ntf3 (LOC107658772,LOC107584056,LOC107725959,LOC107656423,LOC107579734,LOC107711475)


Basic Information

Item Value
gene id ntf3
gene name LOC107658772,LOC107584056,LOC107725959,LOC107656423,LOC107579734,LOC107711475
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1504044 ~ 1519640 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236173.1
tgcgCGCTGTACTCGCCATTAAGACTCTGAGCACGCAACGCGCGCTTTCTATCTGGAAACTTTCAAAAAGGATTCGTTTTAAACTCATCACCTTCATGTCGGCACTGCTGAATATTTCCTCACCGATGCTATGGTTACCTTTATTACGATCTTACAGGTGAATCTAGTGATGTCCATCTTGCTGTACGTGATGTTTCTCGCGTACCTCTATGGTATCTCAGCCTCTACGATGGACAAGCAGCGGCCCACCCAGGACCCCATCAACACACTTATCATAAAGCTCCTTCAGGCCGACATCAGCCGTAGCCGACAGAAGCAGGGTGATGTGCTCCCTTCATCCACCTTAAACCCACCCGCAGTAACCGACTACAAGGAAAACGTCAGTGACCGGCCCGTGACAGACATCTCCACAGAGCTTCTGCGTCAGCACAAACGTTATAACTCGCCTCGCGTGCTTCTCAGCGACCGACCTCCTCTGCAACCGCCACCGCTCTACCTCATGGACGACTTCGTCAGCAGCCAGGACGGCAGTGGCACCAACAAGACGCGGCAAAAACGCAACACCGAGCACAAGAGTTACAGGGGCGAGTTTTCAGTGTGTGACAGCATCAGCCTGTGGGTAACGGACAGGACCACAGCTGTGGACATTAAGGGGCAGGTGGTCAAGATTTTGGGGTCTGTCAATGCAGGACGCACGAACATCAAGCAGTACTTTTACGAGACGAGATGTGACACCGGCAAGTCCCAGAAAGGCAGCTGTCGGGGCATTGACGAGAAGCACTGGAACTCGCAGTGCAAAACCTCGCAGACTTTTGTGCGTGCTCTCACTCAGGATGCATCATCGGTGGGATGGCGCTGGATACGTATAGACACCTCGTGCGTCTGTGCACTTTCGCGCAAACACCGCAGGACGTGAAAAACACTACAGTGACTTTTTTATGTTCCCTGGTGGggctgtaaatatataaattattacttAAGTTATATGGAATGCATATAGTTTATACATGTCTATGTATACGGTATAAATATacgtgttatttatttaatttttttgcaaggaaaaatcgaaaaaaaaaaagtaaaaatacttgcGTTAACATGCAATGCCATTAAGCTACAGGAGCATTGCATGCTAAATTGTGCCTTGCTCACGTATCAGAGTCAGAGGACATGTCACTCCACTAGACCTAGACCTTGGGAACAGTTGCAATGGAAAACATAGATCACTCAATATCATATTAACTTCAGTATTGTTCATGAAAACCAGTTTTTCTACTGAAACGGGCTGCCAGTATATCCTCTTTGTGTCTGGGAAAACAAATCACAGTTGGGATGTTGTTGTATTTTGTACGGAACgtttaaacatacagtatatgtgtatcaaaactgcatgaaatacctaagaaatatatatttttctaagcACTCCTGTTAGTGGTTTAAAAATGCAGAGAGTCAGTCCTAGAATAACCAAAAAGTGACTGTTTAGTGTTCCACAATCTGGGCAGTATTTTGATTCTAGATGGCCTCCTGAAAGAGTTTAACATCATTTTAGAAATTGCCTTTAGCGCATTCCAACATAGCCGCAATAAAGCAGGAACGACAGCAACCAAGTATTAACTttgatgaaataatgaaaattatagCTCAGTAGCCCTGAAGAAGCTTCTCAGCAAATGGTGGAGCAAAGACTCCTCCCACTATCCATGCCAGTAGCCATCTTTTCTGAAACCCTGCCCAGCCTACCAGAAACCACCAGAAATAAGCTTACTGCACTTTTAGTCTCTTTTCGATCATCTGCCATGATCAGTAGCAACTTGACCACCTTAACGAGCAAAGCAGCACGCATAAGAGcagcatgtaaacaaaatgGGCCGTCGCTAATGACACTGTAGTCTTACACAGAGGTAAAGCTGCCTTAAGACGATGTGCATACGTACAGAGCTGGGATTTGAACACGTAATCTCCCCCTTAAGAGGGTTTCCCTCTTGTCAGACTCATCTTAGGAGATAAGCATTTCGCCGGTGCGCTACGGCTAAAAAAAGGCCTGCTGTATTTTCCCGCTGTACGTTTATATAAAGAGACTTGCTCAGTTGCTAGACACTAAGGTCAAGAGATTTCAGTAAGATATGTGATATGCAATGACTGACACAAAATGTGTTGGCCTCTACAAAAAATTAACATGTTTTGTACTCCttcacattaaatatgataCACCCATGACAACACGTTTGTCAGCAAAGCATATAGGCAGCCTTTGCGTTCATTTGTAGAGCATTTTAAAAGGCAAGGCAGTTGCGGCTGGGCGGTTGTTCAGGCTTATCTTTTGTTATGCATAACCCAGGTCACCTCTGATTGAACAAGTCATCCAAGTGTCCacaagaatgaaaaatatacCACCTACGTATCATATTTACCTTTGTAGCAGCATATAAAACTTGCAGGATAAGCCAGGATGGGGTCCAAACCCATTACTACATCGAATGAAGTGCCAATACTTCGTCCTCCAAGGTCCGAACATAAAGCTTTATTAGCATGAAATCGTATTATAATGAGGCTATAAAAAGAACagtataaaaaattgttttattgctttttaatgcTTCACGGTTTGTTGGATAAAGgcacttttaaacattttttttgtggtggaCGACTCTGTTCATGACCTGATATACTTGTATTGGATTAGAGGTTGTGAAACAGAGAAACGGCTCAGATTCGAAACAGAACTGCAGACCACCAAGGATACAACACACCTTTTTCAATCTCTGATTACGTCCCACTTCGATATGGCCCTCTGTGGAAAAACAGGATAAAAGCTGAACACAGGAACTCCATTTTCCAAGGATGCTGTTGGGAAATGGCCCACACAGTTGTCCAAATGCATTGCCTTTCCTGTAACACACATTATTACACTGGAACATGAGGATCCCTAAATGATTATGACTTCTTGGATGACATTCACTGAAACATTCCCGTGTATTTTATGCTGTCTGGAAAAGCCCTGCTGGTGTAATGCATACTGTGTAGGATTCTTGCTGCTTTAAACCACTACAACTGACCTTATAATGGACCAATGGCCATTGCTGAAACCCAAGGACAAGGAAACTTTTATGATGAAACAAAACTGTGCCAAAACACACCACACTCTATGTAAGGACtacatgctttttaataatattcagaCAAGAAAGTTATCTCTGGtatgacaaaaaattaaaaaaattgcaaggCAAATCCCTATTTTAGTAAAGAAGAAAGACTTGTTTGCTTGATGGTCATTGTTTAGTGAAGTAGTTTGTTTTGGCTGTACCCATAACccattgtttgtatttttttttaattttctttttttttttttgaaagagagACAT

Function

NR:

description
PREDICTED: neurotrophin-3

GO:

id name namespace
GO:0043069 negative regulation of programmed cell death biological_process
GO:0007422 peripheral nervous system development biological_process
GO:0005165 neurotrophin receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04356 NTF3; neurotrophin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236173.1 True 3380 mRNA 0.42 2 1504044 1519640

Neighbor

gene id symbol gene type direction distance location
tbc1d30 tbc1d30,LOC107658925,LOC107725910,LOC107584031 coding upstream 17367 1473753 ~ 1486677 (+)
zgc:194209 zgc:194209,LOC107584030,LOC107658744,LOC107725912 coding upstream 35567 1463584 ~ 1468477 (+)
rassf3 rassf3,LOC107711494,LOC107656425,LOC107658927 coding upstream 40808 1430618 ~ 1463236 (+)
LOC122342464 LOC107658928 coding upstream 74618 1424627 ~ 1429426 (+)
dgki dgki,LOC107658929,LOC107656386 coding upstream 78228 1386513 ~ 1425816 (+)
LOC122342591 LOC107579910,LOC107711477,LOC107656438,LOC107584057,LOC107658998,LOC107725909 coding downstream 1980 1521620 ~ 1526208 (+)
cd9b LOC107658922,LOC107725937,LOC107583958,LOC107656430,LOC107711492 coding downstream 48624 1568264 ~ 1575414 (+)
si:dkey-14d8.1 si:dkey-14d8.1,LOC107658880,LOC107725921,LOC107579331,LOC107583961,LOC107656391 coding downstream 85149 1604789 ~ 1609142 (+)
LOC122342485 osgep,LOC107656414,LOC107583976,LOC107579596,LOC107658895 coding downstream 102439 1622079 ~ 1624891 (+)
si:ch211-214j24.15 LOC107658740,LOC107725906,LOC107584035 coding downstream 109953 1629593 ~ 1634607 (+)
G24925 NA non-coding upstream 216971 1286612 ~ 1287073 (+)
LOC122342413 NA non-coding upstream 376664 1112895 ~ 1127380 (+)
G24811 NA non-coding upstream 570933 864840 ~ 933111 (+)
G24768 LOC107718544,LOC107658747,LOC107590532 non-coding upstream 852451 649509 ~ 651593 (+)
G24758 NA non-coding upstream 878819 623251 ~ 625225 (+)
G24968 LOC107583957,LOC107656385,LOC107579307,LOC107711491 non-coding downstream 36752 1556392 ~ 1557778 (+)
G25071 NA non-coding downstream 169338 1688978 ~ 1693389 (+)
G25030 NA non-coding downstream 268991 1788631 ~ 1789276 (+)
G25086 NA non-coding downstream 311038 1830678 ~ 1830968 (+)
LOC122342405 NA non-coding downstream 380256 1899896 ~ 1901886 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 172201 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 212820 1288297 ~ 1291224 (+)
LOC122342481 LOC107584054,LOC107658775,LOC107725972,LOC107711476,LOC107581286,LOC107656415,LOC107725915 other upstream 254875 1245578 ~ 1249169 (+)
G24771 plekha5,LOC107584023,LOC107658747 other upstream 838514 654092 ~ 665530 (+)
gpr22a gpr22a,LOC107658958,LOC107583929,LOC107729153,LOC107708019,LOC107590528,LOC107656448 other upstream 1064692 434343 ~ 439352 (+)
LOC122343488 NA other downstream 150872 1670512 ~ 1672959 (+)
LOC122342451 NA other downstream 264597 1784237 ~ 1788096 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other downstream 474600 1994240 ~ 1995536 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other downstream 1580097 3099737 ~ 3117994 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 1599875 3119515 ~ 3306758 (+)

Expression


Co-expression Network