LOC122342300 (LOC107575420,LOC107563545,LOC107575457,LOC107741456)


Basic Information

Item Value
gene id LOC122342300
gene name LOC107575420,LOC107563545,LOC107575457,LOC107741456
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21714679 ~ 21736541 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236095.1
TTCACAGAGGTGAAAGGATTCACTGACCAACAGAAGGAGGAGTACTTCAGAAAGAAATTCAAAGATCAGAGTGTGTcctccagaatcatctcacacattaagACGTCTTGTAgtctctacatcatgtgccacattcctgtgttctgctggatcacagccacagtacttcaggatattctcactgagaacaatgaagagaacatcagcacaacactcactgaaatgtacattcacttcctgAGGATACAGATGAACATGAAGAGTCAGAAATATGGCAAACAACAAGGAGAATGTTCAGAGCACttacttttaaatagaaagatGATTCTGAAGTTAGCCAAGCTAGCGTTTGAACAGCTGAAGcaggaaaacattgtgttctatGAGAAAGATCTGAAAGCATGTGGTATTGATGTGAGTAAAGATGCTGAGTTCACAGGAATGATCGCTGAGATCTTTAAGAGGGAAGTTGGACTTTATAAGACAAAGGTCTTCTGCTTTGTGCATCTGGGTGTTCAAGAGTTCCTtgctgcagtgcatgtgttcatctgttacctgaaaaaaaacaagcaagggcTTACGTTTTTCTTTGAGGATTCACAAACTACAGTCATACAAAATCTTACATTTCCTTTTAGAAAGGTCAAATTGCATGACTTAACAGAGAGAGCAATTGAAAAAGCAATGCAGAGTAAGAGAGGGCATCTGGACCTGTTCCTGCGGTTTCTGATGGGAATTTCAGTGGAATCCAGTCAAAATCTGCTCAAaggcctgatcacacacacCAAAGACACCACAGAGAGCATCAGAAATCTAAGTGCACACATTAAAGAATTACAACAACAGGACATCTCAGATGAAGCTTCAGTCAACCTGTTCTACTGCTTACTTGAGCTCAAAGATCATTCATTATATGAGGAGATCCAGAGTTACCTCAGTTCAGATGAACATCCAGGAAGAGATCTCTCATCTTCAATGTGTACAGTGCTGACCCACATACTACTGATGTCAGAGAAGGTGCTGGATGAGTTCAACCCAAAGAGGTTCACATCAAAACTAGCAGACTACAGGAGACTCATTCCAGCtgtgagatgctgcagaaaagctctATTTGACAACTgtggttttgatgaaacatgctgtgaaaCAGTGTCTTTTGCTTTACGATCATCAAACCATCTGACAGAACTGAACCTGAGTAATAATCAACTGaaagattcaggagtgaagttgctttctgatggactgaagaatTCACACTGTCGACCGAACATACTGAGGCTGTGTGGGTGTCATCTCACTGCTCAGTCCTGTGAAAGTTTATCTTCAACTCTACAATCATCAAACCATCTTACAGAGCTGAACCTCAGTGACAAccacctgcaggattcaggagtgaagctgctttctgatggactgaagaatTCACTCTGTCGACTGAACATACTGAGGCTGTGTGGGTGTCATCTCACTGCTCTGTCCTGTGAAAGTTTATCTTCAATTTTACAAtcatcaaactctgtcctgagagagatggacctgagtaacaatgacctgcaggattcaggagtgctGGTTCTTTTGGATGGAatgaagagtccaaactctaAGCTGGAGATACTGAGattttccacatgtaatctcactgcacagtCTTGTGGGAGTTTGTcatcagttttacaatcctcaaactctgtcctgaaagAACTGGACCTGAGCaacaatgatctgcaggattcTGGAGTGAAGCTTCTTTCTGATGGACTCAATAGTCCAATGTCTAAGCTGGAGATACTAAGATTTTCcacatgtaatctcactgcacagtcttgtgggagtttgtcttcagttttacaatcctcaaactctgtcctgagagAACTGGATCTGAGCaacaatgatctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaAATCTCTAAACTGGAGATACTAAGgttgtctggctgtatggtgacagaggaaggctgtcgttatgtgtcttcagctctgaattcaaacccctcacacctgagagagctggatctgagctacaatcacccaggagattcaggagtcaaactgctctctgaaaaactggaaGATCCAAACTGCTCTCTGAAAAAACTCAAAGTTGATCATGGAGGAGAAtccaggattacagcaggactCAAGAAATatgagtgtttttcacactggatccaaacacagcaaactCCTCGCTCTCATTCTCTGTCTGGAGAAGAACAGAAAGataGATTTGAAGCGATCAAGGTGTTATGTAGAGAGAGTGtgggacgctgttactgggagactgagtggagCAGAGATGTGgctatatcagtgtcatataagaacatcagcaggaaaGAGGGACTGGGtaaaagagaTCCCATCATCAGCAGAAAAAGAAGAACAGGAGAGTATGAAGATATctacagagtaggagtgtatgtggatgagagcgcagAACCTTTGTCCTTCTTTAGCAGCCTCTGA

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 12-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236095.1 True 2514 mRNA 0.42 11 21714679 21736541

Neighbor

gene id symbol gene type direction distance location
LOC122343036 LOC107563870,LOC107718524 coding downstream 51846 21655902 ~ 21662833 (-)
LOC122343099 NA coding downstream 60682 21651364 ~ 21653997 (-)
LOC122342299 NA coding downstream 84521 21629480 ~ 21630158 (-)
LOC122343039 NA coding downstream 172390 21537322 ~ 21542289 (-)
LOC122342973 LOC107685875,LOC107749047,LOC107728228 coding downstream 185733 21517473 ~ 21528946 (-)
LOC122342303 NA coding upstream 38557 21775098 ~ 21780619 (-)
LOC122342306 LOC107749047,LOC107728228 coding upstream 110579 21847120 ~ 21860284 (-)
LOC122343106 NA coding upstream 133874 21870415 ~ 21878792 (-)
LOC122343076 LOC107718513,LOC107692125 coding upstream 499216 22235757 ~ 22239007 (-)
LOC122343126 si:ch211-232d10.1,LOC107747635,LOC107569099,LOC107698614,LOC107574820 coding upstream 579367 22315908 ~ 22320097 (-)
G30425 NA non-coding downstream 38548 21673723 ~ 21676131 (-)
LOC122343179 LOC107667978,LOC107563545,LOC107741456 non-coding downstream 41255 21668810 ~ 21673424 (-)
G30408 NA non-coding downstream 214681 21499638 ~ 21499998 (-)
G30406 NA non-coding downstream 221772 21492264 ~ 21492907 (-)
G30343 NA non-coding downstream 588608 21117815 ~ 21126071 (-)
G30465 NA non-coding upstream 544131 22280672 ~ 22281189 (-)
G30499 NA non-coding upstream 622676 22359217 ~ 22421953 (-)
LOC122343195 NA non-coding upstream 659977 22396518 ~ 22398023 (-)
G30506 NA non-coding upstream 689051 22425592 ~ 22428757 (-)
G30518 NA non-coding upstream 750234 22486775 ~ 22487119 (-)
G30395 NA other downstream 328242 21383469 ~ 21386437 (-)
LOC122343135 NA other downstream 377798 21327615 ~ 21336881 (-)
LOC122343113 LOC107749046 other downstream 435636 21276222 ~ 21279043 (-)
LOC122343098 NA other downstream 660954 21048857 ~ 21053725 (-)
LOC122343123 NA other downstream 850273 20858423 ~ 20864406 (-)
G30372 NA other upstream 550 21737091 ~ 21740330 (-)
LOC122342302 NA other upstream 32583 21769124 ~ 21772399 (-)
G30450 NA other upstream 391913 22128454 ~ 22245160 (-)
G30457 NA other upstream 479494 22216035 ~ 22216470 (-)
LOC122342328 LOC107671223,LOC107685875,LOC107728228,LOC107749047,LOC107553362,LOC107574018,LOC107569032,LOC107575215 other upstream 1680350 23416891 ~ 23437015 (-)

Expression


Co-expression Network