LOC122342314 (LOC107575554,LOC107666720)


Basic Information

Item Value
gene id LOC122342314
gene name LOC107575554,LOC107666720
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 22578346 ~ 22585463 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236107.1
ATGAGATTATCTAATCACCTGGAGGCTGTCACAGGACAGAGACATGGAAGGCCTCCTGGCTGGATCAGGGAGTTCTGGAGTCCATTTCGGATCTGGGTACTTGGGAAGCCATTTCGGGGCAGCCTTCAAGACTGTGATGTCAGTCCCCACCTCTACGGCTGGAGTCCTACTTATATTTTGACTTCACAGACACAGTCTTTACAGATTGGACAATGCAActcccctgggagTGGACCCTATGGTACAGACCTAGAAGAAGCTTCAGCTGTCTTCATCTCTGCTTCCGGGAGTTTTGATGAGAGTGCACTGAGACAATGTTCGTTTACTGTTAGTAGCCCAGTTCTGGCCGCTCATACCTTCTGGTCTTCCAGCCGAGGTGGTAGAGACCTTGCACCAACCAAGATCTCCCTCAACAAGGTAAGTGTATGCCCTGAAGAGGAAGTTATTCACCTCATGGTGCAGAGTTTaaaaagtaggaTCAATCGTAACACAGATTCTTCTAATAATGTCTTGACTGTCCTGGTTgagcagagaaacacagagcagGAGAAAGCAGCCCGTGTCGAGCTCTTCACTGATCTGATCCGCTCCATTGAGAGACTTCAGACCGAACTACTGGAGATGATAGAGGAGCAGCAGAAAGCAGCAGAGAAACAAGAGCGAGATCTGATTGAAGAGCTGGAACAGGAGATCTCTGAGCTAAAGATGAGAAACATTGAGCTGGAGCAGCTCTCACACACTAAAGATCACCTCCACCTCCTACAGATCTACTCATTCCTGAGCATTTCCAGAAACACCAGGAACTATCCTGAGATCAGTGTGAAGACTCATGAGAGTCTGGAGACTCTGAGGAGAGCTCTGACTCAACTGAAGAACACTATAGACGAGAAACTCTCACAAACTGTCTCTTCAGAGCTGAAGTGGATGCAGCAGTATGCAGTGGATGTGACTCTGGATCCTGATACAGCTCATCCTGATCTCATTCTGTCTGATGATGGAAAACAAGTGAGAGATGGAGACTTTACACAGAAACTCCCAGACAAACCTGAGAGATTTGATATATGTGTAAATGTCCTGGGAAAGGAGGGATTCTCCTCGGGGAGATTTGAAGTGCAGGTAAAAGAAAAGACTGAATGGATTTTAGGAGTGGCCAGAGAATCCATTCACAGGAAGGGACAGATCAAACTGAGTCCCAGAGATGGATACTGGACTTTGATTCTGAGGAATGGAGATGAATATAAAGCCTGTGAGGATTGtcgtgtctctctgtctctgagaGTGAAGCCACAGCGGGTTGGTGTGTTTGTGGATTATGACGAGGGTCTGGTCTCCTTTTATGATGAGTCCAGCTCTCATATCTACTCTTTCACCGATCAGTCTTTCACTGAAAAACTCTATCCATTATTTAGCCCATCCTTAAACTATGGAGGTAAAAACTCAAATCCACTGATCATCACACCTGTcagttataataaatgaatttctCTTGATATGAAATACAAGATTATAgttatgatttttataaattgttatgtgctgctctttttttttcaatttttgaaaatgcaataatttgatattttaatatataatatgcacattattaatgtaatgatgcaaatgtttattatatttttcataaaacattatatttttcataaaacatgcCATTTTATTCCTCCATCTCAATGTGACAAAGTGAAATTtcctgtaaaaacagtaataccctgtcaaaaagctgaaaaaagacGAAGTAGATGAACACCCCAAAGCTTGACAGTCATTTTACCTCTTCATTGGTCAACATTTCATTCCACATTTTTGAAGCTGCTTTACGTCTGATGATTGTGTTAGATTACACGTGGAAGCATCTATTGAGATTATCTAAGATTATCTATCTAAGATTCTTCTTCacttggttatttttttatttattttaattcttatttattttaaaaaaccctCTAACGTAAAACAGATTCTAGGAGCACAGTATAACTTCTATATACTTAGACTTATAAATAGATTAATTGTTTATTACTGATTTCATTAGTTTTATAGTCACAGATTATACTAAATGTAgtggaaatgtaaataaatgatacaaaaaaagtatgctaaacaaatattaatccATTAAGAGTTATATACTGAGCACTGAAATATCACTAAAATCTCTCGAATAATTCCAGTCTCTGTTGTTCAGTCGTATGTTAGTTTGAATTATAACCTGA

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM39-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236107.1 True 2234 mRNA 0.39 7 22578346 22585463

Neighbor

gene id symbol gene type direction distance location
LOC122342313 LOC107703281,LOC107657504,LOC107693510,LOC107570418 coding downstream 852 22568224 ~ 22577494 (-)
LOC122343060 LOC107677814 coding downstream 78817 22495286 ~ 22499529 (-)
LOC122343006 NA coding downstream 146723 22429074 ~ 22431623 (-)
LOC122342948 LOC107575457,LOC107741609 coding downstream 182746 22385863 ~ 22395600 (-)
LOC122342947 NA coding downstream 243553 22325510 ~ 22334793 (-)
LOC122343061 LOC107677814 coding upstream 2260 22587723 ~ 22593908 (-)
LOC122342315 NA coding upstream 15083 22600546 ~ 22608778 (-)
LOC122342316 NA coding upstream 51958 22637421 ~ 22643780 (-)
LOC122343051 LOC107710267,LOC107704474,LOC107730816 coding upstream 90995 22676458 ~ 22681205 (-)
LOC122343088 znf728,LOC107572918,LOC107713773 coding upstream 104875 22690338 ~ 22692710 (-)
G30547 NA non-coding downstream 8288 22569635 ~ 22570058 (-)
G30525 NA non-coding downstream 77172 22500162 ~ 22501174 (-)
G30520 NA non-coding downstream 90177 22487420 ~ 22488169 (-)
G30518 NA non-coding downstream 91227 22486775 ~ 22487119 (-)
G30506 NA non-coding downstream 149589 22425592 ~ 22428757 (-)
G30920 NA non-coding upstream 185392 22770855 ~ 22772854 (-)
G30926 NA non-coding upstream 202083 22787546 ~ 22789302 (-)
G30938 NA non-coding upstream 272796 22858259 ~ 22861620 (-)
G30967 LOC107561645 non-coding upstream 466285 23051748 ~ 23053620 (-)
G30992 NA non-coding upstream 678269 23263732 ~ 23264216 (-)
G30450 NA other downstream 333186 22128454 ~ 22245160 (-)
G30457 NA other downstream 361876 22216035 ~ 22216470 (-)
LOC122343153 NA other downstream 794755 21387853 ~ 21783591 (-)
LOC122342328 LOC107671223,LOC107685875,LOC107728228,LOC107749047,LOC107553362,LOC107574018,LOC107569032,LOC107575215 other upstream 831428 23416891 ~ 23437015 (-)
G31017 NA other upstream 893062 23478525 ~ 23546369 (-)
G31050 NA other upstream 1160023 23745486 ~ 23771768 (-)
G31091 kdm5a,LOC107710764,LOC107685890,LOC107693604 other upstream 1524761 24110224 ~ 24110673 (-)
G31134 NA other upstream 1718633 24304096 ~ 24497596 (-)

Expression


Co-expression Network