kcnc2 (kcnc2,LOC107555885)


Basic Information

Item Value
gene id kcnc2
gene name kcnc2,LOC107555885
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 136003 ~ 171334 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236159.1
gagagagagagagagagagagagagagagcgcgcgaGAAAGAAAGCGAGCGTGCTCTTGTTGCTCCGAAGCGCGAGCCGcaggtgatgatgatgaggatgaggatgaggatgggtCGATAGAAGGAAGAGCTACTGCTTTCTTTCACCTgtccgcgcgcgcgcgctcggcTCGTCTCGCTCGCCGCGAACAAAGCGAAGCGTTCGGCTCAACCCATCACTTCAATGAGGCTGTTCGGGAACTATTGGAGTACTCCAGCTTCGCCACAGCAGCACCGTAGAGTAACGTTACTCCCCTCGCGTCATGTCTCACTCTGAGAGATGGGCAAGTTCGACGAGCACGAGAGGGTGATCCTCAACGTCGGGGGCACGAGGCACGAAACCTACCGGACCACGTTAAAGACCCTGCCGGGCACGCGCTTGGCCCTGCTCGCCTCCGAGTCGGACCTCGAGTCGGTTCTGGGCCAGCTGCAACAAGTCCCGGGCTTCATCGAGTACAACGCGCGCAGCAACGAGTATTTCTTTGACCGGCACCCAGGCGTCTTTGCCTACGTGCTCAACTATTACCGGACAGGTAAGCTGCACTGCCCGGCGGACGTGTGCGGACCTCTGTTCGAGGAGGAGCTGTCCTTCTGGGGCATCGATGAGACGGACGTGGAGCCGTGCTGCTGGATGACCTACCGACAGCACCGGGATGCCGAGGAGGCGCTCGAGGTGTTCGAGATGAACGTGGACAACGATGAGGACGACGAGTACGGCAAGCGGCTGGGCATCGAGGACGTGGTGTCCGCGGACGGTACCGGCAGCAGGTGGAGGAAGTGGCAGCCGGTCATCTGGAACCTGTTCGAGGACCCGTACTCCTCCAGAGCCGCTCGGTTCATCGCTTTCGCCTCCCTGTTCTTCATCCTGGTCTCCATAACCACCTTCTGCTTGGAGACGCACGAGGCCTTCAACACGGTCATCAACAAGACGGACTCCTTCCGCAACGACTCGTTCACGGACTTCAGCCAGCAGTACGAGATCGAGACGGACCCGGCGCTCACCTACGTGGAGGGCGTCTGCGTGCTGTGGTTCACCTTTGAGTTCCTGGTGCGCGTCACCTTCAGCCCGGACAAGCTGGAGTTCGTCAAGAGCATCCTGAACATCATAGACTTCGTGGCCATTCTGCCCTTTTACCTGGAGGTGGGCTTGAGCGGGCTCTCCTCCAAAGCCGCCAAAGACGTCCTGGGCTTCTTGCGCGTGGTCCGCTTCGTGCGTATCTTGAGGATCTTCAAGCTGACGCGGCACTTCGTGGGCCTGCGCGTGTTGGGACACACCCTGCGGGCGAGCACCAACGAGTTCCTGCTGCTCATCATCTTCCTCGCGCTGGGCGTCCTCATCTTCGCCACCATGATCTACTACGCCGAGCGGATCGGGGCCAGCCCCAACGACCCGACGGCCAGCCACCACACCATGTTCAAGAACATCCCCATCGGCTTCTGGTGGGCCGTGGTCACCATGACCACTCTGGGCTACGGAGACATGTACCCTCAGACGTGGTCGGGCATGGTGGTGGGCGCGCTCTGCGCCCTCGCCGGAGTCCTGACCATAGCTATGCCCGTGCCCGTCATCGTCAACAACTTCGGCATGTACTACTCGCTCGCCATGGCCAAGCAGAAGCTGCCTAAGAAGAGGAAGAAGCACATCCCTCAGGCGGTGCAGACCGGATCGCCGTCCTACTGCAAGACGGACCTGAGCACGGCCTGCAACAGCACTCAGGGCGAGCTGTGTTTGGGTCAGAGCCGAGGACTGGAGCGCCACCGCTCAGTGCTGTCTGCCGACTGCAGcgcaggaagtgacatcaccaTGTCTCCGGAGGAGCGGATCCCGATGCGACTGTCCAGCGCTCGAGAACAGGACCGTCACACCGAAGGCACCTGCTTCCTGCTGGCCGCCAGCGACTACACCTGCTCGGCAGACGCAGCCATCCGCAAAACAGCTACTGTATCACCTCTGGCTGACGTACAGTTTATATCGGCCAGAGACGGGGAAGGCGGGGCCAGCAGAGACTCAGATGGATTTGATGAATTGGATTGGACGGTCTGGAATAGAATAAGCCTGTGATTGGACGGTTCTGAAGCGGACTCTCTGTGAACAGAAACCTCACTTGAACTGCTCACGACCTGTGGATTTtcccgcttttttttttttttttttttttcggtgtGGATAAAGACTGAAGCCAGTCGGCACAAAAAAAACCACGATATGGATAGTGAAACTTTTCCTGCTTAAAACGAGTTGGCTCTCCGTTTAATGTTGCATCTGTATAAAGGACACACATCCACCTGTGGCTTCCCCTCTGTGTCAGGTAGCAAATCAAACACCCCTCGAACCCCTTCCAAGGCCTCTGTCGTTGCAATAAGTGTATTAAGATGTGTAGAGGCAcaagtgtttaaaaatgaagtatTAGTGTATCGAATATACTAAACAGAGTAGAGAGAGAGTAAACATGataagtttaataaatgtgacCTTCAGTcgtttatgctttttatttgctCTAGTATCTCTGGTGGATTCATTgttgtctgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtatgtgggATGTTGTTCTCAAATGgcacatttaaaggaatagttcagccagaAATGAACTTTTACCCATCCAaggtgtagatgagtttgtgtcTTCATCAGAGCATTCCCTCActttcctctgcagtgaatgggtgccgtcagaacgagggtccaaacagctgataatccacaccactccagtcaaCCAGTTAACAGCTCGTGGCATTTTACCTTCAAATCAAGACAGGAGATGGGCCTTTTCATGAGCGGAATTGTTGTGGATGacatatttaaagtaatgtttatAGAATGTAATGGACTCATATGCATTCTTATAGCGTTGAACAACATTCTCAGAGCGTCCTTGTAATGTAACTTACACTCGATGAACGTTTTTGTAACTTTGAAACAACGTTATAATTGTAACAAGAAAACTTGGACTTTTCTACGTTCTTAGAATATTACCATTAGACATTCAAACAACGTTACGAACatcttaagaaacatttttataaattacacaaaaaaaaagtgtttttataatcTTCAGCTGTTACCTTGATTTGGATTCGTATTTTTGGTCAAGAGTAAAAGTTCGAAGTTAAAGCTTGTGTCTTTTCCAGATCGCGATGTTTTTATCggctcgttctgacggcacccattcactgcagaggaaagtgatggaaaaatgcatttctccaaatctgacgaagaaacaaactcgtctaCATCTTAGATGGCCTAAGGGTtagaacattttcattaaaatttcattttgggctgAACTAGTGCTTTACAGACCTCATGAAATGGCTTCAaagcacattttgaaataatccCTCTGCTTTCATTTGCACAGCTGCGTTGATCTCAACTCTGCACCATTGGCCGAGTCCCACATCAAGCTAAAATATTTGAAGGAATTTTACCATTTAtacctaaaatgttttttaatgtgtgtatcttctaaaatgtttttttggtcagGTTTTATTGTAAATGAGCAGATAACGAAGCCACAAAACCTCGTCTTGAATGTCTTGCGGTCTTTGAATGTGTGTTGATTTTCGCAGTTCTCTTTCTCATCCCCGTTTCTTGGAAAATTCGCCCAGTGCAACAATCAGATGTGATGTGCAATAATGATGTGAAACAAAGCTGCACCGATTCACACTGTGATTTCAGTTCAGTCCGTGACAGACGCCGCAGCAGAGCCTCTGAAAACACAAGTGCGGCACGGACACTTTCGCTCTAATTAGAACCTTTCTTTTCCTTCAGCCATGGAGAGATTAGAGCTGTCAcattagagagtgtgtgtgcgagtgtgtgtgcgtgagtgtgtgtgcgcatgcaGGCATTTCATGAAACCCGTCAAGAACACGTCCAGGTCACGTTTCActgcaaaatcaaaagaaaacttGAATCAATTTGATTtagcataaagaaaatgaagcctaTTTTAGGATCGGTatttctgttttgcattttgacGTTGTATTTAATGTGCgcaattacaatattttttttgattattaaatgaAAGCAGCGCTAAAAGTCCTGAATATTATATAGGCTacgacaaaaaataaatatatagacagAGCACCAtacaaataagatttttttaaagaaagttctccaaggctgcatttatttgatcataaatacagaacaaattggaaatattattacaattaaaaaaataagaatatatggtaaaatgtgatttaataaaatagtcaCTATAACCTTATTGGTCAAAATTAGCATCATTTtctatatgcaatatatatacacacacatatatgttgGATTTTGGGTTAAATGCGGGCTAGACAAGTTCTtgacagttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcccacCACCCACAGAACTTAAGAGGATAGTATTCTTCATGTTAATATTATCTGCTGCTTTAAGAAGTCAGGGCACCGTTTCaaatatatatgacaaaaatgtaaaggtatatatatatatatttttgaacttAGATCTTGTATTTTTGTGTCTCTTGATGAGTCTCATTGTCAGTCCCATGGTGTATCTGTATGTCCACTCTGTGCAGACTGTGAATCTGGggtgtttttatgtttcagtGATTGGAGTTTTGAACATGTATTGTGGAGTCATTTGTCGGCCTTTTGTAGTGCATGCAAAGACCCATGGTCAAAATGTAAAGACTGCGTCTGAAGAATATGTACAGTTCAATGCAATGTGAGACAGTCGGATAAACATATTaaccttgtaaaaaaaaacaaa
>XM_043236160.1
gagagagagagagagagagagagagagagcgcgcgaGAAAGAAAGCGAGCGTGCTCTTGTTGCTCCGAAGCGCGAGCCGcaggtgatgatgatgaggatgaggatgaggatgggtCGATAGAAGGAAGAGCTACTGCTTTCTTTCACCTgtccgcgcgcgcgcgctcggcTCGTCTCGCTCGCCGCGAACAAAGCGAAGCGTTCGGCTCAACCCATCACTTCAATGAGGCTGTTCGGGAACTATTGGAGTACTCCAGCTTCGCCACAGCAGCACCGTAGAGTAACGTTACTCCCCTCGCGTCATGTCTCACTCTGAGAGATGGGCAAGTTCGACGAGCACGAGAGGGTGATCCTCAACGTCGGGGGCACGAGGCACGAAACCTACCGGACCACGTTAAAGACCCTGCCGGGCACGCGCTTGGCCCTGCTCGCCTCCGAGTCGGACCTCGAGTCGGTTCTGGGCCAGCTGCAACAAGTCCCGGGCTTCATCGAGTACAACGCGCGCAGCAACGAGTATTTCTTTGACCGGCACCCAGGCGTCTTTGCCTACGTGCTCAACTATTACCGGACAGGTAAGCTGCACTGCCCGGCGGACGTGTGCGGACCTCTGTTCGAGGAGGAGCTGTCCTTCTGGGGCATCGATGAGACGGACGTGGAGCCGTGCTGCTGGATGACCTACCGACAGCACCGGGATGCCGAGGAGGCGCTCGAGGTGTTCGAGATGAACGTGGACAACGATGAGGACGACGAGTACGGCAAGCGGCTGGGCATCGAGGACGTGGTGTCCGCGGACGGTACCGGCAGCAGGTGGAGGAAGTGGCAGCCGGTCATCTGGAACCTGTTCGAGGACCCGTACTCCTCCAGAGCCGCTCGGTTCATCGCTTTCGCCTCCCTGTTCTTCATCCTGGTCTCCATAACCACCTTCTGCTTGGAGACGCACGAGGCCTTCAACACGGTCATCAACAAGACGGACTCCTTCCGCAACGACTCGTTCACGGACTTCAGCCAGCAGTACGAGATCGAGACGGACCCGGCGCTCACCTACGTGGAGGGCGTCTGCGTGCTGTGGTTCACCTTTGAGTTCCTGGTGCGCGTCACCTTCAGCCCGGACAAGCTGGAGTTCGTCAAGAGCATCCTGAACATCATAGACTTCGTGGCCATTCTGCCCTTTTACCTGGAGGTGGGCTTGAGCGGGCTCTCCTCCAAAGCCGCCAAAGACGTCCTGGGCTTCTTGCGCGTGGTCCGCTTCGTGCGTATCTTGAGGATCTTCAAGCTGACGCGGCACTTCGTGGGCCTGCGCGTGTTGGGACACACCCTGCGGGCGAGCACCAACGAGTTCCTGCTGCTCATCATCTTCCTCGCGCTGGGCGTCCTCATCTTCGCCACCATGATCTACTACGCCGAGCGGATCGGGGCCAGCCCCAACGACCCGACGGCCAGCCACCACACCATGTTCAAGAACATCCCCATCGGCTTCTGGTGGGCCGTGGTCACCATGACCACTCTGGGCTACGGAGACATGTACCCTCAGACGTGGTCGGGCATGGTGGTGGGCGCGCTCTGCGCCCTCGCCGGAGTCCTGACCATAGCTATGCCCGTGCCCGTCATCGTCAACAACTTCGGCATGTACTACTCGCTCGCCATGGCCAAGCAGAAGCTGCCTAAGAAGAGGAAGAAGCACATCCCTCAGGCGGTGCAGACCGGATCGCCGTCCTACTGCAAGACGGACCTGAGCACGGCCTGCAACAGCACTCAGGGCGAGCTGTGTTTGGGTCAGAGCCGAGGACTGGAGCGCCACCGCTCAGTGCTGTCTGCCGACTGCAGcgcaggaagtgacatcaccaTGTCTCCGGAGGAGCGGATCCCGATGCGACTGTCCAGCGCTCGAGAACAGGACCGTCACACCGAAGGCACCTGCTTCCTGCTGGCCGCCAGCGACTACACCTGCTCGGCAGACGCAGCCATCCGCAAAACAGATAACTGCTCAGAGGTTGTGTTCACGAGGCTCAGGCGAGCAGAGGCGAACGCTCTGTCTTAAAGGGAGACGAGGCTTGCGAGACTCACAGCTACTGTATCACCTCTGGCTGACGTACAGTTTATATCGGCCAGAGACGGGGAAGGCGGGGCCAGCAGAGACTCAGATGGATTTGATGAATTGGATTGGACGGTCTGGAATAGAATAAGCC
>XM_043236161.1
gagagagagagagagagagagagagagagcgcgcgaGAAAGAAAGCGAGCGTGCTCTTGTTGCTCCGAAGCGCGAGCCGcaggtgatgatgatgaggatgaggatgaggatgggtCGATAGAAGGAAGAGCTACTGCTTTCTTTCACCTgtccgcgcgcgcgcgctcggcTCGTCTCGCTCGCCGCGAACAAAGCGAAGCGTTCGGCTCAACCCATCACTTCAATGAGGCTGTTCGGGAACTATTGGAGTACTCCAGCTTCGCCACAGCAGCACCGTAGAGTAACGTTACTCCCCTCGCGTCATGTCTCACTCTGAGAGATGGGCAAGTTCGACGAGCACGAGAGGGTGATCCTCAACGTCGGGGGCACGAGGCACGAAACCTACCGGACCACGTTAAAGACCCTGCCGGGCACGCGCTTGGCCCTGCTCGCCTCCGAGTCGGACCTCGAGTCGGTTCTGGGCCAGCTGCAACAAGTCCCGGGCTTCATCGAGTACAACGCGCGCAGCAACGAGTATTTCTTTGACCGGCACCCAGGCGTCTTTGCCTACGTGCTCAACTATTACCGGACAGGTAAGCTGCACTGCCCGGCGGACGTGTGCGGACCTCTGTTCGAGGAGGAGCTGTCCTTCTGGGGCATCGATGAGACGGACGTGGAGCCGTGCTGCTGGATGACCTACCGACAGCACCGGGATGCCGAGGAGGCGCTCGAGGTGTTCGAGATGAACGTGGACAACGATGAGGACGACGAGTACGGCAAGCGGCTGGGCATCGAGGACGTGGTGTCCGCGGACGGTACCGGCAGCAGGTGGAGGAAGTGGCAGCCGGTCATCTGGAACCTGTTCGAGGACCCGTACTCCTCCAGAGCCGCTCGGTTCATCGCTTTCGCCTCCCTGTTCTTCATCCTGGTCTCCATAACCACCTTCTGCTTGGAGACGCACGAGGCCTTCAACACGGTCATCAACAAGACGGACTCCTTCCGCAACGACTCGTTCACGGACTTCAGCCAGCAGTACGAGATCGAGACGGACCCGGCGCTCACCTACGTGGAGGGCGTCTGCGTGCTGTGGTTCACCTTTGAGTTCCTGGTGCGCGTCACCTTCAGCCCGGACAAGCTGGAGTTCGTCAAGAGCATCCTGAACATCATAGACTTCGTGGCCATTCTGCCCTTTTACCTGGAGGTGGGCTTGAGCGGGCTCTCCTCCAAAGCCGCCAAAGACGTCCTGGGCTTCTTGCGCGTGGTCCGCTTCGTGCGTATCTTGAGGATCTTCAAGCTGACGCGGCACTTCGTGGGCCTGCGCGTGTTGGGACACACCCTGCGGGCGAGCACCAACGAGTTCCTGCTGCTCATCATCTTCCTCGCGCTGGGCGTCCTCATCTTCGCCACCATGATCTACTACGCCGAGCGGATCGGGGCCAGCCCCAACGACCCGACGGCCAGCCACCACACCATGTTCAAGAACATCCCCATCGGCTTCTGGTGGGCCGTGGTCACCATGACCACTCTGGGCTACGGAGACATGTACCCTCAGACGTGGTCGGGCATGGTGGTGGGCGCGCTCTGCGCCCTCGCCGGAGTCCTGACCATAGCTATGCCCGTGCCCGTCATCGTCAACAACTTCGGCATGTACTACTCGCTCGCCATGGCCAAGCAGAAGCTGCCTAAGAAGAGGAAGAAGCACATCCCTCAGGCGGTGCAGACCGGATCGCCGTCCTACTGCAAGACGGACCTGAGCACGGCCTGCAACAGCACTCAGGGCGAGCTGTGTTTGGGTCAGAGCCGAGGACTGGAGCGCCACCGCTCAGTGCTGTCTGCCGACTGCAGcgcaggaagtgacatcaccaTGTCTCCGGAGGAGCGGATCCCGATGCGACTGTCCAGCGCTCGAGAACAGGACCGTCACACCGAAGGCACCTGCTTCCTGCTGGCCGCCAGCGACTACACCTGCTCGGCAGACGCAGCCATCCGCAAAACAGGTTTTGACAGCGTCTCTCTCCAGTGACCTCTCCCTACAGCTCCCCTGCCAAGGCCACGCCCCACTCTCAGTGACCCCGCCTTCTGTGGGCGGGATAGAGCCATTATGATGTACTGTACATAACTATATATAGAGTGATATGGTGAAGTTTGTAAAGAAAGTATTGTAAAGAAATACTGAGGTAAATCTCACAAAATTGTTATagagaaatatattttgcttaatGAAAATTGAGCTTAGTTTTGCATTGTGACATttcaattaaacacatttaatttaaaa

Function

symbol description
kcnc2 Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in axon; dendrite membrane; and neuronal cell body membrane. Predicted to be integral component of membrane. Orthologous to human KCNC2 (potassium voltage-gated channel subfamily C member 2).

NR:

description
PREDICTED: potassium voltage-gated channel subfamily C member 2 isoform X1

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005251 delayed rectifier potassium channel activity molecular_function

KEGG:

id description
K04888 KCNC2, KV3.2; potassium voltage-gated channel Shaw-related subfamily C member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236159.1 True 4893 mRNA 0.47 4 136003 171334
XM_043236160.1 False 2186 mRNA 0.60 5 138800 171334
XM_043236161.1 False 2257 mRNA 0.58 4 141594 171334

Neighbor

gene id symbol gene type direction distance location
cpsf6 cpsf6,LOC107729149,LOC108279496,LOC107555887,LOC107708007 coding downstream 49393 75381 ~ 86610 (-)
ccdc107 ccdc107,si:ch73-278m9.1,LOC107656458,LOC107729159,LOC107555866 coding upstream 5939 177273 ~ 184430 (-)
krr1 krr1 coding upstream 28477 199811 ~ 205364 (-)
phlda1 phlda1,LOC107708012,LOC107658781,LOC107656271,LOC107729151 coding upstream 78807 250141 ~ 252421 (-)
nap1l1 nap1l1,LOC107656454,LOC107555881,LOC107658961 coding upstream 81932 253266 ~ 267765 (-)
csrp2 csrp2,LOC107708016,LOC107658959,LOC107656449 coding upstream 188833 360167 ~ 369423 (-)
G24713 NA non-coding upstream 20062 191396 ~ 194159 (-)
G24712 NA non-coding upstream 34559 205893 ~ 208820 (-)
G24724 LOC107555883,LOC107708011,LOC107658963 non-coding upstream 41271 212605 ~ 213246 (-)
G24792 NA non-coding upstream 433549 604883 ~ 605114 (-)
G24795 NA non-coding upstream 441057 612391 ~ 612843 (-)
si:dkey-97m3.1 NA other downstream 62322 47610 ~ 73681 (-)
LOC122343420 wasla,LOC107753630,LOC107598884,LOC107659464,LOC107725914,LOC107658745,LOC107656407,LOC107698525,LOC107752346,LOC107575727 other downstream 102076 19991 ~ 33927 (-)
G24689 asb15b,LOC107726003,LOC107658939,LOC107583946,LOC107656400,LOC107711503 other downstream 124902 10833 ~ 11101 (-)
G24708 NA other upstream 15126 186460 ~ 191242 (-)
osbpl8 osbpl8,LOC107555879,LOC107656451 other upstream 108664 279998 ~ 341953 (-)
slco1c1 slco1c1,LOC107708018,LOC107583931,LOC107658953,LOC107729145,LOC107656392,LOC107590530,LOC108435080 other upstream 235308 406642 ~ 496868 (-)
pik3cg pik3cg,LOC107658948,LOC107656384,LOC107583938,LOC107705338,LOC107590535,LOC107584052 other upstream 693350 864684 ~ 933108 (-)
G24875 NA other upstream 897826 1069160 ~ 1070096 (-)

Expression


Co-expression Network