LOC122342235 (LOC107685875,LOC107749047)


Basic Information

Item Value
gene id LOC122342235
gene name LOC107685875,LOC107749047
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18758554 ~ 18782810 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236045.1
GACTTCGGCTAATAAGGGAACACCTGAGGAAATCCGGAGGAGGCGTGGCTTCGAGCTTCACGCGCTTCAGTTTGGGACACAGATACAGTGGTCTGTGTTTGCTTCCACTAGCTGCTCGTGAAACGGAAGTTTAGCACATTAGAAGTAAGGACGTCCTCGTATTTACTTCcgcattgaaaaataaattgcgTAGGTGTGTGTTCGTTGAATGACCtcaaagtaccgcgagagcgAAAGTAAAGAGAACACGGAACCGTCAGTCGATCTCGCGATACTTTGATATAACATCAAAGTACCTTTGTACACCTTGTACTTTACGTGTGACGCTTACACCTGATCGTTTTTTCTGATCGAAAAACCTTATCATTAACCTAAACGTACTTATTAATGTTTATGCGGGGACATACATGAACATgaagagaaaacaaatacattttgagaagttgtctagaaactgaacattttgatcaaagcaagtcttcagctgtggagcagaaagacatttccttattcatAGTCAGTGTTGAAGATCAAACTGTTCAGATCCatcatgaatgaaacacaaacatctggAGATGAAGAGTATTCTCCAGCCTGCAGcTCAGTTAATCAGAAGACATCAGAAACAgagcccagctgtgtgtctatgaagagtgACAGGTCTATGGATCAGCCAATAACATTTAAGAGTGAAGATTCACAGCCTGGACTCTGttcagttcatcagaagagatcagaagcagagtccagctgtgtgtctatgaagagaGAGACATCTGTGATTCAGTCTTTAGATTTTAAGAGAGGAGATACACGGCCTGTTCTGAGtcatgAAGTCCTCGACACATTTAGATCAAATCTGCAGAAGAAgtttgagtgtctgtgtgagggaACAGCGACGCAGAGAAACCCAACACTGCTGAATgagatctacacagagctctacatcacagagagtgagagaggagagatcaaTAATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGAGAAGCAACAGAGGACACAGCCATCAAATGCAGTGACATCTTCAGACCTTTACCTGGACGAGAAAAAGACATCAGAACTGTGCTGACAAAGGGAGttgctggcattggaaaaacagtctctgtgcagaagttcattctggactgggcCGAAGGGAAAGAGAATCAGGACGTCCAGCTcatatttccacttcctttcagagaaatcaacTTGATGAAGGACAAAACATTCAGTCTTTTAGATGTTCTTCACCTCTTTTTCCCTGAAActaaagaaatagaaatatccagtgatgaatataaagtgttgttcatctttgatggtctggatgagTGCCGTCTGTCTCTGGACTTTAAGAGTAAAGTGAATCTGTGTAATATATCTGAGTCAGCCTCAGTGgatgtgctgctgatgaacctgattgtggggaatctgcttccctctgctctcatctggatcacctccagaccagcagcagctgatctcGTCCCCTCTGAGTGTGTCCATCGAGTGACAGAGGTACGAGGCTTCAATGAGCCACAGAAGGAGGAATACTTCAGGAAGAGGATCAGTGATCATAGTCTGGCCGACAGGATCATCTCACACCTAAAGTCCTCCAGGAGCCTCttcatcatgtgtcacatcccagtcttctgctggatctcagctGCTGTTCTTGAGAAGATCTTGAGTCGAGCAGAGACTGGAGAGATTCCCAAGActctcactcaaatgtacacacacttcctgatccttcagaccaacatcaaacatgagaaGGACTATGAGAAGAACCTGACAGATGAAGACATGATCCTCAAACTGGGGAAACTGGCTTTTCAGCAGCTTGTGAAAGGAAACCTGATCTTCTATGAAGAAGACCTGAGAGAGTGTGACATTGATGAGACAGAAGCATCAGTTTACTCAGGACtgtgcactcagatcttcagagaggagcTGGGCTTGTTTCAGGGGAAAGTCTTCTGCTTCGTTCATCTGAGTCTTCAGGAACATCTAGCAGCTCTATATGCACACCTATCCTTTACAATAAAGAAGATAAATGTGTTTGACCAAATCCAACAAAATTCTTTCTTTAATGTCTTCTTTCATGAAATTAGACCATTATCTGAGCTGCATCAGAGAGCTGTGGATGAGGCTCTGCAGAGTAAGAATGGACACCTGGATCTTTTCCTGCGGTTTCTTCTGGGTCTCTCAGTGGAATCCAATCAGACTCTCTTAAGAAAACTACTgacacagacaggaagctgcTCCTACAACAAAGAGGAAACAGTTCGGTTCATCAAAGAGGAGATTAGGAAGAATCACTCTTCAGAGAAATACATCAATCTGTttcactgtctgaatgaactgggtgatgattcactgatgcaGGAGATCCAGGGTTATCTGAAATCTGGAAAAATAAGAGAAGTCTATCTCTCCTCTTCACAGTGGTCAGCTCTGGTTTATGTGTTGCTGACATCAGAGCAGAAGATGGATGTTTTTGATCTAAAAGAGTTTATTGGAAAACATATAGGAGATGAAGTTCTTCAGTATCTGTTACCTGTGGTTAAAGAATCCAGATCAGTTCGGCTATGTGGATGCAAACTCACTGCTCAGTcttgtgaaagtttgtcttcagttttacaatcctcaaactcaaacatcctgagagagctggacctgagtaacaatgacctgcaggattctggagtgaagctgctctctgaaggactgaagagtccaaactgtcatctggagattctgaggctatgtggatgcaaactcactgctcagtcttgtgaaagtttgtcttcagttttacaatcctcaaacatcctgagagagctggacctgagtaacaatgacctgcaggattctggagtgaagctgctttctgaaggactgaagagtccaaactgtcatctggagattctgagGGTCCACCCACCGGCCGGAATCCAGTGGCTGGTCGAAGGCTGGATGCatgagtgttttttcacactggatccaaacacagcacacactgaactcattctgtctgaggagaacagagaggtgaagtgtgtgtctcagtctcagtcgtatcctgatcatccgGACAGATTTGATGGTGTGTATCCTCAGatgttgtgtagagagagtgtgtgtggacgctgttactgggagactgagtggagTGGAGGTGTGTTTATATCAGTGTCTTATAAGAACATCAGGAGGAAGggtgaagagtgtgtgtttggaaataatgatcagtcctggagtttgatctGCTCTCCTGACAGAtactcattcagacacaataagatagagactgatctctctgtgaagcccatcatcatcagaagaagaagaacaggagagTATAAAGATATCTCTAGAGTAGGAGTGCatgtggatgagagcgcaggaactctgtccttcttcagcgtctctgacacaatgagactcatccacacagtccagaccacattcactcagacactctgtcctgggtttggtttttattttcatggttaCATCAGCCACGTGcacgttgaagtcccccagcaggacgacaGAGTCCCAGGTCAGAAAACTTTCCAGCAGCCCTTCTAG

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236045.1 True 3616 mRNA 0.44 10 18758554 18782810

Neighbor

gene id symbol gene type direction distance location
LOC122342234 LOC107685386,LOC107554769,LOC107712902 coding upstream 103449 18646798 ~ 18655105 (+)
si:ch211-166e11.5 LOC107685387,LOC107554747,LOC107712904 coding upstream 111626 18634109 ~ 18646928 (+)
LOC122343000 LOC107554745,LOC107700104,LOC107746770 coding upstream 126117 18627425 ~ 18632437 (+)
LOC122343002 NA coding upstream 131283 18619551 ~ 18627271 (+)
trim24 trim24,LOC107709964,LOC107687572,LOC107747644,LOC107562152,LOC107690747 coding upstream 193188 18556569 ~ 18565366 (+)
LOC122343102 LOC107747636,LOC107554732 coding downstream 22640 18805450 ~ 18809963 (+)
LOC122343011 NA coding downstream 28050 18810860 ~ 18814594 (+)
LOC122342961 NA coding downstream 41115 18823925 ~ 18832593 (+)
LOC122343055 LOC107554755,LOC107730198,LOC107663244 coding downstream 83043 18865853 ~ 18869783 (+)
LOC122343078 LOC107730199 coding downstream 112091 18894901 ~ 18897790 (+)
G29600 NA non-coding upstream 93471 18662860 ~ 18665083 (+)
G29591 NA non-coding upstream 155238 18600428 ~ 18603316 (+)
LOC122343196 NA non-coding upstream 164438 18591447 ~ 18594116 (+)
G29548 NA non-coding upstream 292717 18441631 ~ 18465837 (+)
G29544 NA non-coding upstream 297959 18435643 ~ 18460595 (+)
G29627 NA non-coding downstream 2235 18785045 ~ 18785246 (+)
G29633 NA non-coding downstream 32073 18814883 ~ 18815278 (+)
LOC122343164 NA non-coding downstream 120425 18903235 ~ 18907824 (+)
G29777 NA non-coding downstream 149509 18932319 ~ 18932690 (+)
G29797 NA non-coding downstream 184577 18967387 ~ 18967714 (+)
G29545 NA other upstream 297237 18436460 ~ 18461317 (+)
G29526 NA other upstream 457365 18300415 ~ 18301189 (+)
atp5mj NA other upstream 1717724 17038419 ~ 17040830 (+)
G28982 NA other upstream 2284173 16473898 ~ 16474381 (+)
G28899 NA other upstream 2772828 15985219 ~ 15985726 (+)
G29642 NA other downstream 100369 18883179 ~ 18886402 (+)
G29814 LOC107660256 other downstream 507410 19290220 ~ 19342911 (+)
G29835 NA other downstream 948452 19731262 ~ 19786128 (+)
LOC122343071 NA other downstream 962924 19745734 ~ 19750074 (+)
LOC122343063 NA other downstream 1255123 20037933 ~ 20043453 (+)

Expression


Co-expression Network