LOC122342290 (LOC107561645,LOC107741456)



Basic Information


Item Value
gene id LOC122342290
gene name LOC107561645,LOC107741456
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21309532 ~ 21313970 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043236087.1
tcaaactttacatttaaacagagaaattattttgaaattagcCAAGCTAGCATTTGAACAGCTGAAGCAAGAAAAAATTGTGTTCTATGAGAAAGATCTGGAAGATTGTGGTATTGATGTGAGTAAAGACACTGAGTTCACAGGAATGATCGCTGATATTTTCAAAAGGGAACATAGACTTCATGGAGCAAAGGTCTTCTGTTTTGTGCATCTGAGTGTTCAAGAGTTTCTTGCTGCAGTCCATGTGTTCTTCTACTACCTGAACAAGAACATGCAAAagcttcagtttttctttgatgaggcaaaacaaaatgtcacattGGAGGAGCTACTGCAGAAGACTGTTAATAAAGCAATGAAGAGTAAAAAAGGACACCTTTTCCTACGGTTTCTGATGGGCATTTCACTGAAATCTTGCCAAAGTCTACTCAAAGGCCTGATCACACACCCTGAAGACACCACAGAGAGCATCAGATAAACAACAGAATACATTAAACTAGTACAAGACAAGAATATCTCAGATGAAGCTTCAGTCAACCTGTTCTACTGCTTACTTGAGCTCAAAGATCATTCATTATATGAGGAAATACCTCAGAGTTACCTCAGTTCAGATGAACATCCAGAAGAGATCTCTCATCTTCAATGTGTACAGTGTTGACCTACATACTACTGATGTCAGAGAAGGTGCTGGATGAGTTCAACCCAAAGAGGTTCACATCTAAACAAGCTGACTACTGGAGACTCATTCCAGCTGTGAGATGTTGCAGAAAAGCCCTATTAGATGGCTATGGTTTTGACAAAACGTGTTGTGAAAATATGTCTTCTGCTCTACAATCATCAAACCATCTGATAGAGCTGAACCTGAGCAGCAatcacctgcaggattcaggagtgaagctgctttctgatggactgaagagtccacaCTGTCGACTGAACATACTGAGattttCCATCTGTAATCTCACTGCTCAATCATGTGAGAGTTTGTcatcagttttacaatcctcaaactcaaacatctTGAGGGAGCTGGACTTGaataacaatgacctgcaggattcaggagggAAGGTtctttctgatggactgaagagtccaaactgtcagcTGGAGATACTGAGgttgtctggctgtatggtgacagagaAAGGCTGTCATTATGTGTCTTTAGCTCTGACTTCAAACTAA

Function


NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043236087.1 True 1191 mRNA 0.40 4 21309532 21313970

Neighbor


gene id symbol gene type direction distance location
LOC122342980 LOC107571898 coding downstream 21210 21282287 ~ 21288322 (-)
LOC122342288 LOC107667978,LOC107563545 coding downstream 33435 21250399 ~ 21276097 (-)
LOC122342959 LOC107575420 coding downstream 61779 21231760 ~ 21247753 (-)
LOC122342284 NA coding downstream 228442 21071372 ~ 21081090 (-)
LOC122342968 NA coding downstream 271133 21030443 ~ 21038399 (-)
LOC122343094 NA coding upstream 4844 21318814 ~ 21322095 (-)
LOC122342292 NA coding upstream 67822 21381792 ~ 21383191 (-)
LOC122343027 LOC107685875,LOC107749047,LOC107671223,LOC107570416,LOC107728228,LOC107655115 coding upstream 170811 21484781 ~ 21487205 (-)
LOC122342296 NA coding upstream 173235 21487205 ~ 21495229 (-)
LOC122342973 LOC107685875,LOC107749047,LOC107728228 coding upstream 203503 21517473 ~ 21528946 (-)
G30343 NA non-coding downstream 183461 21117815 ~ 21126071 (-)
G30301 LOC107707774,LOC107566977,LOC107677745 non-coding downstream 241344 21065914 ~ 21068188 (-)
G30317 LOC107561645,LOC107575420,LOC107747810,LOC107575457,LOC107741456,LOC107667978 non-coding downstream 335467 20972276 ~ 20974065 (-)
G30293 NA non-coding downstream 572372 20736146 ~ 20737160 (-)
G30286 NA non-coding downstream 631668 20676260 ~ 20677864 (-)
G30394 NA non-coding upstream 64612 21378582 ~ 21765825 (-)
G30406 NA non-coding upstream 178294 21492264 ~ 21492907 (-)
G30408 NA non-coding upstream 185668 21499638 ~ 21499998 (-)
LOC122343179 LOC107667978,LOC107563545,LOC107741456 non-coding upstream 354840 21668810 ~ 21673424 (-)
G30425 NA non-coding upstream 359753 21673723 ~ 21676131 (-)
LOC122343113 LOC107749046 other downstream 30489 21276222 ~ 21279043 (-)
LOC122343098 NA other downstream 255807 21048857 ~ 21053725 (-)
LOC122343123 NA other downstream 445126 20858423 ~ 20864406 (-)
G29906 NA other downstream 1027132 20281106 ~ 20282400 (-)
G29902 NA other downstream 1070978 20237137 ~ 20238554 (-)
LOC122343135 NA other upstream 13645 21327615 ~ 21336881 (-)
G30395 NA other upstream 69499 21383469 ~ 21386437 (-)
LOC122343153 NA other upstream 73883 21387853 ~ 21783591 (-)
G30396 NA other upstream 315647 21629617 ~ 21776806 (-)
G30372 NA other upstream 423121 21737091 ~ 21740330 (-)

Expression



Co-expression Network