LOC122342346 (LOC107581033)


Basic Information

Item Value
gene id LOC122342346
gene name LOC107581033
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24542138 ~ 24544170 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236131.1
ATGTTGGCCCGTCACAGTGTTCTCATGGTTGTGGTCTTTGGGATGGTGTTGAGCGGgctCATTTACCTGAACAACATCCAGTGCAGGTTGGTGTACAAGCAGCCGGACGTGTTGGCAGGtcGTACGGATGTTGCGTCGGTGTCACCGTGGTCCGCTCCAATCATCTGGGAGGGAAACTTTGACTCGGCGCTGATCGACTCTATCTACAAACAACACAATctcaccatagcaaccacagtCTTCGCTATGGGAAAATACACGCGTTTTGTCAAAGATTTTCTGGAGTCAGCGGAGGAACATTACTTCGTCGGATTTCGAGTGCATTTCTACCTGTTTACGGATCAGCCAGAATCGGTTCCTGAGGTGAAGATGGGTGAAAACCGTACTCTGACAATTCAGAAGGTTCCGGTTTTGAACCGATGGCAGGACATCAGTATGAGCAGGATGGAAAAACTGGAAAAACTGATAGAGACTGAACTAGCCTCCAAGGCGGACTACATTTTTTGCCTTGACGTAGATACAAAGTTCTACGGGCGCTGGGGTGCGGAGACCTTGGGTCGTCTGGTAGGTGTGATACATCCTTATCTCTATAATGTTCCAAGGAATCAGTTCACCTACGAGCGCAGACCAGCGTCTAAAGCTTACATTGCCGCTGAAGAAggtgattattattatgccGGTGCTGCATTTGGTGGATCGTTGGAGGATGTGCATCATCTCACCAGAACCTGCAGAGAGCAGCTGAGCATCGACGCCGCGAACTCCATTGAGGCCGTATGGCAAGAGGAGTCTCACTTGAACAAGTATTTCCTTTTGAACAAACCCAGTAAACTGCTCTCTCCTGAGTATATGTGGCGGGGCATCAGTGAACAAGCAGCCCCGATAAAGATCGTTCGCTTCACTAATGTACCTAAAAACTATGCTGAAATTCGCCCGAACCCGTAG

Function

NR:

description
PREDICTED: histo-blood group ABO system transferase-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236131.1 True 945 mRNA 0.49 5 24542138 24544170

Neighbor

gene id symbol gene type direction distance location
LOC122343108 LOC107677819,LOC107725800 coding downstream 49639 24485362 ~ 24492499 (-)
ckap4 NA coding downstream 62224 24476996 ~ 24479914 (-)
LOC122342338 NA coding downstream 223026 24312842 ~ 24319112 (-)
LOC122343156 LOC107674852,LOC105007321,LOC107551422,LOC103361099,LOC107732279,LOC107677819,LOC107725800 coding downstream 275531 24265349 ~ 24266607 (-)
LOC122342994 LOC107749047,LOC107685875,LOC107728228,LOC107570416,LOC107671223 coding downstream 322130 24207655 ~ 24220008 (-)
LOC122342998 NA coding upstream 13962 24558132 ~ 24564000 (-)
LOC122342983 NA coding upstream 38797 24582967 ~ 24593953 (-)
LOC122343065 NA coding upstream 82894 24627064 ~ 24631306 (-)
LOC122342349 NA coding upstream 419804 24963974 ~ 24981623 (-)
LOC122342351 NA coding upstream 487964 25032134 ~ 25034674 (-)
G31115 NA non-coding downstream 1799 24298780 ~ 24540339 (-)
G31155 NA non-coding downstream 75582 24465363 ~ 24466556 (-)
G31124 NA non-coding downstream 77244 24453461 ~ 24464894 (-)
G31121 NA non-coding downstream 83879 24457414 ~ 24458259 (-)
LOC122343161 LOC107743936,LOC101883431 non-coding downstream 93848 24445529 ~ 24448290 (-)
G31165 LOC107685875,LOC107671223,LOC107570416,LOC107728228,LOC107749047 non-coding upstream 9248 24553418 ~ 24683082 (-)
G31179 NA non-coding upstream 92091 24636261 ~ 24639737 (-)
G31189 NA non-coding upstream 123468 24667638 ~ 24669294 (-)
G31192 NA non-coding upstream 143358 24687528 ~ 24688132 (-)
G31194 NA non-coding upstream 153737 24697907 ~ 24710380 (-)
G31134 NA other downstream 44542 24304096 ~ 24497596 (-)
G31120 NA other downstream 46960 24306501 ~ 24495178 (-)
LOC122342340 NA other downstream 214875 24323970 ~ 24327263 (-)
G31091 kdm5a,LOC107710764,LOC107685890,LOC107693604 other downstream 431465 24110224 ~ 24110673 (-)
G31050 NA other downstream 770370 23745486 ~ 23771768 (-)
LOC122342407 LOC101068103,LOC105418166,LOC106522608,LOC108412963,LOC105419408,LOC108431938,LOC107395447,LOC106674638 other upstream 209886 24754056 ~ 24760786 (-)
G31314 NA other upstream 1014870 25559040 ~ 25561198 (-)
G31394 NA other upstream 1629529 26173699 ~ 26175249 (-)
G31400 LOC102197881 other upstream 1780309 26324479 ~ 26325236 (-)
G31463 LOC107665166,LOC107752513,LOC107549841 other upstream 2822242 27366412 ~ 27367649 (-)

Expression


Co-expression Network