LOC122342287 (LOC107722090,LOC107694763,LOC107585758,LOC107668179,LOC107574018,LOC107573797,LOC107697810,LOC107566573)


Basic Information

Item Value
gene id LOC122342287
gene name LOC107722090,LOC107694763,LOC107585758,LOC107668179,LOC107574018,LOC107573797,LOC107697810,LOC107566573
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21177555 ~ 21182761 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236084.1
CTAGAGCCCAGCagtgtgtctgtgaggattGACGTGTCTATAAAACAGCCATTGGATTTTAAGAGAGAAGATACAAAGACTGTTCTCAGTCCTCAACATGCTTAGAGCAAATCTGTTGAAGAAGTTTGAGCATCTGTGTGAGGGAACAGCGACGCAGGGAAAGCCAACACTCCTGAATgagatctacacagagctctacatcacagagagtgagagaggagagatcaGTAATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGAGCAGCAACAGAAGACACAGCCATCAAATGCAGTGACATCTTCAGATCTTTACCTGGACAAGACAAGGACGTCAGAACTGTGCTGACAAAGGGAGttgctggcattggaaaaacagtctctgtgcagaatTTCATTCTAGACTGGGCCAAAGGGAAAGAGAATCAGGACATCCACATcatatttccacttcctttcagagACATCAACTTGATGAAGGACAAAACACTCTCAGATCACTTTCAGATCTTCTTCACGTCTTCTTCCCTGAaactaaagaaatggaaatatccaggagtcgctggcattggaaaaacagtctctgtgcagaagttcatcctggactgggccgaagagaaagagaatcaggatgtccagctcatatttccacttcctttcaAAGAAATCAACTTTATGAAGAGCAGAACACTCAGTCTTTCAGATCTTCTTCACATCTTTTTccctgaaataaaagaaatgaaaatatccAGTGATGAATACaaagtgttgttcatctttgatggtctggacgaGTGTCGTCTGTCTCTGGACTTTAAGAGTAAAGTGAAACTGTGTAATATATCTGAGTCAGCCTCAGTGgatgtgctgctgatgaacctgattgtggggaatctgcttccctctgctctcatctggatcacctccagaccagcagcagctgatctTGTCCCCTCTGAGTGCGTTCATCGAGTGACAGAGATACGAGGCTTCAATGAGCCACAGAAGGAGGAATACTTCAGGAAGAGGATCAGTGATCAGAGACTGTGCACTCAAATCTTTAGAGAGGAGCTGGGTTTGTTTAGGGGGAAGGTCTTCTGCTTCGTTCATCTGTCCCTTCAGGAACATCTAGCAGCTCTATATGTGTACCTCTCATTTACAATCAAGAATAGAAATGTGTTTGACCAAACCAAACAGAGTCTGTTGTCTAAGATGTTTCACCAGAAGAAATCTAATTCACTATCTGAGCTGCATCAGATAGCTGTAAACGAGGCTCTACAAAAGTCAGTGTTGGAGATCAAACTGTTCAGATTCATCATGAATGAAACAGAAACATCTGGAGATGAAGAGTATTCTCCAACCTGCAGttcagttcatcagaagagatcagaagtAGAGTCCAGCTGTTTGTCTATGAAGAGTGACAGGTCTATGGATCCGCCAGTGAACTTTAAGAGttcagttcatCAGAACAGTTCAGAAGCAgagtccagctgtgtgtctatgaagagaGAGACATCTGTGATTCAGTCTTTAGATATTAAGAGAGGAGATACGCGGCCTGTTCTCAGtcatgAAGTCCTCAACACATTTAGATCAAATCTGCTGAAGAAgtttgagtgtctgtgtgagggaACAGCGACACAGAGAAACCCAACACTGCTGAATgagatctacacagagctctacatcacagagagtgagagaggagagatcaaTAATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGAGAAGCAAGAGAGGACACAGCTATCAAATGCAGTGATATCTTCAGACCTTTACCTGGACAAGACAAAGACATCAGAACTGTGCTGACAAAGGGAGttgctggcattggaaaaacagtctctCCATGA

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 1b allele 3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236084.1 True 1894 mRNA 0.44 9 21177555 21182761

Neighbor

gene id symbol gene type direction distance location
LOC122342285 LOC107725790,LOC107656690 coding upstream 9594 21167249 ~ 21167961 (+)
LOC122343080 NA coding upstream 16530 21156073 ~ 21161025 (+)
LOC122342972 NA coding upstream 65227 21093453 ~ 21112328 (+)
LOC122342958 LOC107566977,LOC107677745 coding upstream 110705 21055492 ~ 21066850 (+)
LOC122343014 NA coding upstream 133537 21039780 ~ 21044018 (+)
LOC122342966 LOC107563536 coding downstream 39809 21222570 ~ 21230104 (+)
LOC122342289 LOC107685875,LOC107749047,LOC107728228 coding downstream 109551 21292312 ~ 21305636 (+)
LOC122343117 NA coding downstream 194777 21377538 ~ 21379639 (+)
LOC122342293 NA coding downstream 216056 21398817 ~ 21400148 (+)
LOC122342295 LOC107573707,LOC107575631,LOC107689603,LOC107741456,LOC107667978 coding downstream 264479 21447240 ~ 21449510 (+)
LOC122343163 NA non-coding upstream 10313 21163756 ~ 21167242 (+)
LOC122343205 NA non-coding upstream 43953 21131154 ~ 21133602 (+)
LOC122343166 NA non-coding upstream 51135 21126085 ~ 21126420 (+)
G30056 NA non-coding upstream 59033 21117661 ~ 21118522 (+)
LOC122343171 NA non-coding upstream 205306 20971510 ~ 20972249 (+)
G30077 NA non-coding downstream 65426 21248187 ~ 21248425 (+)
G30090 LOC107749046 non-coding downstream 93349 21276110 ~ 21301007 (+)
G30085 NA non-coding downstream 128794 21311555 ~ 21337024 (+)
G30104 NA non-coding downstream 150484 21333245 ~ 21721910 (+)
G30110 LOC107718524,LOC107563870 non-coding downstream 186661 21369422 ~ 21374537 (+)
LOC122342286 LOC107578117 other upstream 3215 21169193 ~ 21174340 (+)
G30058 NA other upstream 34724 21118562 ~ 21142831 (+)
G29961 NA other upstream 470709 20696672 ~ 20706846 (+)
G29921 NA other upstream 808739 20367675 ~ 20368816 (+)
LOC122342270 NA other upstream 830831 20344346 ~ 20346724 (+)
LOC122342301 LOC107563870,LOC107718524,LOC107683800,LOC107564010,LOC107563545 other downstream 185882 21368643 ~ 21761181 (+)
G30119 NA other downstream 205432 21388193 ~ 21630120 (+)
G30115 NA other downstream 456779 21639540 ~ 21641756 (+)
G30218 LOC106676322,LOC106676931,LOC106676323,LOC107752219,LOC106675762,LOC106674878,LOC106676183 other downstream 1048709 22231470 ~ 22231924 (+)
LOC122342310 LOC107685875,LOC107671223,LOC107749047,LOC107728228,LOC107576424 other downstream 1114136 22296897 ~ 22305148 (+)

Expression


Co-expression Network