LOC122342332


Basic Information

Item Value
gene id LOC122342332
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24232366 ~ 24244625 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236123.1
ttttattttgacggggtGGCGTGACGTCATGTTTCTGCGCCGCGCTCCGGCCTCTGCGACTCGGCCGAAGAAagATAAACTCCGGCTGAAGCGACGGAGGTCCATGAGATggcgtttattaaagaggagagagaagagctGAGGATTGAGACTGAAGACGAGACCAAGGAACAGCAAACAAAGGTGGCGTTTATTAAAGTTGAGAGTGAAGACGTGAGGATGCAAGTCAAACGTGAAGAGACTGATGCAGGCCTGATGGAGCTGAAAGAGGAGAGTCGAGAACTGGATGAAACAGAAGAGATGAATCAGTGTGAGATAAATGACGATCTCAAGGCTGGAGAACAATCTTACTGTTACTCACAGACTTATAAAACAGTAAGTACAAACCCTGAGGTCCAGATGAGTGTTCACGCTGCAGAGAGCCCTTTCACCTGCCAACACTGTGAAAGGAGTTTCAGTGAAGAAGAAAGCCTCAGAAGTCACTTGAAGATCCACACAGGAGAGAATGTGTTCATGTgtcctcagtgtggaaagagcttcacACAGAAAAAATCCCTTAACGcccacatgagaattcacacgggagagaagccttacTCCTGCCAGCTGTGTGGGAAGAGCTTCAGACGAAGAGAAGGTTTCAGGTCTCACATGACggttcacactggagagagtCCTTTCACCTGCCCACAGTGTGGAAGGGGCTTCAACAGAAAACAAAGCCTTAAGAGCCACTTGAATATCCATGCAGGAGAGAAGCCGTTCAcctgctctcagtgcggaaagagttttACTCAGAAATCAACCCTTAACGGCCACATTAAAATCCActccggagagaagccttactcCTGCCAGCAGTGTGGGAAGAGCTTCTCAGTAAAAGGAAGTCTTAAAAttcacatgagaattcacaccggagagaagcccttcatctgctctcagtgtggaaagagcttcaAACAGAAGAAAGAACTTGATGGTCACCTGAGGGTtcacacgggagagaagcctttcgattgtgatcagtgtggaaagagtttcggATATAAGTCACATCTCAATAAACACATGAGGCTTCACTCGGGAGAGAACTGTTTTATATGTCagcagtgtgggaagagtttctcacacaaagctaaCTTTGAGAATCACATGAGAACTCACTccggagagaagcccttcacctgtcctcagtgtggaaagagcttcacGGTTAAAGGAAACCTTAAGAttcacatgagagttcacactggagagaagccttacaagTGTCCTCAGTGTGACACCAGCTTCACAAATAACACAAACCTGAAACGACACTGGAAAACTCATGCTGAAAATAAACTTCTGCTCTTCTCAGTAGCTGGCATCGACTTTCCCGGGGAGGCTGAGGGGTGTGATCGCCCTGTAGTTGGAGCAGACCCTCCGGCCTGCCTTCtgaaaaagaggaaccaccagcccagtccagaggcactgtcccccaCCTCCACGCGATGCTGTCAGGCGTGTCAGTCAAGACAGCCCTACagcatccagagacctgaggaaCTCAGGACGGATCTTATCCACCCCTGGTGctttgccaccgaggagcttttTAActacctcaTGATGGACTCACTTCTACTTTTTCAACAGAAGAGACCCACGGCACACACTGTTATAAACATGgtgtttattaaagaggagacgGAAGAATTTAGGATCGAAGAGGTTTTCACAATCAAACAAGAACACACCGAGGAACAAGCAGacctAATGGTGCTGAAAGTCGAGAGTCAACAAACGAATGAAATCGAAGAGCAACAACGTGATCCCAAGACTACAGACAAGCCTTTCGCATGCCAGCAGTGTGGGAAGTGCTTCAGTCGAAAACACAACCTTGGGGTCCACGCCAGAATTCACAAGGGAAAAACGCCCTACGCATGTCTACAGTGTGGGTTGAGCTTCGCTCTGAAGAGAGAGCTGAAGCAGCACATGAGCATTCACACGTTCGTCTGCCAGCAGTGTGGGAAGAGCTTCCCTGACCAGAGACGGCTTAAAAACCACATGATAGTCCACGCCGCGAAGGAGCACTTCTTCTGCCAGCAGTGCGGGAAGACGTATACGACCAAGCATTACTTTCGCAATCACGTGAAAACGCACACCGGAGAAAGCCCGTTCCGCTGCCAGCAGTGTGGGAAATATTTCGCTCAGAAAGAAAGCCTGAAGCTCCACGTGAGATCTCACACGGGAGAGAGGCCTTACACCTGCACGCGCTGCGGGAAGAGTTTCGCCCAGAAATCCGTCCTGGACTTCCACGTGAACATTCACACGGGAGAGCGATCGTTCCCCTGCCAGCAGTGCGGGAAGAGATTCACCCGGAAGCAGAGTCTGGGAGTCCACAGGAGactccacaccggagagaagccttacacgTGCCCTCAGTGTGGGAAGAGCTTCACCTATAAAGTCACGCTGGACAGCCACTTGAGCGATCACACGGGACAGAAGCCCTTCGCGTGcgatcagtgcgggaagagcttcaccaCGTCTCTGAACTTCCAGTGCCACAAGAACAGTCACGCCGGGGTCAAGCCGTTCGCCTGTCACGAGTGCGGCAAGAGCTTCAGCCATAAAAACACCCTCTACGTTCACAAGAGGATTCACACGGGAGCGAGGCCGTACACCTgccagtgcgggaagagcttcacgcAGAAGGGAAACCTGGAGAAACACACCCGGACTCACACGGGAGAGAAGTCCACGCCACGGAAGTCAGCTCCGCCGGCACCCTGCGGCCGAAAGCGATCCGCGCCTCCTGAGGACTCCATAAAAATGGAGAGTGGAGGTTCATTCAGAGTCAAACATGAAGAGACCGAGGAACAAACAGACCTGATTCTGCGTGAGCCGGAGGAGAAAACTCACCAGAAGCCTCCCGTCGGCTCTGAAGAGCCCAGAAAGAGGGTTTCTCCTCAGAAGAGAGCCCAGAAGGAGGGCGCTTTCTCCTGCCCTCAGTGCGGCAAGATCTTCAAGCAGAAGGAAAACCTGAAGGTGCACCTGAGGGTCCACAGCGGAGAGAAGCCCTTCTCCTGCCCTCGCTGCGGCAGGAGCTTCAGCCAGAAGGTGAGCCTGACGCTCCACAGCAAGGTCCACACCGGAGAGACGCCGTTCTCCTGCTCGCTGTGCGGCGCTCGCTTCACCGAGAGGAGGAGCCTGGAGATCCACGGCAGGATCCACAGCGGAGAGAAGCCCTTCTCCTGCTCGCTGTGCGGACGCCGCTTCATCCGGAGAGAGGACCTGAAGAGCCACGTGAGggtccacaccggagagaagcccttcTCCTGCCCTCGCTGCGACAAGAGCTTCAGCCAGAAGGGGAACCTGTCCACTCACCTGAGGATCCACAGCGGGGAGAAGCCCTTCGTCTGTCTGCAGTGCGCCAGCAGCTTCAGGAGCAAAGCCAACTTCAACTGCCACATGAGGAAGCActcctga

Function

GO:

id name namespace
GO:0043170 macromolecule metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0006265 DNA topological change biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236123.1 True 3480 mRNA 0.53 8 24232366 24244625

Neighbor

gene id symbol gene type direction distance location
LOC122342331 NA coding upstream 6537 24222077 ~ 24225829 (+)
LOC122343033 NA coding upstream 75867 24152756 ~ 24156499 (+)
LOC122343029 LOC107717679,LOC107693607,LOC107575410 coding upstream 82907 24144732 ~ 24149459 (+)
LOC122342945 LOC107563545 coding upstream 87795 23633798 ~ 24144571 (+)
LOC122343090 NA coding downstream 150 24244775 ~ 24252528 (+)
LOC122342333 NA coding downstream 8042 24252667 ~ 24259516 (+)
LOC122343118 LOC107677819,LOC107725800 coding downstream 64802 24309427 ~ 24312747 (+)
LOC122342339 NA coding downstream 75015 24319640 ~ 24322138 (+)
LOC122342343 NA coding downstream 169833 24414458 ~ 24415226 (+)
G30743 LOC107685875,LOC107728228,LOC107569032,LOC107749047,LOC107574018,LOC107576424,LOC107705465,LOC107564371,LOC107671223,LOC107570416 non-coding upstream 20886 23787750 ~ 24211480 (+)
G30723 NA non-coding upstream 29694 23769174 ~ 24202672 (+)
G30748 NA non-coding upstream 201625 23907305 ~ 24030741 (+)
G30754 NA non-coding upstream 222475 24003642 ~ 24009891 (+)
G30751 LOC107671223,LOC107569100,LOC107575457,LOC107747635,LOC107679413,LOC107566978,LOC107670352 non-coding upstream 230802 23978432 ~ 24001564 (+)
G30819 NA non-coding downstream 65714 24310339 ~ 24314288 (+)
LOC122343172 NA non-coding downstream 173218 24417843 ~ 24419568 (+)
G30812 NA non-coding downstream 211397 24456022 ~ 24486887 (+)
G30877 NA non-coding downstream 470072 24714697 ~ 24714998 (+)
G31223 NA non-coding downstream 744242 24988867 ~ 24989274 (+)
LOC122342990 NA other upstream 90920 24133050 ~ 24141446 (+)
LOC122342976 usp15,LOC107685889 other upstream 100879 24117289 ~ 24131487 (+)
LOC122342321 LOC107741609,LOC107575420,LOC107710255 other upstream 1064359 23163695 ~ 23168007 (+)
G30632 NA other upstream 1072610 23157559 ~ 23159756 (+)
G30636 LOC107575420,LOC107667978,LOC107563545,LOC107741456 other upstream 1102177 23129106 ~ 23130189 (+)
LOC122343028 pacsin2,LOC107725788,LOC107569113 other downstream 209645 24454270 ~ 24466400 (+)
LOC122343023 LOC107568558,LOC107685877,LOC107725785,LOC107728057 other downstream 220829 24465454 ~ 24471450 (+)
LOC122343159 NA other downstream 391727 24636352 ~ 24638654 (+)
LOC122343125 NA other downstream 394464 24639089 ~ 24646601 (+)
LOC122343086 NA other downstream 428266 24672891 ~ 24674412 (+)

Expression


Co-expression Network