LOC122342385 (LOC107749047,LOC107728228,LOC107574018,LOC107722090,LOC107685875,LOC107553362,LOC107569032,LOC107669894)


Basic Information

Item Value
gene id LOC122342385
gene name LOC107749047,LOC107728228,LOC107574018,LOC107722090,LOC107685875,LOC107553362,LOC107569032,LOC107669894
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 28970251 ~ 28993117 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236156.1
atGATTCTGAAGTTAGCCAAGCTAGCGTTTGAACAGCTGAAGcaggaaaacattgtgttctgTGAGAAAGATCTGAAAGCATGTGGTATTGATGTGAGTAAAGATGCTGAGTTCACAGGAATGATCGCTGAGATCTTTAAGAAGGAAGTTGGACTTTATAAGACAAAGATCTTCTGCTTTGTGCATCTGAGCGTTCAAGAGTTCCTCGCTGCAGTGCATGTTCAAAATCTGCTGAAAGGCCTGATCACACACCCTGAAGACACTACAGAGAGCATCAGAAATCTAAGTGCCCACATTAAAGAATTACAACAACAGGACATCTCAGATGAAGCTTCAGTCAACCTGTTCTACTGCTTACTTGAGCTCAAGGATAATTCATTATATGAGGAAATCCAGAGTTACctcagttcaaatgaacatccaGGAAGAGATCTCTCATCTTCAATGTGCACAGTGTTGACCTACATACTACTGATGTCAGAGAAGGTGCTGGATGAGTTCAACCCAAAGAGGTTCACATCAGAACAATCAGACTACAAGAGACTCATTCCAGCtGGTGTGtttttcacactggatccaaacacagcagaCACTCGTCTCattctgtctgaggagaacagaaaggTGAAGTGGgtgtctcagtctcagtcgtatcctgatcatccagacagatttgatggtGTGtatcagCTTCTTCCTCGTAGCCTCAGCACTGCTCTAAACAGGAAGAACCTTgctgagaaaaagaaagtgaaagcaGATTATGTTTTACATGCGACGTTTACACTTGATCAGTCAGTGTTGAAGATCAAACTGTTCAGATCCatcatgaatgaaacacaaacatctggAGATGAAGAGTATTCTCCAGCCTGCAGctcagttcatcagaagagatcagaagcagagcccagctgtgtgtctatgaagagtgACTGGTCTATGGATCCGCCAATGAAGTTTAAGAGTGAAGATTCACAGCCTGGACTCGGttcagttcatCAGAGGAGATCAGAAGCAgagtccagctgtgtgtctatgaagagaGAGACATCTGTGATTCAGTCTTTAGATTTTAAGAGAGGAGTCCTCGACACACTTAGATCAAATCTGCTGAAGAAgtttgagtgtctgtgtgagggaGCAGCGACGCAGAGAAACCCAACACTGCTGAATgagatctacacagagctctacatcacagagagtgagagaggagagatcaaTAATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGAGAAGCAACAGAGGACACAGCCATCAAATGCAGTGACATCTTCAGACCTTTACCTGGACAAGACAAAGACATCAGAACTGTGCTGACAAAggagtcgctggcattggaaaaacagtctctgtgcagaagttcatcctggactgggccGAAGGGAAAGAGAATCAGGACGCCCAGCTcatatttccacttcctttcagagaaatcaacTTGATGAAGGACAAAACACCCAGTCTTTCAGATCTTCTTCACGTCTTCTTCCCTGAaactaaagaaatggaaatatccagcaatgaatataaagtgttgttcatctttgatggtctggacgaGTGTCGTCTGTCTCTGGACTTTAAGAGTAAAGTGAATCTGTGTACTATATCTGAGTCAGCCTCAGTGgatgtgctgctgatgaacctgattgtggggaatct

Function

NR:

description
PREDICTED: protein NLRC3-like

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236156.1 True 1699 mRNA 0.44 7 28970251 28993117

Neighbor

gene id symbol gene type direction distance location
LOC122342381 LOC107665446,LOC107595396,LOC107713214,LOC107553351,LOC107753194,LOC107676404 coding upstream 375256 28593877 ~ 28594995 (+)
celf6 celf6,LOC106535005 coding upstream 432919 28421249 ~ 28537332 (+)
LOC122343436 parp6,LOC107668484,LOC107665100,LOC106587213 coding upstream 559941 28387507 ~ 28410310 (+)
dhdh.2 zgc:101723,LOC107665090,LOC107712874 coding upstream 602773 28360946 ~ 28367478 (+)
dhdh.1 LOC107665437,LOC107668471,LOC107709394,LOC107553352 coding upstream 610009 28354430 ~ 28360242 (+)
LOC122343449 NA non-coding upstream 111736 28856131 ~ 28858515 (+)
G31665 NA non-coding upstream 317418 28646977 ~ 28652833 (+)
LOC122342517 NA non-coding upstream 376384 28568285 ~ 28593867 (+)
G31653 NA non-coding upstream 428318 28520984 ~ 28541933 (+)
LOC122342705 NA non-coding upstream 584297 28380612 ~ 28385954 (+)
G31845 NA non-coding downstream 4611 28997728 ~ 29002977 (+)
G31846 NA non-coding downstream 10679 29003796 ~ 29023855 (+)
G31847 NA non-coding downstream 12165 29005282 ~ 29024602 (+)
G31848 NA non-coding downstream 13520 29006637 ~ 29025893 (+)
LOC122343231 LOC107747643,LOC107741456,LOC107747810,LOC107734660 non-coding downstream 162316 29155433 ~ 29165907 (+)
LOC122343276 LOC107561645,LOC107679413,LOC107569100,LOC107747810,LOC107734660,LOC107655025 other upstream 76624 28830635 ~ 28893627 (+)
G31649 NA other upstream 617025 28350353 ~ 28353226 (+)
G31636 NA other upstream 649557 28285027 ~ 28320694 (+)
LOC122342379 myo7aa,myo7a,LOC107660700,LOC107735900,LOC107600840 other upstream 652669 28297302 ~ 28317582 (+)
G31619 capn5,capn5a,LOC107713096,LOC107600851,LOC107660684 other upstream 748834 28218733 ~ 28221417 (+)
LOC122342386 LOC107670352,LOC107565530,LOC107659779,LOC107747635,LOC107566978,LOC107561645,LOC107665206,LOC108183462,LOC107749046,LOC107574515,LOC107671223,LOC107663329,LOC107575399,LOC107576964,LOC107571858,LOC107575109,LOC107698614 other downstream 12648 29005765 ~ 29185529 (+)

Expression


Co-expression Network