LOC122342399 (LOC107584032,LOC107579834,LOC107656234,LOC107711464,LOC107725908)


Basic Information

Item Value
gene id LOC122342399
gene name LOC107584032,LOC107579834,LOC107656234,LOC107711464,LOC107725908
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3528035 ~ 3531141 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236170.1
TTAAACTTGTGAATGGCTCTAACTCTTGTTCTGGACGAGTTGAAGTTTTTTTTGATGACCGGTGGGGAACAGTATGTGATAATGGCTGGGATCCATCAGACGCTGCAGTAGTGTGTAAAGAACTTGGCTGTGGGGATGCTATACAAGCAAAGAGTGGTGCTTATTTTGGACAAGGATCTGGACCTGTATGGCTAAGTAATGTACAGTGTGGCAGTTCCTCTACTCTAAGAAACTGCAATTCCCTGGGATGGGGACAGAGCGACTGTGGACATGAGAAGGATGCTGGAGTCACCTGTCAACGTGAGTACAAAATCTTGCACACAAAATCAACATAATTAACTGTATATTGTTCACTTGTAACACACATGTTTTTGTGGCCATTAGTTAACATCAGATTGGTGAATGGCATCACCTCTTGTTCTGGACGAGTGGAGGTTTTTCTTTACAGTCAGTGGTTAACAGTGTTTGATGATGGCTGGGGTCTAACAGATGCTGCAGTTGGGTGTAGACAAATGGGATGTGGAGATGCTATAGAGGCAAAAGGTGGTGCATACTTTGGACAAGGTGTCGGACAAATATTTGGTATAAACTGTTTTGGAAATGAGACCATGCTTATTGATTGTGAATTACTTAAAACGGAAATTAATGACCATTCAAGGGATGCCGGAGTCATCTGTGACCCTTCTCTCAGGCTCATCAATGGACATAACTCTTGTTCTGGACGAGTGGAGGTTCTTTATAATGGAACATGGGGAACAGTGTGTGATAATAACTGGGATCTAACAGACGCTGCAGTGGTGTGTAGAGAGATGGGCTGTGGAGATGTGATCGAGGCCAAGAGCGCTGCTTATTTCGGTCAGGGATCAGGACCTGTATGGATTAGTGATTTACAATGTTCTAACACTGATTCAAGACTAAGAGAGTGTGAATCAAGTGGATGGGGAAGAGTCAGCTGTGGACATGACAAAGATGCAGGAGTCATCTGTAAGGATAACGTTAGGCTGGTCAACAGCACCAACCCCTGTTCTGGACGAGTTGAAGTTTTTCGTGCCGGTCAGTGGGGAACAGTGTGTGATGATGCCTGGGATGCATTAGATGCAGCAGTGGTTTGTACACAACTGGGCTGTGGGAACGTTTTAGAAGTAAAGAGTGCTGCCTACTTTGGAAAGGGCACAGGAACAGTTTGGATGAATAATGTAAACTGTTTTGGGAGTGAGCCTGCATTGATGAGCTGTTCACATAATGCAACTCCAAACAGATGTGGCCATGAGAACGATGCTGGAGTCATTTGTGGATCTGTTAAATTCATGTTGAGGGTGGAAGTGAAGGCTAACCTTCAAGTCAACCCAAATTCAGCTGGAATCTTAAATAAACTTTCAGAGGAGATTAGGAAGAGGCTGCATATTAATGAGACTTTCTCACTGAGAACTCAGGACGATGGAAAAATCTTTCATAAGAGAACAGGAGCTGCACCATAACAAATTGGTCATTTCTGGAAAAAGGAGgagaaaacaagcaaacactAGGGCATTGAGTGCTACATTTTGagtgaaattaataattatctTGCATATATTTCcacatacaataatattttatgtatccATGTAGTTGATGATGAAGTATCATTGTGTCACATTCTAActtgctaaatataaatgtaatatatattgtaaaatataacttGATATAGccaatattgtatatataaacttGTCTGaggctaaataaatgaatatataatagcAATATGTTTAATGGTAATTTCAATGAACGCAAATCCATTtgcttaatttatataattgcataataaacatgaataatgtGTGATTAAACAATTATGTTTCTGGATGTTGTAGTCTTTCTGGTCCCAATTAtcttgttttacagaaa
>XM_043236171.1
TTAAACTTGTGAATGGCTCTAACTCTTGTTCTGGACGAGTTGAAGTTTTTTTTGATGACCGGTGGGGAACAGTATGTGATAATGGCTGGGATCCATCAGACGCTGCAGTAGTGTGTAAAGAACTTGGCTGTGGGGATGCTATACAAGCAAAGAGTGGTGCTTATTTTGGACAAGGATCTGGACCTGTATGGCTAAGTAATGTACAGTGTGGCAGTTCCTCTACTCTAAGAAACTGCAATTCCCTGGGATGGGGACAGAGCGACTGTGGACATGAGAAGGATGCTGGAGTCACCTGTCAACTTAACATCAGATTGGTGAATGGCATCACCTCTTGTTCTGGACGAGTGGAGGTTTTTCTTTACAGTCAGTGGTTAACAGTGTTTGATGATGGCTGGGGTCTAACAGATGCTGCAGTTGGGTGTAGACAAATGGGATGTGGAGATGCTATAGAGGCAAAAGGTGGTGCATACTTTGGACAAGGTGTCGGACAAATATTTGGTATAAACTGTTTTGGAAATGAGACCATGCTTATTGATTGTGAATTACTTAAAACGGAAATTAATGACCATTCAAGGGATGCCGGAGTCATCTGTGACCCTTCTCTCAGGCTCATCAATGGACATAACTCTTGTTCTGGACGAGTGGAGGTTCTTTATAATGGAACATGGGGAACAGTGTGTGATAATAACTGGGATCTAACAGACGCTGCAGTGGTGTGTAGAGAGATGGGCTGTGGAGATGTGATCGAGGCCAAGAGCGCTGCTTATTTCGGTCAGGGATCAGGACCTGTATGGATTAGTGATTTACAATGTTCTAACACTGATTCAAGACTAAGAGAGTGTGAATCAAGTGGATGGGGAAGAGTCAGCTGTGGACATGACAAAGATGCAGGAGTCATCTGTAAGGATAACGTTAGGCTGGTCAACAGCACCAACCCCTGTTCTGGACGAGTTGAAGTTTTTCGTGCCGGTCAGTGGGGAACAGTGTGTGATGATGCCTGGGATGCATTAGATGCAGCAGTGGTTTGTACACAACTGGGCTGTGGGAACGTTTTAGAAGTAAAGAGTGCTGCCTACTTTGGAAAGGGCACAGGAACAGTTTGGATGAATAATGTAAACTGTTTTGGGAGTGAGCCTGCATTGATGAGCTGTTCACATAATGCAACTCCAAACAGATGTGGCCATGAGAACGATGCTGGAGTCATTTGTGGATCTGTTAAATTCATGTTGAGGGTGGAAGTGAAGGCTAACCTTCAAGTCAACCCAAATTCAGCTGGAATCTTAAATAAACTTTCAGAGGAGATTAGGAAGAGGCTGCATATTAATGAGACTTTCTCACTGAGAACTCAGGACGATGGAAAAATCTTTCATAAGAGAACAGGAGCTGCACCATAACAAATTGGTCATTTCTGGAAAAAGGAGgagaaaacaagcaaacactAGGGCATTGAGTGCTACATTTTGagtgaaattaataattatctTGCATATATTTCcacatacaataatattttatgtatccATGTAGTTGATGATGAAGTATCATTGTGTCACATTCTAActtgctaaatataaatgtaatatatattgtaaaatataacttGATATAGccaatattgtatatataaacttGTCTGaggctaaataaatgaatatataatagcAATATGTTTAATGGTAATTTCAATGAACGCAAATCCATTtgcttaatttatataattgcataataaacatgaataatgtGTGATTAAACAATTATGTTTCTGGATGTTGTAGTCTTTCTGGTCCCAATTAtcttgttttacagaaa

Function

NR:

description
PREDICTED: putative DMBT1-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236170.1 True 1893 mRNA 0.40 6 3528035 3531141
XM_043236171.1 False 1809 mRNA 0.40 7 3528035 3531141

Neighbor

gene id symbol gene type direction distance location
LOC122342400 NA coding downstream 1722 3521694 ~ 3526313 (-)
LOC122342398 LOC107584038,LOC107725905,LOC107658738 coding downstream 7107 3518689 ~ 3520928 (-)
LOC122342755 LOC107676321,LOC107716109,LOC107709941,LOC107655767 coding downstream 125694 3400380 ~ 3402341 (-)
LOC122342759 fbxl14b,fbxl14,LOC107580311,LOC107656333,LOC108279751 coding downstream 171894 3354369 ~ 3356141 (-)
wnk1b wnk1,LOC107725976,LOC107658853 coding downstream 433630 3027071 ~ 3094405 (-)
LOC122342818 NA coding upstream 73 3531214 ~ 3532749 (-)
LOC122343407 NA coding upstream 181474 3712615 ~ 3721125 (-)
ttll12 ttll12,LOC107581273 coding upstream 194035 3725176 ~ 3751393 (-)
pnpla3 pnpla3,LOC107726050,LOC107743702,LOC107656255,LOC107592239,LOC107580453,LOC108428138,LOC107658728 coding upstream 221226 3752367 ~ 3759739 (-)
mpped1 mpped1,LOC107726058,LOC107658834,LOC107592234,LOC107656320 coding upstream 262798 3793939 ~ 3825403 (-)
LOC122342503 NA non-coding downstream 83144 3442422 ~ 3444891 (-)
LOC122342757 NA non-coding downstream 110118 3416587 ~ 3417917 (-)
LOC122342758 NA non-coding downstream 124533 3402824 ~ 3403502 (-)
LOC122342458 NA non-coding downstream 408485 3117479 ~ 3119550 (-)
LOC122342459 NA non-coding downstream 410738 3116404 ~ 3117297 (-)
G25706 NA non-coding upstream 115922 3647063 ~ 3701306 (-)
G25731 NA non-coding upstream 176448 3707589 ~ 3707894 (-)
G25732 NA non-coding upstream 178883 3710024 ~ 3741805 (-)
G25739 NA non-coding upstream 238980 3770121 ~ 3770329 (-)
LOC122342502 NA non-coding upstream 244299 3775440 ~ 3785720 (-)
LOC122342805 NA other downstream 506523 3019092 ~ 3021512 (-)
ccdc3a ccdc3,ccdc3a,LOC107725961,LOC107658768,LOC107580337,LOC107744050 other downstream 515821 2999882 ~ 3012214 (-)
LOC122342907 NA other downstream 1054967 2472284 ~ 2473068 (-)
dock4b dock4b,LOC107656358,LOC108425388 other downstream 1152319 2299635 ~ 2375716 (-)
tnni4a zgc:101560,LOC107725970,LOC107584059,LOC107658770,LOC107656258,LOC107581287 other downstream 1430234 2091351 ~ 2097801 (-)
LOC122342819 foxp2,foxp4,LOC107725896,LOC107728618,LOC107656011,LOC107675840 other upstream 3521 3534662 ~ 3577123 (-)
LOC122342822 tmem9b,LOC107674442,LOC107750540,LOC107754675,LOC107585953,LOC107700603,LOC107593285 other upstream 69859 3601000 ~ 3601991 (-)
LOC122342823 scube2,LOC107750541,LOC107585952,LOC107674429,LOC107593229,LOC107700597 other upstream 71215 3602356 ~ 3618367 (-)
shank3b shank3b,LOC107725995,LOC107592218,LOC107656300,LOC107580703,LOC107743477 other upstream 602836 4133977 ~ 4161828 (-)
G25880 LOC107658814,LOC107726023,LOC107592209 other upstream 733785 4264926 ~ 4267495 (-)

Expression


Co-expression Network