagaggcCTTTCAGCTGccctcagtgcgggaagagtttcacaAATAAAGGGAACCTTAACATTCACACGAGgcttcacaccggagagaagcccgTCACGTGTCTCCAGTGCGGAAAGTGTTTCACGTATCACACAGACCTGAAACGCCACTTGCAAACCCATTCGGAAAAGAAACCGTAGCGCGCCTCGGCGTCGCCAACGACGGATGGGTTCGTCTCAAAATAGCGCAGTTGAGCACACTTATCTTAAAAAGGACAGAAggatggggtttttttatcGAGTACGAAATTGGTAAACATGGAGCACTTGAAGTACGTTAAGGAACTGGACTTTTCACACTTTCCTTAACTTGTGCGTTTGATTCAGTTTAGTACATTGAAATTAACGCATTGGATAAGATTCGTCTGGCTTTAAAAAGTCTGCAGTGTGAATGTAGAAGCTAAACGAGATGATGTTGCCCTTTTATGCTTTAATGCTTTAGCTATGGCTGCAGTCCAGCGGGGGTCCGTTCTTCGTACTTCGCTAACCAGGCTGGATTTGATCTGCGATTTTCTCGATCTTGGGTCGTTCTGTCCTTCGAAGCTCGTCCTGGACTTTCCTCTCTTGAATCTGCTCTAAACTTAGTTTTCCAACAGCAGATGGATGTAGTTCTCTTCGAACCGTTATTTTAATCGACGTCTGCGTAAGGAACCAAAGGCGTAACTCTTTCTGAGAAAACACCTCGATGTGAAGCGAGCGAGATCCAGGTGACCTGCTGGTGTAAAGACGGCGTTTgttaaagaggagagagaagacaCGAGCATTGAAGAAGTCAGACAAGAAGATGCCGAGAACTGCTTTCCATTCTCAAAGGAGTGTCCtatgaagATCTGATGGTGTGGATGGAAAAGACGAAAGTGCTGTGTAAAACCGAAGAGGAAGACCGGGGAAAAATCAAGACTTCTTCACGAAAAAGGGCTCAAAATACAGGAACCGAAAGTTTCGCCTGCCAGCGATGTGGGAAAAGCTTCCAACGGAAAAGGAAACCTTAATtcacacgggagagaagccCTTCACGTGTCCTCAACGTGGGATGGGTTTTATTCAAAGAGAGATGCTCGAGAGtcacatgaggatccacaccggagagaagccccTTCACCTGCCGGCGGTGCGGAAAGAGCTTAAGCCAAAAGGGAAACTTCAGGGTCCAAGCGAAAATCCACGTTGTGGAAAAGCCAGAGCTTCGAGTTGGGTTTCAATGGCGTGAGAGCGGTGGCTAGCCGACTCCATGCTCGTGCCTCAACGCGGTTTGGCTGGGCGACCGATCGGAATGCGCTCGAGAGTTCGCCATCCTTGCGAACGTCGGTTCTGACCGCATCGGTTCCCAAACGTCTCCGGGACGCTCGGCGGTCGCCGGCGGAGTGGGTCGTTTTTTTCGTCAGGGCTGTTTGCGATGCAGACCGCGCACAAATTAATGCGAGCATTAATTGAGCATTGATGCGAAGAGTATTAAATAAAGTTACATTTGCGATGACCACATGCTGTTAATAGGCCCAATCGTTTAAGAAAGAAGGAAGCCAAAGTTTAAAACGATCGCCTTACTTTAGCCCGATCcaccacagtatttttttttttttaatttgagtatGGTTTTTTGCAGGAAACAAATAGGAAACGGACGTTTTAAATGTCGTTGTTATTCAATCTTTTCGGATTTCTCGTTCAGAAACGAACAATGTTGATTCATCTATATTGATCTATAATTAGTAAGCTGTAAGGAAAGTTTACCTTCTTTTAATCACTTCTATGAAAAGCGATATGAACACAAAAAGATCGCCTCTTTTTTCCAGGCCTATATTCAATACTCATTCAAACTTTATTCACTCGAAAGACAAAACTAACAGCTTGTTCAAGTAAGATTTCCATCCTTGAAGTACTGTTTgtttcacatttgttttgtgtttttagtctATCGCTTTTataatgatgatgtttttttttatttgtattatctgtagcttaaacatttttgtgattCGAA

Function

NR:

description
PREDICTED: gastrula zinc finger protein XlCGF7.1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236043.1 True 4627 mRNA 0.51 6 18571705 18579003

Neighbor

gene id symbol gene type direction distance location
LOC122343050 LOC107685395,LOC107754219,LOC107554754 coding downstream 30 18568163 ~ 18571675 (-)
ptprr ptprr,LOC107684538,LOC107709966,LOC107690749,LOC107747646 coding downstream 27052 18526006 ~ 18544653 (-)
LOC122342232 LOC107685875,LOC107749047,LOC107728228,LOC107671223 coding downstream 94946 18445452 ~ 18476759 (-)
LOC122343150 LOC107570416,LOC107749047 coding downstream 140271 18375327 ~ 18431434 (-)
wbp1 LOC107670394,LOC107728527,LOC106563291 coding downstream 353177 18213547 ~ 18218528 (-)
LOC122343042 NA coding upstream 648 18579651 ~ 18583442 (-)
LOC122343043 LOC107724037,LOC107685393,LOC107554738 coding upstream 8660 18587663 ~ 18591387 (-)
LOC122342949 NA coding upstream 15316 18594319 ~ 18604310 (-)
scgn scgn,LOC107747999,LOC107663245,LOC107693759,LOC107757885 coding upstream 83855 18662858 ~ 18668809 (-)
LOC122342979 LOC107694482,LOC107578888 coding upstream 257615 18836618 ~ 18840716 (-)
G29682 trim24,LOC107562152,LOC107690747,LOC107747644 non-coding downstream 7260 18563154 ~ 18564445 (-)
G29680 LOC107747644,LOC107709964,LOC107690747,LOC107687572,LOC107562152 non-coding downstream 12424 18556500 ~ 18559281 (-)
G29662 NA non-coding downstream 105868 18435645 ~ 18465837 (-)
G29663 NA non-coding downstream 110392 18436567 ~ 18461313 (-)
G29656 NA non-coding downstream 161810 18380990 ~ 18409895 (-)
G29720 NA non-coding upstream 132745 18711748 ~ 18712103 (-)
LOC122343197 NA non-coding upstream 158812 18737815 ~ 18740781 (-)
G29726 NA non-coding upstream 165598 18744601 ~ 18747308 (-)
G29736 NA non-coding upstream 204602 18783605 ~ 18783915 (-)
G29738 LOC107710542 non-coding upstream 207193 18786196 ~ 18786692 (-)
G29653 LOC107663329,LOC107575399,LOC107749046,LOC107758217,LOC107576964,LOC107665206,LOC107571858,LOC107671223,LOC107576424 other downstream 143362 18408560 ~ 18428343 (-)
G29473 NA other downstream 591783 17970605 ~ 17979922 (-)
LOC122342228 scgn,LOC107693759,LOC107757885,LOC107669120,LOC107714763,LOC107747999,LOC107663245 other downstream 827162 17734606 ~ 17744543 (-)
G29417 NA other downstream 835431 17735350 ~ 17736274 (-)
srd5a3 srd5a3,LOC107755245,LOC107683999,LOC107665336,LOC107601910 other downstream 932963 17637023 ~ 17638742 (-)
LOC122343054 NA other upstream 76241 18655244 ~ 18661653 (-)
LOC122342944 LOC107581743 other upstream 113999 18693002 ~ 18735640 (-)
LOC122343082 NA other upstream 319804 18898807 ~ 18902552 (-)
LOC122343130 NA other upstream 337323 18916326 ~ 18917533 (-)
G29787 NA other upstream 352533 18931536 ~ 18931875 (-)

Expression


Co-expression Network