CI01000004_08857253_08860111 (RABGGTB)


Basic Information

Item Value
gene id CI01000004_08857253_08860111
gene name RABGGTB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8857253 ~ 8860111 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_08857253_08860111.mRNA
GGAACCCAGGTTAAAGACGTGATCATTAAACCTGATGCTCCAAACACTCTGCTCCTGGACAAGCATGCAGACTATATTGCTGCCTATGGCTCCAAGAAGGATGATTATGAGTACACGCTGTCAGAGTACCTAAGAATGAGTGGCATCTACTGGGGCCTGACAGTAATGGACCTGATGGGTCAGCTCTCTCGAATGAACCGTGAGGAGATCATAGACTTCATCAAGTCCTGCCAGCATGACTGTGGAGGCATCAGCGCCAGCATCGGCCACGACCCTCACCTCCTCTACACCCTCAGTGCTGTACAGATCCTGTCCTTGTATGATAGCATTAATGTCATTGATGTGGACAAAGTGGTGGAATATGTTAGAGGACTGCAGCAGGAGGACGGCTCATTCGCCGGGGACAAATGGGGTGAAATAGATACACGGTTTTCCTTTTGTGCGGTTGCGACATTGGCACTACTGGGCAAGTTAGATGCAATCAACATGGACAAGGCCGTTGAGTTTGTGCTGTCCTGTATGAACTTTGATGGTGGGTTTGGTTGTAGGCCTGGTTCAGAGTCTCATGCTGGTCAGATTTACTGCTGCACAGGTTTCTTGTCCGTCACTGGGCAGCTTCATCAAGTAAATGCAGATCTGTTGGGCTGGTGGCTCTGTGAAAGACAGTTGCCATCAGGAGGCCTGAATGGGAGACCAGAGAAGCTGCCTGATGTCTGCTATTCCTGGTGGGTTCTTGCATCTTTGAAGATCATTGGCAGAATTCACTGGATTGACAAAGCAAAACTGCGCAATTTTATTCTTGCTTGCCAGGATGAAGAGACTGGAGGCTTCGCTGACAGGCCTGGAGACATG

Function

symbol description
rabggtb Predicted to enable metal ion binding activity and prenyltransferase activity. Predicted to contribute to Rab geranylgeranyltransferase activity. Predicted to be involved in protein geranylgeranylation. Predicted to be part of Rab-protein geranylgeranyltransferase complex. Is expressed in female organism. Orthologous to human RABGGTB (Rab geranylgeranyltransferase subunit beta).

GO:

id name namespace
GO:0018344 protein geranylgeranylation biological_process

KEGG:

id description
K05956 RABGGTB; geranylgeranyl transferase type-2 subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_08857253_08860111.mRNA True 852 mRNA 0.49 7 8857253 8860111

Neighbor

gene id symbol gene type direction distance location
CI01000004_08847888_08849951 NA coding downstream 7225 8846758 ~ 8850028 (-)
CI01000004_08714010_08716995 NA coding downstream 140194 8713882 ~ 8717059 (-)
CI01000004_08592797_08594424 CLDN11A coding downstream 262634 8592314 ~ 8594619 (-)
CI01000004_08587419_08590454 NA coding downstream 266696 8587327 ~ 8590557 (-)
CI01000004_08361560_08363939 GHSR, GHSRA coding downstream 493234 8361268 ~ 8364019 (-)
CI01000004_08861514_08864815 MGC81873, ACADM coding upstream 1129 8861240 ~ 8864815 (-)
CI01000004_08878465_08881325 BEST4 coding upstream 18354 8878465 ~ 8881485 (-)
CI01000004_08887155_08890419 NA coding upstream 25648 8885759 ~ 8890419 (-)
CI01000004_08896031_08915598 NA coding upstream 35464 8895575 ~ 8915662 (-)
CI01000004_08931605_08938354 NDC1 coding upstream 70863 8930974 ~ 8938354 (-)
G29989 NA non-coding downstream 34776 8822269 ~ 8822477 (-)
G29986 NA non-coding downstream 41716 8813396 ~ 8815537 (-)
G29948 NA non-coding downstream 112847 8741906 ~ 8744406 (-)
G29929 NA non-coding downstream 181826 8675225 ~ 8675427 (-)
G29928 NA non-coding downstream 182188 8674825 ~ 8675065 (-)
G29955 NA non-coding upstream 12022 8872133 ~ 8873812 (-)
G29943 NA non-coding upstream 14586 8874697 ~ 8877199 (-)
G30009 NA non-coding upstream 118913 8979024 ~ 8980984 (-)
G30012 NA non-coding upstream 184314 9044425 ~ 9044678 (-)
G30013 NA non-coding upstream 189845 9049956 ~ 9050446 (-)
G29746 NA other downstream 499126 8354498 ~ 8358127 (-)
G29656 NA other downstream 891753 7964364 ~ 7965500 (-)
G29388 NA other downstream 2225346 6631293 ~ 6631907 (-)
CI01000004_06539836_06541252 NA other downstream 2311681 6538904 ~ 6541252 (-)
CI01000004_05617072_05627369 NA other downstream 3229739 5616644 ~ 5628289 (-)
G30316 NA other upstream 517826 9377937 ~ 9406921 (-)
G31203 NA other upstream 1886326 10746437 ~ 10750641 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other upstream 2547354 11406957 ~ 11412907 (-)
G32150 NA other upstream 2916408 11776519 ~ 11780951 (-)
G32207 NA other upstream 3516057 12376168 ~ 12384780 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location