LOC122342277 (LOC107741474)


Basic Information

Item Value
gene id LOC122342277
gene name LOC107741474
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20633884 ~ 20638611 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236075.1
ATGTTTCATATTTACTGCATCATCCACCTTGGCCGCTTGGTGTCCCAGTACCTGAAAGGCTCTCGAGACGTCTATGTTCTGAAATCTTCTGTCCAGGAGGCCATCCAGATGAGGATCAACTGGTCTCCACCTCTCCTGTTCCTCTCCTCCTCACGAATGATACTTAAGACACATGCATCTCTTATTGCAGGCACGGGGCTACTCgatgatgccccaggtggaagagacGCTTGGCGGGCTCTCTCCCTGAACTTCATCGTCCCTAAAAAAACGACCCTCCCCACCAAGCCGCGCCGTATGACATCTTCGCTGGTGGGGAAAGCTtttcaggcagcgggtcaggctggtgcttccctgcacaccatggcAGTCCTGCAGGCGTACCAGGCTGAcctgctgaaggacttgagcacaggcggGTCCATCGACGAAGAGGCGTTTTTAGAGCTGCGCcgagccacagatctgtctctccgtGCGACCAAGCAGACGGCCCATGCCATCGGCCGTtctatggctgctatgAGTCGGGACCGTCGGGCCACCCGGTCCCGACCAGGTCCGGTTCCTTTGAGGCGTGACGCACAGAAGGACAGTGTGGCGAGCCGAGCACCCCCTCGTAGAGACTGGGGTGCGGCTCGCCGCGCTTCACAAACCGTGGGGGTGCCTCCCCCCGGGGAGGGGCGCGAAAAATTCCAACAGAAAATAAAGGCTCCTTCCCGGCACcctcaggaagccattgttcaatctccgcCGCCACTGGTGTTTCGGGGAGCAACGGTTTCCAACGAAACGTTGGATGTTCGGTCGCCTCCTGCCACGTTTCAGGACGCCGAACATCTAACAAACCCCCAACAAaacgaagtgtcaaaattagtgcccctttcagagaagctggcagcgtggaagcttctgccaaatatctccccatgggtccaaaagaccatagaaagaggctacaggattcagttcgcatattgtcctccgcgtttcaacggcgtgattttcacttccgtgaAACCAGAACgagcgcatttgttgatacaggagttgcaaactctgctggacaaaggggccatagaacgtgttcctctaccagacagacagtcaggctattacagccgatattttctcgttcccaagaaagatggggggctgcgtccgattttagatcttcgaggattgaaccatcacctcagaacatacaagttcaagatgttaacaataaaaatgattgtctctcaaatccaaccgggcgattggtttgtgacaatcgatctaaaggacgcatattttcacatagaaatattgccacaacacaggaagttcctgaggttcgctttGGCGAaagcttaccagtatcgggttcttcctttcggcctagcattgtcaccccgcacatacacaaaatgcatggatgcagctttggctcctttacgactccagggcatccgcattctaaattacatagacgactggctgattctggctcagtctctaggtctcatggcagctgcttccacagtgatacctttgggcctcctgcacatgagatTGTTTCAGTTATGggctcagagccaggggatttcatccaagggccaatccccagaggcaaataagggttacgcTGCGTCGAGGGCTTCGTACTtatctatgtggttcagaccccggtttctgaccttgggtcccactctaggttcgtgttgtcgtcgcaagatgctaacgacagacgcatccctcacgggttggggagcggtcttagatggccgtccagcccaagggatctggagaggtcatcttctcgaatggcacatcaattgcctcgaaatgaaggctgtatttctggccctgaaatacttcctccagcagttgagaggctaccatgtcctagtgtGGGTGGACAACATggcagtagtctcttacataaatcgcctgcggtcgcgccgcttgaacgagctagcgcagcaggttctgctttgggcgcaggacaagttcctgtccctcagggcgatttatattcccggtcacatgaacaggggagcagacttcctgtccagacaagctgtgacacatggggaatgaaaactccaccccgaagtagtcagtcaaatctgggaaaggttttacgaagcagaggtggacctctttgcttcacaggagacagcacaatgtcccctctacttctctctgactcatccagctcccctgggtctggacgcgatggcccatgtgtggcccagaatgcgtctttacgcatttcctccgattgctctgctccccggagtcctagccaaggcccgtcaacaggggtctcgcctcttattcatagcgccccgttggccaaccagaatatggttctcagatctaatatctctcctcgACGGCTCACCGTGGGCGATTCcggtgaggagggaccttctctctcaggcacaggggacaatatttcatccccgt

Function

NR:

description
PREDICTED: ubiquitin thioesterase OTUB1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236075.1 True 2454 mRNA 0.54 7 20633884 20638611

Neighbor

gene id symbol gene type direction distance location
LOC122343005 NA coding upstream 74870 20543132 ~ 20559014 (+)
LOC122342276 NA coding upstream 118255 20505411 ~ 20515629 (+)
LOC122343122 NA coding upstream 157176 20470670 ~ 20476708 (+)
LOC122342275 NA coding upstream 164823 20468226 ~ 20469061 (+)
LOC122342274 NA coding upstream 187748 20443346 ~ 20446136 (+)
LOC122343085 LOC107561645,LOC107566978,LOC107748257,LOC107741456 coding downstream 1531 20640142 ~ 20644792 (+)
LOC122342964 NA coding downstream 16604 20655215 ~ 20677909 (+)
LOC122342951 NA coding downstream 151564 20790175 ~ 20800541 (+)
LOC122343111 NA coding downstream 263608 20902219 ~ 20906726 (+)
LOC122343116 NA coding downstream 278939 20917550 ~ 20918689 (+)
G29945 NA non-coding upstream 2555 20630820 ~ 20631329 (+)
G29927 LOC107681551 non-coding upstream 136016 20497097 ~ 20497868 (+)
LOC122343178 NA non-coding upstream 171542 20459370 ~ 20462342 (+)
LOC122343162 LOC107575631,LOC107741456,LOC107667978,LOC107575420,LOC107741609,LOC107727338,LOC107575457,LOC107566978 non-coding upstream 190659 20440548 ~ 20443225 (+)
G29918 NA non-coding upstream 191878 20323680 ~ 20442006 (+)
G29947 LOC107709565,LOC107727338,LOC107575420,LOC107569100 non-coding downstream 6646 20645257 ~ 20645535 (+)
G30005 NA non-coding downstream 146698 20785309 ~ 20785530 (+)
G30003 NA non-coding downstream 241838 20880449 ~ 20882908 (+)
G30024 NA non-coding downstream 271543 20910154 ~ 20975778 (+)
G30025 LOC107561645 non-coding downstream 273947 20912558 ~ 20934912 (+)
G29921 NA other upstream 265068 20367675 ~ 20368816 (+)
LOC122342270 NA other upstream 287160 20344346 ~ 20346724 (+)
LOC122343063 NA other upstream 590431 20037933 ~ 20043453 (+)
G29835 NA other upstream 847756 19731262 ~ 19786128 (+)
G29961 NA other downstream 58061 20696672 ~ 20706846 (+)
G30058 NA other downstream 479951 21118562 ~ 21142831 (+)
LOC122342286 LOC107578117 other downstream 530582 21169193 ~ 21174340 (+)
LOC122342301 LOC107563870,LOC107718524,LOC107683800,LOC107564010,LOC107563545 other downstream 730032 21368643 ~ 21761181 (+)
G30119 NA other downstream 749582 21388193 ~ 21630120 (+)

Expression


Co-expression Network