CI01000004_08823382_08844233


Basic Information

Item Value
gene id CI01000004_08823382_08844233
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8822749 ~ 8844345 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_08823382_08844233.mRNA
GTATAAATGGTGAGTAAAAGATTTAGGTCTTACATCTTTCGGTCTGTCACAGCATGATGCGCCTTATGCTGTCATTTGTAATTATAATTTTACAAAATTTTAATGAAATGTTAGACTCAATATAAGAAACACAGCATGTGTGTTACATGCTGATTTCCCCATGAAAAATAGACATTTGCTGCCCCCTTGTGAATGAGACCTTTTACCTTTGGTCTGTTGAGTGTTTTCTCTATATTCGTATTGTCAAAGGTGATTTATGCCACATATAAGCCTAATATCAACCAGAACTTTGCTTTTGATTCATATTTCAAATATTTAAAGGTATAGTCCACCCAAAAATGTCAATTCTGTCATCATTTACTCACCCTCTTCATGTCTTTTCAAACCTGTATGCATTTCTTTCTTCTTGTGAACACAAAAGAATATTTTTTGATGAATGTTGATAACAAAAGAGTTAAATTAACCAAAATTTACTTCCATTTGTAATTCATGTCCATATAATGGAAGTCAATCTCTGTATCTCTGCGGCACATACAGCCTCCAACAGTTCCCTGAGGTAAACCTGAGGTACAACACAAACACACACGTCTCAAGGCTCCTGAACAGTCATTACATGTTGAATCTGTCTGAGACATGAGCTCTCTGAAAGCGAGAAAAGCGAACACATCGACAGTCGTACATCTACAGAGAGCACACTTCAAAAACTATTATGAAATGAAAAGGTTTGTGAATGAGCGAGAAATTCTGTGCAGAGATCACAGGAGATCGATGTTTTTTATCAACAAAGAAATACAAGAGCTTCAAAAGACGTTGATGGACATAAACCTGATAAGCGGATATTGTCACGAAGCCTATGCTGCTCATCTGAGATCAGTGAGTATTGCCTTTTCAACTTGTAAAGAAACCAAGAAAGAAAACACATGTGGTAATATTGACTTTAATGTTGAAAGCGGTGACTCAGCGAAATCCAAACGCATGTTTAGCCAGAAGCATAATGGTTTGGGTGATGAAACCTCTGGTGATTGTGAGAGGGATCTGTCAGAAGTCAAACAGCATTCACTGACTCTACAAACGTATAAAAAAGGCAGCACTAATAATTACATTTCACCACATAGGGATTACTTAAAAGCCTCATTGTCTCATTTTGAGTTATCCTCAAGGGAATGCAATGAAAAAGATGAGGATAAAAGCGATGGATATCCTCAGAAGGCTTTGCCCAAGAGCCCTTCATATATCGCAAAGACAGATCTGAAGAGCAGTTCCTCGACTCCTAGACATTTCACCCTTCACAGAGGAGCAAAACAAGTGCATCAAAGACGACAAAAAGTCACCCTTCATAAGAGTCCTGCTCCAGGAATAAGGAGCCCTTCGCATGACCAGGATTGTTGTTATTATATGGGTATACAGCAGCAAGACCAAGACAGCAAGACATTGTCAAGATACTTACAAAGTAAAGACGGCATGGACAAAATCAGGGGTCACATATCAAAAGCGGCCATTAAGCACAGCCTCGATCTGCTCATAAAAGAATACAGTCGTTCTCAAAATGCTGATATAGTGAACAACAGCAAGCAGAGCGGTTTGCAGGAAAAGTATCCTGAATCACTGCTGTCATTCACTTTAGATGTGAGCAGAAGCGGCATCAGTATGAGGAGCCCTTCCTTCATTTTCTGGGTTTTATTACTCGTGGACGTTTCTCCATCTGGTTATGTCAAAACCAATGAAGAAGAAAACATGCCGCAGATAGAGAAATATTCTGACATGAATGTGTTTGTTGCTGTGGGAGATGGAGTAAAGACGCTGATAGTGATGGAGGGAGATTCTGTCACTTTAAACACTAGTGTTACTGAAATAAAAACATATGATACGATATCGTGGATGTTTGGAAAAGAGTGTATCGTTGAAATGAATGAAGCAGCTGGAAGATTCTTTATATCTAAGGGTGAGAGATTCAGAGATAGACTGGCGCTGGACAATCAAACTGGATCTCTCACTATCAAAAACATCAGAACTGAACACACTGGAGATTATCAGCTACATATCCGTAGCAAAAGTGAAACAACAAAGAGATTCAGTGTTACTGTCCGTGTAAAATTATTCAGTAAATGTAAATTTACAAACCTCAGAACCATCGATGGTCTCGAGCAAGTTAATGGATTAAATGGCATTATAGATGCAAAATGGAAAAATGTGATCAAACTGAATGATCATACTGGAGATCTCACCATTAGAAACATCCAAATCCAACACTCTGGAGACTATGATTTGGAGATCAACAACAGCACCACCATCTTACACAGGAAGTTCAATATTGCGGTTAGTGACCTCCCTGAGAATTCACATTGGAACACAACTGGTCCAGTGTTAGCAGCCGTGATCGTGATCGTAATTGTGATCGCGTTCATAATCTGTCTTATGGTCAAGACGGGTAAGATTGAAGTATCCTGGTGCCACAAGAATGATGGTGGTACAGACTCATCGAATGATGCAATGCAGGAATTGAACAGAGATGCTCAACAGCAGTAGTTCATAGTTGGTACACATTAATAGCGTTTGAAAATCAACCATTCTAAAATGAGTTAAGGCTTTTATTTGATTTGGCATGAATAGCATTAGTAGAGAAACATGCTTTCATCTA

Function

NR:

description
LOC100005456 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_08823382_08844233.mRNA True 2638 mRNA 0.39 7 8822749 8844345

Neighbor

gene id symbol gene type direction distance location
CI01000004_08806791_08812203 NA coding upstream 10187 8806791 ~ 8812562 (+)
CI01000004_08746864_08765484 NA coding upstream 56844 8746484 ~ 8765905 (+)
CI01000004_08736175_08742487 PTBP1B, PTBP1, PTBP1A coding upstream 78362 8736175 ~ 8744387 (+)
CI01000004_08730011_08731219 PALM1B coding upstream 90240 8730011 ~ 8732509 (+)
CI01000004_08693419_08703448 PLPPR3A coding upstream 118593 8693419 ~ 8704156 (+)
CI01000004_08866163_08873681 HECTD3 coding downstream 21689 8866034 ~ 8873796 (+)
CI01000004_08875722_08877149 GM11353, RPS8A, RPS8 coding downstream 31377 8875722 ~ 8877507 (+)
CI01000004_08947119_08949558 NA coding downstream 102774 8947119 ~ 8949644 (+)
CI01000004_08976512_08980033 TTPA coding downstream 131909 8976254 ~ 8980984 (+)
CI01000004_08987501_08991239 NA coding downstream 142813 8987158 ~ 8991469 (+)
G28909 NA non-coding upstream 139744 8682707 ~ 8683005 (+)
G28905 NA non-coding upstream 148548 8673758 ~ 8674201 (+)
G28904 NA non-coding upstream 149286 8673221 ~ 8673463 (+)
G28872 NA non-coding upstream 206214 8616221 ~ 8616535 (+)
G28867 NA non-coding upstream 216164 8606314 ~ 8606585 (+)
G28933 NA non-coding downstream 16890 8861235 ~ 8861910 (+)
G28947 NA non-coding downstream 38051 8882396 ~ 8882600 (+)
G28955 NA non-coding downstream 51117 8895462 ~ 8896242 (+)
G28959 NA non-coding downstream 61827 8906172 ~ 8906381 (+)
G28968 NA non-coding downstream 78138 8922483 ~ 8922685 (+)
G28859 NA other upstream 223146 8599235 ~ 8599603 (+)
CI01000004_08414451_08436256 NA other upstream 371522 8414316 ~ 8439933 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 1166366 7654234 ~ 7656383 (+)
CI01000004_06571261_06572539 SEP15 other upstream 2248328 6570771 ~ 6572667 (+)
G28302 NA other upstream 2320662 6470028 ~ 6502087 (+)
G30797 NA other downstream 1653031 10497376 ~ 10497788 (+)
G31710 NA other downstream 2792906 11637251 ~ 11642400 (+)
CI01000004_11666900_11667179 NA other downstream 2820428 11666900 ~ 11667659 (+)
G31865 NA other downstream 3347785 12192130 ~ 12197418 (+)

Expression


Co-expression Network