LOC122342280


Basic Information

Item Value
gene id LOC122342280
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20921435 ~ 20929163 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236078.1
TTTTCTTCAGAGGAAATGGATATGAGTCATCAACATGCAGTGACGTCAACAAACcaaaaaacgaaagaaaaaagCTGGTCCGTTGGAACTGAATTCTTTATGGAGACGCACAAGAGCACCGCCTCTAAAAAGAGTCACagtgaagaggaagaagaggtgAATGCAGAAGTTGCAGAATCTACAGGACCCTGCTGTGTTCCGATGAAGAGCAATGAATACATGCCACAGTCACCCCCTAAGTTCAGTGATGGAACAGCGACATTTAACCCCAGagtaaaaagaaaaagagcagcacAACCAGAACCCAGCTGCTTTTCTATAAAGAGTGACACATCCATGCCAGAACCCTTAGTTTTGGAGATGGAGCAAATGGCATCTAAAATATCAGTGATAAAAATCCATTCAGCACAACCAGAACCCAGCTGCTTTTCTATAAAGAGTAACACATCCATGCCAGAACCCCTTAGTTTTGGAGATGGAGCAGTGACCTTTAAGCTCAGAGATGATGAGATTGGAGACCTGCACAAGGATTCTCAACAACCAATACATGATGAATTACAAAGGGTCAAAGGCCAAAACAAAACCAGTATGAAGAACAAGTATGAGAGCTTATTTGAGGGAATAAAACTTCAAGAGAATCAAACCCTTCTGAACAGAATCTACACACAACTTTACATTATAGAGGGAGAGAGCAAAGGAGTGAATGAGGAACATGAGGTTTTACAGATAGAGAAAGCAGCCAAAATACAAGACACTCCAATCTActgcaatgacatttttaaacacttatCTGAACCAGGatgtaaaaagaatgaaaataatataaagactgttcttactaaaggaatcgctggaattggaaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagccaatcaggatgtagacttcatgtttgtgcttccatttcgagagctgaacttgattaaagatcatcagtacagtcttcacagacttctgctTGACTTTTATCCTGAACTTGAAGATCTGGACTCAAATATTTATGAGGAGTGtaaagttgtgttcatctttgatggtttggatgaaagcagaatttcactgatgttttcagatgtTCAGAAAGTTTGTGATGTGACTCAGACTTCATCACTGGGTTTGTTGATATCAAACCTGATGAAAGGAGATCTGCTttcctctgctctcatctggatcacctccagaccagcggcagccaatcagatccccaCCAAATACATCAGCCGTCTTACAGAAATTCAGGGATTCAATGACCttcagaaggaggaatattttAGGAAGAGAATCAGTGATGAGCATCAAGCAaacagaatcatctcacacatcagAAGGGCAAGAAGCCTCCACATTATGTGTCACATCcctgtcttctgctggatctcatccaCTGTGCTTCAGAAGCTCCTGGATGAAGGTCTGAGTGAGGAAATccctcaaactctgactgaaatgtacattcacttcctgCTGATTCAGGTCAATAGGAGGAATCAGAAATATGAAGAGAAAGATCCAGAGAAAGTCTTGCAGTCCAACAGAGAAGTGATTGTGAAACTTGCTGAACTTGCTTTTAAACAGCTGGCAAAGGGAAATGTTACATTCTACAAAGAGGACATGAGTGAGAGCAACATAGACATCACTGATGCAtcagtgtattctgggatttgTACTGAGATCTTTAAGGAGGAATCTGTCATTCATCAAAAGAAAGTCTACTGTTTCATACATTTGAGTTTTCAGGAGTTTCTAGCTGCTTTCTATGTGCTTTACTGTCATCTTCTAGAGAAAATGGAGCAATTGcagttgttttttataaatatacaaacatttaaggAAATCCCTTTGTGTCAGCTGCTAATATCAGCAGTTGATCAAACTCTTCAGAGAAACGGACACCTAGATCTTTTTTTGCGATTCCTGCTGGGTGCCTCACTGGAGTCTaatcagagactcttacagGATCTACTGCCACACACAGTGAAAAGCTCAAAGGCAATCAGAGAAACTACACAGTAtattaaagagaaaatcaaAAGAGACGATTTTCAGAATGATATCTCAGCTGACAGATCCATCAATCTATTCCTCTGTCTTCTGGAAATAAATGATGAGACTCTGTACAGAGAGATTCAGGACTTTGTGAAATCAGACAAAAACTCAGAGAAGAAACTTTCTCCTGCTCACTGCTCAACAATAGCCTACATGATTCAGATGTCAGAGAAGGTGCTAGATGACTTTGATCTGAAGAAATACAACACATCGACTGTGGGTAGATGGAGACTGATACCTGCTATGATGAACTGCAAAAAAGCTCTGTAA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0042613 MHC class II protein complex cellular_component

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236078.1 True 2355 mRNA 0.40 7 20921435 20929163

Neighbor

gene id symbol gene type direction distance location
LOC122343116 NA coding upstream 2746 20917550 ~ 20918689 (+)
LOC122343111 NA coding upstream 14709 20902219 ~ 20906726 (+)
LOC122342951 NA coding upstream 120894 20790175 ~ 20800541 (+)
LOC122342964 NA coding upstream 243526 20655215 ~ 20677909 (+)
LOC122343085 LOC107561645,LOC107566978,LOC107748257,LOC107741456 coding upstream 276643 20640142 ~ 20644792 (+)
LOC122342283 NA coding downstream 88989 21018152 ~ 21020872 (+)
LOC122343014 NA coding downstream 110617 21039780 ~ 21044018 (+)
LOC122342958 LOC107566977,LOC107677745 coding downstream 126329 21055492 ~ 21066850 (+)
LOC122342972 NA coding downstream 164290 21093453 ~ 21112328 (+)
LOC122343080 NA coding downstream 226910 21156073 ~ 21161025 (+)
G30003 NA non-coding upstream 38527 20880449 ~ 20882908 (+)
G30005 NA non-coding upstream 135905 20785309 ~ 20785530 (+)
G29947 LOC107709565,LOC107727338,LOC107575420,LOC107569100 non-coding upstream 275900 20645257 ~ 20645535 (+)
G29945 NA non-coding upstream 290106 20630820 ~ 20631329 (+)
G29927 LOC107681551 non-coding upstream 423567 20497097 ~ 20497868 (+)
LOC122343171 NA non-coding downstream 42347 20971510 ~ 20972249 (+)
G30056 NA non-coding downstream 188498 21117661 ~ 21118522 (+)
LOC122343166 NA non-coding downstream 196922 21126085 ~ 21126420 (+)
LOC122343205 NA non-coding downstream 201991 21131154 ~ 21133602 (+)
LOC122343163 NA non-coding downstream 234593 21163756 ~ 21167242 (+)
G29961 NA other upstream 214589 20696672 ~ 20706846 (+)
G29921 NA other upstream 552619 20367675 ~ 20368816 (+)
LOC122342270 NA other upstream 574711 20344346 ~ 20346724 (+)
LOC122343063 NA other upstream 877982 20037933 ~ 20043453 (+)
LOC122343071 NA other upstream 1171361 19745734 ~ 19750074 (+)
G30058 NA other downstream 189399 21118562 ~ 21142831 (+)
LOC122342286 LOC107578117 other downstream 240030 21169193 ~ 21174340 (+)
LOC122342301 LOC107563870,LOC107718524,LOC107683800,LOC107564010,LOC107563545 other downstream 439480 21368643 ~ 21761181 (+)
G30119 NA other downstream 459030 21388193 ~ 21630120 (+)
G30115 NA other downstream 710377 21639540 ~ 21641756 (+)

Expression


Co-expression Network