LOC122342313 (LOC107703281,LOC107657504,LOC107693510,LOC107570418)


Basic Information

Item Value
gene id LOC122342313
gene name LOC107703281,LOC107657504,LOC107693510,LOC107570418
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 22568224 ~ 22577494 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236105.1
ATGAGagaaatcaacTTGATGAAGGACAAAACACTCAGTCTTTCAGATCTTCTTCACGTCTTCTTCCCTGAaactaaagaaatggaaatatccagTGATGAATATGaagtgttgttcatctttgatggtctggacgaGTGTCGTCTGTCTCTGGACTTTAAGAaccagcagcatgATCTCGTCCCCTCAGAGTGCGTCCATCGAGTGACAGAGGTACGAGGCTTCAATGAGACACAGAAGGAGGAATACTTCAGGAAGAGGATCAGTGATCAGACCACTGTTCTTGAGAAGATCTTGAGTCGAGCAGAGACTGCAGAGATTCCCAAGActctcactcaaatgtacacacacttcctgatcctTCAGACCAACATCAAACGTGAGAAGGAGTATGAGGAGAAGGTGACAGATGAAGACATGATCCTCAAACTGGGGAAACTGGCTTTCCAGCAGCTAGTGAAAGGAAACCTGATCTTCTATGATGAAGACCTGAGAGAGTGTGGCATTGATGTGACAGAAGCATCAGTTTATTCAGGACTGTGCACTCAAATCTTCAGAGAGGAGCTGGGCTTGTTTCAGGGGAAAGTGTTCTGCTTCGTTCATCTAAGCCTGCAGGAACATTTAGCAGCTCTATATGTGCACCACTCCTTTACAGTCaacaaaatcaatgcatttgATGAAATCAAACAAAGTCTGTTGTCTAAGATTTTGAACCAGATGAAGTATAATTCATTATTGGAGCTGCATCAGAGTGCTTTAGAAATTGCCTTAAAGAGTAAGAATGGACATCTGGACCTTTTTCTGCGGTTTCTTCTGGGTCTCTCAGTGGAGTCCAATCAGACTCTCTTAAGAAAACTACTgacacagacaggaagctgctcctacaacaaagagaaaacagttCAGTTCATTAAACAGAAGATCAGGGAGAATCACTCTTCAGAgaaatccatcaatctgtttcactgtctgaatgaactgggtgatgattcactgatgcaGGAGATCCAGGGTTATCTGAAATCTGGAAAAATAAGAGAAATCAAACTCTCCTCTTCACAGTGGTCAGCTCTGGTTTATGTGTTGCTGACATCAGAGCAGAAGATGGATATTTTTGATCTAAAACAGTTTATTGGAGAACAACACACAGGAGATGAAGTTCTTCAGTATCTGTTACCTGTGGTTAAAGAATGCAGATCAGTTCGTGGGTACACACACCTCCCAGTGCTGGACACCCAGGTGTACGGTATCCCGGATGACGTAGTCAGTGACCGAGGAACACAGTTTACTTCCCAGTACGCCCAGAATTCACTTAACCAATCATCTACAGGTCTCACCCCCTTCCTGTGGTTCCAACCTCCTCTGTTCCTGTGGTCTGGTGAATCCTCCTCAGTCCCTGCGGTGGACGACTGGATTCGTCGGAGTGAGAAGGTGTGGGACAGTGCACATGTCCGTATCCAGCAGGCCATTAGAACACAGGAAATACAGGCCAACAGACAACATCTTACACACCCTCCCTACCAACCAGTGATCCACCCAGATGCTGACCCCAGCCTTGAGGCCCCAGAACCACCACCACATCTAGATATTGATGGGCTCCCACTTATCAGGTGA

Function

NR:

description
PREDICTED: protein NLRC3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236105.1 True 1614 mRNA 0.45 8 22568224 22577494

Neighbor

gene id symbol gene type direction distance location
LOC122343060 LOC107677814 coding downstream 68695 22495286 ~ 22499529 (-)
LOC122343006 NA coding downstream 136601 22429074 ~ 22431623 (-)
LOC122342948 LOC107575457,LOC107741609 coding downstream 172624 22385863 ~ 22395600 (-)
LOC122342947 NA coding downstream 233431 22325510 ~ 22334793 (-)
LOC122343126 si:ch211-232d10.1,LOC107747635,LOC107569099,LOC107698614,LOC107574820 coding downstream 248127 22315908 ~ 22320097 (-)
LOC122342314 LOC107575554,LOC107666720 coding upstream 852 22578346 ~ 22585463 (-)
LOC122343061 LOC107677814 coding upstream 10229 22587723 ~ 22593908 (-)
LOC122342315 NA coding upstream 23052 22600546 ~ 22608778 (-)
LOC122342316 NA coding upstream 59927 22637421 ~ 22643780 (-)
LOC122343051 LOC107710267,LOC107704474,LOC107730816 coding upstream 98964 22676458 ~ 22681205 (-)
G30525 NA non-coding downstream 67050 22500162 ~ 22501174 (-)
G30520 NA non-coding downstream 80055 22487420 ~ 22488169 (-)
G30518 NA non-coding downstream 81105 22486775 ~ 22487119 (-)
G30506 NA non-coding downstream 139467 22425592 ~ 22428757 (-)
G30499 NA non-coding downstream 146271 22359217 ~ 22421953 (-)
G30920 NA non-coding upstream 193361 22770855 ~ 22772854 (-)
G30926 NA non-coding upstream 210052 22787546 ~ 22789302 (-)
G30938 NA non-coding upstream 280765 22858259 ~ 22861620 (-)
G30967 LOC107561645 non-coding upstream 474254 23051748 ~ 23053620 (-)
G30992 NA non-coding upstream 686238 23263732 ~ 23264216 (-)
G30450 NA other downstream 323064 22128454 ~ 22245160 (-)
G30457 NA other downstream 351754 22216035 ~ 22216470 (-)
LOC122343153 NA other downstream 784633 21387853 ~ 21783591 (-)
LOC122342328 LOC107671223,LOC107685875,LOC107728228,LOC107749047,LOC107553362,LOC107574018,LOC107569032,LOC107575215 other upstream 839397 23416891 ~ 23437015 (-)
G31017 NA other upstream 901031 23478525 ~ 23546369 (-)
G31050 NA other upstream 1167992 23745486 ~ 23771768 (-)
G31091 kdm5a,LOC107710764,LOC107685890,LOC107693604 other upstream 1532730 24110224 ~ 24110673 (-)
G31134 NA other upstream 1726602 24304096 ~ 24497596 (-)

Expression


Co-expression Network