LOC122342289 (LOC107685875,LOC107749047,LOC107728228)


Basic Information

Item Value
gene id LOC122342289
gene name LOC107685875,LOC107749047,LOC107728228
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21292312 ~ 21305636 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236086.1
CAAGCTGCCAGGGAGACATTTCTGTAGATtgtaacattcatttttatacttgattataagatttttttctcaattttgaaaaactaatcattctttttatttgcttatgtgggaagataaacaaaaataatgggAAGGCTTGGGAACTTGTTTAGTAAAAGAACGGGAAGTCTTCAGCTGTGGAGCTGAAAGGCATTTCCTTATTCATAGTCAGTGTTGGAGATCAAACTGTTCAGATCCatcatgaatgaaacacaaacatctggAGATGAAGAGTATTTTCCAGACTGCAGGTcagttcatcagaagagatcagaagtAGAGCTCAGCTGTGTGTCTATAAAGAGCGACTGCTCTATGGATCCGCCAATGAAGTTTAAGAGTGAAGATATACAGCCTGGACTCAGTTCAattcatcagaagagatcagaagcagagtccagctgtgtgtctaCGAAGAGAGAGACATCAGTGATTCAGTCTTTAGAATTTAAGAGAAGAGTCCTCAACACACTTAGATCAAATCTGCTGAAGAAgtttgagtgtctgtgtgagggaACAGCAACACAGAGAAACCCAACACTGCTGAATgagatctacacagagctctacatcacagagagtgagagaggagagatcaaTAATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGAGAAGCAACAGAGGACACAGCCATCAAATGCAGTGACATCTTCAGACCTTTACCTGGACAAGACAAAGACATCAGAACTGTGCTGACAAAGggagtcgctggcattggaaaaacagtctctgtgcagaagttcatcctggactgggccgaagagaaagagaatcaggatgtccagctcatatttccacttcctttcaAAGAAATCAACTTTATGAAGAGCAGAACACTCAGTCTTTCAGATCTTCTTCACATCTTTTTccctgaaataaaagaaatgaaaatatccAGTGATGAATACaaagtgttgttcatctttgatggtctggacgaGTGTCGTCTGTCTCTGGACTTTAAGAGTAAAGTGAAACTGTGTAATATATCTGAGTCAGCCTCAGTGgatgtgctgctgatgaacctgattgtggggaatctgcttccctctgctctcatctggatcacctccagaccagcagcagctgatctTGTCCCCTCTGAGTGCGTTCATCGAGTGACAGAGATACGAGGCTTCAATGAGCCACAGAAGGAGGAATACTTCAGGAAGAGGATCAGTGATCAGAGTCTGGCCGACAGGATCATCTCACACCTGAAGTCTTCCAGGAGCCTCttcatcatgtgtcacatcccagtcttctgctggatctcagccactGTTCTTGAGAAGATCTTGAGTCAAGCAGAGACTGGAGAAATTCCCAATActctcactcaaatgtacacacacttcctgatccttcagaccaacatcaaacatgagaaGGACTATGAGAAGAATGTGACTGATAAAGACATGATCCTCAAACTGGGGAAACTGGCTTTTCAGCAGCTTGTGAAAGGAAACTTGATTTTCTATGATAAAGACCTGAAAGAGTGTGGCATTGATGTGACAGAAGCATCAATTTATTCAGGACTGTGCACTCAAATCTTTAGAGAGGAGCTGGGTTTGTTTAGGGGGAAGGTCTTCTGCTTCGTTCATCTGTCCCTTCAGGAACATCTAGCAGCTCTATATGTGTACCTCTCATTTACAATCAAGAATAGAAATGTGTTTGACCAAACCAAACAGAGTCTGTTGTCTAAGATGTTTCACCAGAAGAAATCTAATTCACTATCTGAGCTGCATCAGATAGCTGTAAACGAGGCTCTACAAAGTAAGAATGGCCATCTGGATCTTTTCTTGAGGTTTCTTCTGGGTCTCTCAGTGGAGTCCAATCAAACTCTCTTAAGAAAACTACTGATCCAGACAGGAAGCTGTCCCtacaacaaagagaaaacagctTATTTCATCAGACAGAAGATCACTGAGAATCACTCTTCAGAgaaatccatcaatctgtttcactgtctgaatgaactgggtgatgattcactgatgcaGGAGATCCAAGGTTATTTGAAATCTGGAGAAATAAGAAAAACCACACTATACACTTCTCAGTGGTCAGCTTTGGTTTATGTGTTGTTGACATCAGAGCAGAAGATGgatgtttttgatttaaaagagTTTATAGGAGAACAACATACAGGAGATGAAGTTCTTCAGTATCTGTTACCTGTGGTTAAAGAATCCAGATCAGTTCGgctatgtggatgcaaactcactgctcagtcttgtggagagaaaggctgtggttatgtgtcttcagctctgacttcaaacccctcacacctgagagagctggatctaagctacaatcatcctggagattcaggagtcaagctgctctctgaaaaactggaggacTCAGCCTGCTCATTGGACAAGCTGAATGTGGATCATGGAGGAGAATTCAGGATTTCACCAGGAATGAAGAAATATGGTTGTTTTCTCACACTGGAtgcaaacacagcacacactcgtCTCggtctgtctgaggagaacagaaaggTGTCACGTGTGGAAGAGTATCagtcgtatcctgatcatccagacagatttgatcaTTGGGagcaggtgttgtgtagagagagtgtgtgtggacgctgttactgggagatcGAGTGGACTGGAGATGTGCGTATTTCAGCAtcatataagaacatcagcaggaagggacgaggtaaagagtgtgtgtttggatctgacgatcagtcctggagtttgtcCTGCTCTTCTGACAGAtactcattcagacacaataaCATAGAGACTGATCTCTCTGTGAAGCCAATCAGCATCAGAGGAACAGATTGGTATGATTTGGCAGGACTGTTTGATGATTATGTTCAATATATCAATAGAGTAGGAGTGTTtgtggatgagagcgcaggaactctgtccttttACAAAGTCTACAGAGGTtcaatgagactcatccacacagtccagaccacattcactcagacccTCTATCCTGGGTTTACTGTTTGGTCTGGATCCGTGAAACTGTGTTgctgaatcagaagagactgatgagATTCTACCCATAATGCTTTGATCTGCATGATGAATCAGTAACATTGAGATGTTATGAGTCTCTTCCAGACATTAATACTGCAGCTCAACTTCTGTCACTGAAATAAGTAAAGAAATGTGTCATAAACACTCAAAtcaattttgttttcatgtctcctcaaacatttactttatttctgttcaaatataaaaatgtcacaaacatgagtgaagaaaatgcaattaatttaggtgttgtttttgagaagaaataataaaacaatgacagATCAACTTGAGATCAGACTTTAATTGATGTTTCATCATTCATCATGAATATAATCGATTCCTGACAATGACATTctaaaaatgtgatattaatcagaatttaataaaatatattttgtaacgACGCTAAACCCATATTGAttgattatatttcaataaatgaaaactgtaagaatatatttgaaaaatattattttttgacagCAGAATATCATCATCATTGATCTTTTGctacaacacaatacaatacTCCTACTTTGTGGATTTCATGTAAGTGTGTTTTCCACcactaattaaagaaaaaataaatgaatagcaaCTTTTACCTCAcaattctgtctttattttctcagaattaaCCCAACTTTCACGAACGTGTATACACCAGATAACAcagataaatgcatttttatcaaagtactgcgttttcaagcaaaatacattcagatatcatgttcttttatttgaaaattattacATGACTAATTCAAATTGCATTCAGTAACcagaacaaacagacacact

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236086.1 True 3906 mRNA 0.40 8 21292312 21305636

Neighbor

gene id symbol gene type direction distance location
LOC122342966 LOC107563536 coding upstream 62208 21222570 ~ 21230104 (+)
LOC122342986 LOC107563545,LOC107667978,LOC107741456 coding upstream 106177 21182237 ~ 21186135 (+)
LOC122342287 LOC107722090,LOC107694763,LOC107585758,LOC107668179,LOC107574018,LOC107573797,LOC107697810,LOC107566573 coding upstream 109551 21177555 ~ 21182761 (+)
LOC122342285 LOC107725790,LOC107656690 coding upstream 124351 21167249 ~ 21167961 (+)
LOC122343080 NA coding upstream 131287 21156073 ~ 21161025 (+)
LOC122343117 NA coding downstream 71902 21377538 ~ 21379639 (+)
LOC122342293 NA coding downstream 93181 21398817 ~ 21400148 (+)
LOC122342295 LOC107573707,LOC107575631,LOC107689603,LOC107741456,LOC107667978 coding downstream 141604 21447240 ~ 21449510 (+)
LOC122343031 LOC107563545,LOC107564010 coding downstream 143881 21449517 ~ 21452862 (+)
LOC122343024 NA coding downstream 338683 21644319 ~ 21650178 (+)
G30077 NA non-coding upstream 43887 21248187 ~ 21248425 (+)
LOC122343163 NA non-coding upstream 125070 21163756 ~ 21167242 (+)
LOC122343205 NA non-coding upstream 158710 21131154 ~ 21133602 (+)
LOC122343166 NA non-coding upstream 165892 21126085 ~ 21126420 (+)
G30056 NA non-coding upstream 173790 21117661 ~ 21118522 (+)
G30085 NA non-coding downstream 5919 21311555 ~ 21337024 (+)
G30104 NA non-coding downstream 27609 21333245 ~ 21721910 (+)
G30110 LOC107718524,LOC107563870 non-coding downstream 63786 21369422 ~ 21374537 (+)
G30132 NA non-coding downstream 173921 21479557 ~ 21522253 (+)
G30133 LOC107749047,LOC107571854,LOC107728228,LOC107669894 non-coding downstream 180076 21485712 ~ 21527011 (+)
LOC122342286 LOC107578117 other upstream 117972 21169193 ~ 21174340 (+)
G30058 NA other upstream 149481 21118562 ~ 21142831 (+)
G29961 NA other upstream 585466 20696672 ~ 20706846 (+)
G29921 NA other upstream 923496 20367675 ~ 20368816 (+)
LOC122342270 NA other upstream 945588 20344346 ~ 20346724 (+)
LOC122342301 LOC107563870,LOC107718524,LOC107683800,LOC107564010,LOC107563545 other downstream 63007 21368643 ~ 21761181 (+)
G30119 NA other downstream 82557 21388193 ~ 21630120 (+)
G30115 NA other downstream 333904 21639540 ~ 21641756 (+)
G30218 LOC106676322,LOC106676931,LOC106676323,LOC107752219,LOC106675762,LOC106674878,LOC106676183 other downstream 925834 22231470 ~ 22231924 (+)
LOC122342310 LOC107685875,LOC107671223,LOC107749047,LOC107728228,LOC107576424 other downstream 991261 22296897 ~ 22305148 (+)

Expression


Co-expression Network