LOC122342306 (LOC107749047,LOC107728228)


Basic Information

Item Value
gene id LOC122342306
gene name LOC107749047,LOC107728228
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21847120 ~ 21860284 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236101.1
GCAAGTGAAAGAAAGTTTGTGATGTTTACACTTGATCGTAGGAATACTTTTCTCACTTTTGAAAAGAAGATCATGAATCTTTTTCATTAGCTCATGTAGCAAGATAAGTGAACattaagggaaagcaaagacaTTTTCAGAAGTTGTCTAGAACCTGAACGTTTTGATCAAAGCAAGTCTTCagctgtggagcagaaagacacttccttattaatAGTCAGTGTTGGAGATCAAACTGTTCAAATCCatcatgaatgaaacacaaacatctggAGATGAAGATTATATTCCAGGCTGCAGttcagttcatcagaagagatcagaagcagagcccagctgtgtgtctgtgaagaGTGACTGGTCTATGGATCCGCCACTGTTGTTGAAGAGTGAAGATTTACAGCCTGGACTCAGTTCAattcatcagaagagatcagaagcagagtccagctgtgtgtctatgaagagaGAGACATCTTTCATTCAGTCTTTAGATTTTAAGAGACGAGATATATGGCCTGTTCTCAGTCATGAAGTCCTCAACACATTTAGATCAAATCTGCTGAAGAAGTTTAAGTGTCTGTGTGAGGGAACAGCGACGCAGAGAAACCCAACACTGCTGAATgagatctacacagagctctacatcacagagagtgagagaggagagatcaaTAATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGAGAAGCAACAGAGGACACAGCCATCAAATGCAGTGACATCTTCAGACCTTTACCTGGACAAGACAAAGACATCAGAACTGTGCTGACAAAGggagtcgctggcattggaaaaacagtctctgtgcagaagttcatcctggactgggccGAAGGGAAAGAGAATCAGGACGTCCAGCTcatatttccacttcctttcagagaaatcaacTTGATGAAGGACAAAACACTCAGTCTTTCAGATCTTCTTCACGTCTTCTTCCCTGAaactaaagaaatgaaaatatccagcgatgaatataaagtgttgttcatctttgatggtctggacgaGTGTCGTCTGTCTCTGGACTTCAAGAGTAAAGTGAAACTGTGTAATATATCTGAGTCAGCCTCAGTGgatgtgctgctgatgaacctgattgtggggaatctgcttccctctgctctcatctggatcacctccagaccagcagcagctgatctcGTCCCTTCTGAGTGCATCCATCGAGTGACAGAGGTACGAGGCTTCAATGAGACACAGAAGGAGGAATACTTCAGGAAGAGGATCAGTGATCAGAGTCTGGCCGACAGGATCATCTCACACCTGAAGTCCTCCAGGAGCCTCttcatcatgtgtcacatcccaATCTTCTGCTGCATCTCAGCCACTGTTCTTGAGAAGATCTTGAGTCGAGCAGAGACTGGAGAGATTCCTAAGACCctcactcaaatgtacacacacttcctgatccttcagaccaacatcaaacatgagaaAGACTATGAGAAGAACGTGACAGATGAAGACATGATCCTCAAACTGGGGAAACTGGCTTTTCAGCAGCTTATGAAAGGAAACCTGATCTTCTATGATGAAGACCTGAGAGAGTGTGACATTGATGAGACAGAAGCAACAGTTTACTCAGGACtgtgcactcagatcttcagagaggagcTGGGCTTGTTTCAGGGGAAAGTCTTCTGCTTTGTTCATCTGAGCCTTCAGGAACATCTAGCAGCTCTACATGCACACCTCTCCTTAACAATAAAGAAGATAAATGTGTTTGGCCAAATCAAACAAAATTCTTTCTTTAATGTCTTACACATATTTAGACCGTTATCTAAGCTGCATCAGAGAGCTGTGAATGAGGCTCTAAAGAGTAAGAATGGACATCTGGATCTTTTCCTGCGGTTTCTTCTGGGTCTCTCAGTGGAGTCCAATCAGACTCTCTTAAGAAAACTACTgacacagacaggaagctgcTCTTACAACAAAGAGGAAACAGTTCAGTTCATCAAAAAGAAGATCAGGGAGAATTACTCTTCAGAgaaatccatcaatctgtttcactgtttgaatgaactgggtgatgattcactgatgcaGGAGATCCAGGGTTTTCTGAAATATGGAGAAATAAGAGAAACCAAACTCTCCTCTTCACAGTGGTCAGCTCTGGTTTATGTGTTGCTGACATCAGAGCAGAAGATGGATATTTTTGATCTAAAAGAATTTATTGGACAACAACATACAGGAGATGAAATTCTTCAGTATCTGTTACCTGTGGTTAAAGAATACAGATCAGTTTGGCTATGTGGATGCAAACTCACTGCTCAGTcttgtgaaagtttgtcttcaattttacaatcctcaatctcaaacatcctgaaagagctggacctgagtaacaatggcctgcaggattctggagtgaagctgctctctgaaggactgaagagtccaaactgtcatctggagattctgagGCTATATGGAAGCAGTCTCACTGCTCAGTcttgtgaaagtttgtcttcagttttacaatccttaaactcaaacatcctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagctgctctctgaaggactgaagagtccagtgacagagaaaggctgtggttatgtgtcctcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatcctggagattcaggattgaagctgctctctgaaaaactagAGGACTCAACCTGCTCATTGGACAAACTGAATGTTGATCATGGAGGAGAATCCAGGATTACAGAAGGACTGAAGAAATgGGTGTGTTTTTTCAcgctggatccaaacacagcacacactaaaCTCagtctgtctgaggagaacagagagGTGATGtgggtgagagagaaacagctgtatcctgatcatccagacagatttgattgTGTGcctcaggtgttgtgtagagagagtgtgtgtggacgctgttactgggagactgagtggaAAGGACATGTGtgtatatcagtgtcatataagagcATCAGCAAAGAGAGGTGggtgaagtgtgtgtttggacGTAATattcagtcctggagtttgatctGTTCTCCTCACAGAtactcattcagacacaataCCATAGAGACTGGTCTCTCTGTGAAACCCATCatcagcagaagaagaagaagaacaggagagTATGATGATAATATTTCTAGaataggagtgtatgtggatgagagcgcaggaactctgtccttcttcagcgtctctgacacaatgagactcatccacacagtccagaccacattcactcagacactctgtcCTGGGTTTACTGTTTATCCtggatcatcagtgaaactgtgttgaaGAACAGTGAGATGTTATGAGTGTCTTCATACTACAGCTCAACTTCTGTCACTGAAATAACTGAAGAAATGTCACATTATGTCCCCACAAAGATCTGTACCAAAGTTTGACCTAGAAAGTAATAGaaacaaaatagaaacattttttttttctgtaaggggtaggtttaggtgtagggttggtgtagggcaatagaaaatacagtttgtacagtagaAAAACCGTTACAGATATGGAGAGTGCctataaaacatggaaacca

Function

NR:

description
PREDICTED: protein NLRC3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236101.1 True 3662 mRNA 0.43 11 21847120 21860284

Neighbor

gene id symbol gene type direction distance location
LOC122342303 NA coding downstream 66501 21775098 ~ 21780619 (-)
LOC122342300 LOC107575420,LOC107563545,LOC107575457,LOC107741456 coding downstream 110579 21714679 ~ 21736541 (-)
LOC122343036 LOC107563870,LOC107718524 coding downstream 184287 21655902 ~ 21662833 (-)
LOC122343099 NA coding downstream 193123 21651364 ~ 21653997 (-)
LOC122342299 NA coding downstream 216962 21629480 ~ 21630158 (-)
LOC122343106 NA coding upstream 10131 21870415 ~ 21878792 (-)
LOC122343076 LOC107718513,LOC107692125 coding upstream 375473 22235757 ~ 22239007 (-)
LOC122343126 si:ch211-232d10.1,LOC107747635,LOC107569099,LOC107698614,LOC107574820 coding upstream 455624 22315908 ~ 22320097 (-)
LOC122342947 NA coding upstream 465226 22325510 ~ 22334793 (-)
LOC122342948 LOC107575457,LOC107741609 coding upstream 525579 22385863 ~ 22395600 (-)
G30423 LOC107575420,LOC107667978,LOC107563545 non-coding downstream 37502 21676876 ~ 21809618 (-)
G30394 NA non-coding downstream 81295 21378582 ~ 21765825 (-)
G30425 NA non-coding downstream 170989 21673723 ~ 21676131 (-)
LOC122343179 LOC107667978,LOC107563545,LOC107741456 non-coding downstream 173696 21668810 ~ 21673424 (-)
G30408 NA non-coding downstream 347122 21499638 ~ 21499998 (-)
G30465 NA non-coding upstream 420388 22280672 ~ 22281189 (-)
G30499 NA non-coding upstream 498933 22359217 ~ 22421953 (-)
LOC122343195 NA non-coding upstream 536234 22396518 ~ 22398023 (-)
G30506 NA non-coding upstream 565308 22425592 ~ 22428757 (-)
G30518 NA non-coding upstream 626491 22486775 ~ 22487119 (-)
LOC122343153 NA other downstream 63529 21387853 ~ 21783591 (-)
G30396 NA other downstream 70314 21629617 ~ 21776806 (-)
LOC122342302 NA other downstream 74721 21769124 ~ 21772399 (-)
G30372 NA other downstream 106790 21737091 ~ 21740330 (-)
G30395 NA other downstream 460683 21383469 ~ 21386437 (-)
G30450 NA other upstream 268170 22128454 ~ 22245160 (-)
G30457 NA other upstream 355751 22216035 ~ 22216470 (-)
LOC122342328 LOC107671223,LOC107685875,LOC107728228,LOC107749047,LOC107553362,LOC107574018,LOC107569032,LOC107575215 other upstream 1556607 23416891 ~ 23437015 (-)
G31017 NA other upstream 1618241 23478525 ~ 23546369 (-)
G31050 NA other upstream 1885202 23745486 ~ 23771768 (-)

Expression


Co-expression Network