LOC122342262


Basic Information

Item Value
gene id LOC122342262
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20043755 ~ 20045999 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236062.1
gaaaatgacttttattttggtcgGACGATGTGACGTCATAAGGTCGCGCCGCTCTCCCGCGTCCGTGAATCAgctgaagaaaatgttttatttattttttttgtttcgaaCTCTATGCGATCGATAGAGCTCGTTTAAGCTCGCCGTTCTCTATATAGTCATTCAGCTACTACAGAATGAAACTCCGATACTTTGTCTAGTGATGTTAGCAAAGGTTTATGAGTGAAAGcggaaaaaacataaaagGGCTAAGTGTTACACGCTGTTATAAAGATGGCGTttgttaaagaggagagtgaagaaGCGAAGATTGAGGAAACCTTCAGAGTCAAACTAGAAGAAActgaggaacaaagaaagacCGTGTTTATTAAAGAACAGAGTGAAGAAACGTTCAGAATCAAAGAAGAAGATACCGAGGTACGGTTCATTAAAGAGGAGGCAGAGAGCGTGAAGACTGAAGAAACGTTCAGCGTCAAACGAGAAGAtactgaggaacaaacagACCTGGCGCTGCTGAAAAACGATATTCACGAACTGAGTGATACGAAAGATGAAGTTAACCATAACGACTTCCTAACCGGAGAGAATTTTAGTTGCTCGCAGACCGAAAAAACTCATAAGACCGACGCTACGAGTCATTTCgtctgccaacagtgtggaaataGTTTCGCTAAGAAAGAAAACCTTGAAGTCCACGTgagaattcacaccggagagaagcctttcagCTGCCAACGATGCGGGAAAGCtttcgcaaaaaaaaaagactttcagAGGCACGTGAAAACTCACACTAGAAAAAAGCCTCACGGGTGCAAACTGTGCGGAAACAGTTTTGTTGGCAGAGCGGACCTCGAAAtccacatgagaattcacaccggagagaagccgtacaCCTGCCCGCAATGTGAAAGGAGTTTCACGCGGAAACAAACTCTCAACGCCCACATAAGAACTCACACAGGAGAGAAACCTTActcctgccaacagtgtgggaAAAGTTTCTCCGTCAAAGGAAACCTTGAGGTCCACAAGagaatccacaccggagagaagcctttcaccTGCCCGCAGTGTGGGaaaagtttcattaaaaagacAGACTTCGAAAGGCACAGAAGAGTtcacacgggagagaagccttatgcctgccaacagtgtggaaagagcttttCTAATCCTGGAACCCTCAAAGGCCACCTGAAAATTCACACTAGAGAGAAACCTTtgacctgccaacagtgtggaaagaagTTCAAAAGCGAAGTGACTCTTAATAGCCACACGAAGATCCACTCGATAGTTGGATTTTATGTCCTCAGAGCAGAGGGAGTTTCACAGACCGAAAACGCCTTAAATGTGGCTTACAAGCCTTTATCGCACTACCGCGTCAAAAGAGGACGTTTCAAAGACTAG

Function

GO:

id name namespace
GO:0005669 transcription factor TFIID complex cellular_component

KEGG:

id description
ko03022 Basal transcription factors

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236062.1 True 1419 mRNA 0.44 3 20043755 20045999

Neighbor

gene id symbol gene type direction distance location
LOC122342253 NA coding upstream 337428 19703899 ~ 19706327 (+)
LOC122342246 NA coding upstream 593922 19445561 ~ 19449833 (+)
LOC122342242 NA coding upstream 775705 19265355 ~ 19268050 (+)
LOC122342239 NA coding upstream 893120 19147001 ~ 19150635 (+)
LOC122342238 NA coding upstream 975872 19064025 ~ 19067883 (+)
trnam-cau_2 NA coding downstream 16655 20062654 ~ 20062727 (+)
trnam-cau_3 NA coding downstream 18563 20064562 ~ 20064635 (+)
trnam-cau_4 NA coding downstream 20469 20066468 ~ 20066543 (+)
trnam-cau_5 NA coding downstream 22374 20068373 ~ 20068448 (+)
trnam-cau_6 NA coding downstream 24274 20070273 ~ 20070348 (+)
G29854 NA non-coding upstream 60861 19981924 ~ 19982894 (+)
G29852 NA non-coding upstream 63032 19980489 ~ 19980723 (+)
G29850 NA non-coding upstream 65129 19978320 ~ 19978626 (+)
G29844 NA non-coding upstream 172840 19870420 ~ 19870915 (+)
G29831 NA non-coding upstream 351147 19686857 ~ 19692608 (+)
LOC122343176 NA non-coding downstream 141985 20187984 ~ 20189971 (+)
G29883 LOC107723241,LOC107659605,LOC107550566 non-coding downstream 220837 20266836 ~ 20270112 (+)
G29918 NA non-coding downstream 277681 20323680 ~ 20442006 (+)
LOC122343173 NA non-coding downstream 391666 20437665 ~ 20438508 (+)
LOC122343162 LOC107575631,LOC107741456,LOC107667978,LOC107575420,LOC107741609,LOC107727338,LOC107575457,LOC107566978 non-coding downstream 394549 20440548 ~ 20443225 (+)
LOC122343063 NA other upstream 302 20037933 ~ 20043453 (+)
G29835 NA other upstream 257627 19731262 ~ 19786128 (+)
LOC122343071 NA other upstream 293681 19745734 ~ 19750074 (+)
G29814 LOC107660256 other upstream 700844 19290220 ~ 19342911 (+)
G29642 NA other upstream 1157353 18883179 ~ 18886402 (+)
LOC122342270 NA other downstream 298347 20344346 ~ 20346724 (+)
G29921 NA other downstream 321676 20367675 ~ 20368816 (+)
G29961 NA other downstream 650673 20696672 ~ 20706846 (+)
G30058 NA other downstream 1072563 21118562 ~ 21142831 (+)
LOC122342286 LOC107578117 other downstream 1123194 21169193 ~ 21174340 (+)

Expression


Co-expression Network