LOC122342408


Basic Information

Item Value
gene id LOC122342408
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24743848 ~ 24767552 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236178.1
GTTGCTTTGTGAAATTTATTAACAATTCCTGCACCAGTTCTATTTGCATTCATCTAAAAATGAGTCTGAAATAGTGTTCTAAAGTAGTGTCGTTTCTTCCTTTTTAATATTGAACTGAGTTGGAACTTGTTTAATTTTGAAACTTACTGAATAGATTCTGTCTTTTACAGCCTCATTCTCAGTGTGTCTACACACTTTACATTTTTCCCGGCCTAGATCTAAAACTACACAACGTTACATTTTTCAGGACTACATGCAGAACGTCCACGGTAAAGAAATCGACTTGCTGCGGACGACGGTGAAGGTGCCTGGGAAGAGAGCGCCCAGAGCGGTGGCGACGGTCGCCCCTACAGCCAGCCCCAAAACCAACGGACTGACCAAAGACCGCAGCACTTTACAACTCGGCATCGGGGCCACAACCCTCTGTAATCTGGAACAAAtgccgagccacctcagctggcctctctcgatgtggaggagcagcggatCTACTCCAAGCTTCTTCAGAGTGACCGAGCTCCTCACCCTGTTTCTAAAGGAgcacccagccaccctacggaggaaactcattttggcCACTTGTGTccaggatctcatcctttcggtcatgactcCAAAAAGGCCGAGTACTCTATattgccattcggcccgtaggcacaaatgacagtgagagacctccccccaacccgaaggtgcagggaggcgacccaccggggtaaactccaacacatggcggctaagctgtgggggctatgagcaagcccacaccagtccgctgcctctcactgcgggcaacactagagtagtgaagagtcccgctcctttcgaggagatgggttccagagctcAAGCTGCACATGGAGTTGAGCCGAAtatctctagccggtacctCTCCACCTCCCGCAGCAACTCCAGATCCTTCCccccagagatgtgacattccATGTCCgtaaaaccagattctgtgtccaggggcCGGGTTGCCGAAGTCCCCGCCTTTGGCTGCcgctcctgcaggtggtgggcccacagGAGTAAAGTGAAATAGTgtcttatacatttttaaaaggtctattaattaaatgtgtagttGTTTCACAAAACTCTAGAAGGTGCAGATTAATGTGTTCTTAACATTACATAACAGCTTTAAATGACTTGGCATAAGCTGATTGGTCGATGATGCGTATGTAAACAATGACCTTGTTGCTTTCACTCGAGTGACTTTCTCTGTATGATGATAAAGAATAAGCGTCAGTGTTTTTTGCTAACATGCTGTAAAGAGTAGTTTTAGAGTCGACACATGATATTATCGTCAATCAGCACAACCCTAGTGTGGTGTCCAGTTTATCTTTAAAATTTTAACCTAAAATACCGGCTTCCAGCAACGGCCGTATGCACCTTCATGAGAGCATTGAGTTAAGGCTTCTTGATTTAgattataaattcagtttttaggtGATCTATTTCTTTGTGATGAAGCAAGTAGGTTGTATTTCCAGAATTTTTTCTGAAGGACATCCCCTACACATGGGCTCTGAAATCTGGATGAGCTTTTATATTTACTGCCATGCTTACTCCATTAGCTGTTTCCATCAACCTATTTTTATGagcataaaaactatatattttgtatgtatattgcataaaaacactGGACGTAGATGCCAAAATGTGCAGAAATTCTAaagatttgtataaaaaaaaactatgcgcTCAAAGTAGGACAAATTTCTCATCCAGCaagaaaacatgcacaaaatacGATAGAAacacttgaataaaaaaaaacatgctccaAACAACTCTTTAACTTCTTggatagaaaaaaatgttttatctatccattttcttctgct
>XM_043236179.1
GTTGCTTTGTGAAATTTATTAACAATTCCTGCACCAGTTCTATTTGCATTCATCTAAAAATGAGTCTGAAATAGTGTTCTAAAGTAGTGTCGTTTCTTCCTTTTTAATATTGAACTGAGTTGGAACTTGTTTAATTTTGAAACTTACTGAATAGATTCTGTCTTTTACAGCCTCATTCTCAGTGTGTCTACACACTTTACATTTTTCCCGGCCTAGATCTAAAACTACACAACGTTACATTTTTCAGGACTACATGCAGAACGTCCACGGTAAAGAAATCGACTTGCTGCGGACGACGGTGAAGGTGCCTGGGAAGAGAGCGCCCAGAGCGGTGGCGACGGTCGCCCCTACAGCCAGCCCCAAAACCAACGGACTGACCAAAGACCGCAGCACTTTACAACTCGGCATCGGGGCCACAATCCGGGGGCTTTGGGCACCAGCAAAGAGGGCATGCACCAGCGCTCGTTCTCCGTGTCCAGCGCAGAACAGTGGAGTGAGGCCGTTATCAGCACCGCAGCAGCTCAGAGGAAAAGCACCTCACTACAGACACTTTTAATTTGAGGTTGTCATCGATGGAGGCAGTATGCACCAGTTGTACCAAACTAGTACAATAGCATGCAATGAATGCATCAgtgtatattttctatataatgtACCGCGCCAAAAGATTTGTGTTGAATATTTAGCTGTAGCTGTGTAAACTATAGCTATAGCAAGTTTAACTTTGCCCTAATAGCAAATTAAAATCCGCGATTTTACGTGATGTGTTACGACTCTGAAAGTTCAAAGATATATCAAGAGATTATGTTGCTcggaaaagagaaaaaggtcAAATTTGCCATCACTTCCTCAGCTGTTGTATTAGAAACGGCTTTAATTAGtttcaatgtaataaaacatcaaGTATAGTGtcataaatgtaatgtacagGTCAAACGTTTGAAAGCAGTGCTTTTCTACATTGACACCACAGTAAggacgctgaaaattcagctttgcatcacaggaataaattaaaatgtaaaattgattaaaataggaaacgcttattttaacttgaaataatatttcactgtatttttttagcaaattcagccttggtgagaagCAAAGGTATTCAAAATCCTTTGGCTCGTAGCGTGCATAACTGCTAGGTTAACAATGCTAATAACTGCAAGTGCTTCGTCACATTCACAGCCCACGAAAAAATGAACCGTAAACCAAATCCACCCGAGCAATAATAAATAGTTATTGTCACACACAAGCACGCATATTCAGACTTTTAGCTGTTACCCATCAGCCTCTCGGTTCCTGCGTTTACTGAGAGTATTATAGCTTTACAGATCATAATAGAGATAATAGAGTTTTACAACAGAGATCTTGGGAAAGAGCACACCTAGAGAAAACCTTGTTTGTTGGGTACAAGATtgcaggggttttttttctgttttgtcgCACATATTCATGGTTGGACATACATACTGAACTAGTTGTTCAACAGCTGACTAGTTGACTTGTGAGAAAGATGCACTgatatttaattacttattagATACTGATACGCCAGTAATTACG
>XR_006250558.1
GTTGCTTTGTGAAATTTATTAACAATTCCTGCACCAGTTCTATTTGCATTCATCTAAAAATGAGTCTGAAATAGTGTTCTAAAGTAGTGTCGTTTCTTCCTTTTTAATATTGAACTGAGTTGGAACTTGTTTAATTTTGAAACTTACTGAATAGATTCTGTCTTTTACAGCCTCATTCTCAGTGTGTCTACACACTTTACATTTTTCCCGGCCTAGATCTAAAACTACACAACGTTACATTTTTCAGGACTACATGCAGAACGTCCACGGTAAAGAAATCGACTTGCTGCGGACGACGGTGAAGGTGCCTGGGAAGAGAGCGCCCAGAGCGGTGGCGACGGTCGCCCCTACAGCCAGCCCCAAAACCAACGGACTGACCAAAGACCGCAGCACTTTACAACTCGGCATCGGGGCCACAAATTTGCAGGTGTCCTGGGACAGGTGAGGGAGTGAGCGGATGCTGGTGGAGCTGCTCAGAGAAGACATTAAActccagagagacagagaatagattatttattaaccCTTCTCTGAAGAAAAGAGTGGAAAGTCTTCTCAGAGAC

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236178.1 True 1859 mRNA 0.44 2 24743848 24767256
XM_043236179.1 False 1575 mRNA 0.40 2 24743848 24752393
XR_006250558.1 False 563 transcript 0.44 2 24743848 24767552

Neighbor

gene id symbol gene type direction distance location
LOC122342991 LOC107685875,LOC107570416,LOC107671223,LOC107749047,LOC107728228,LOC107569032 coding upstream 55868 24679922 ~ 24687980 (+)
LOC122343104 NA coding upstream 71697 24667706 ~ 24672151 (+)
LOC122343093 NA coding upstream 78272 24661829 ~ 24665576 (+)
LOC122343105 NA coding upstream 90633 24648967 ~ 24653215 (+)
LOC122342946 NA coding upstream 124457 24607037 ~ 24619391 (+)
LOC122342420 LOC107667978,LOC107563545 coding downstream 3080 24770632 ~ 24782341 (+)
zmp:0000000926 LOC107754864,LOC107661991,LOC107568831,LOC104958731 coding downstream 749844 25517396 ~ 25553833 (+)
l1camb LOC107661992,LOC107746188,LOC107598812,LOC107568828 coding downstream 805525 25573077 ~ 25609845 (+)
lsm14b lsm14b,LOC107748998,LOC107569639 coding downstream 863809 25631361 ~ 25634808 (+)
ogfr ogfr,LOC107706812,LOC107690085,LOC107713566,LOC107677637,LOC107598801 coding downstream 936279 25703831 ~ 25709637 (+)
G30877 NA non-coding upstream 28850 24714697 ~ 24714998 (+)
G30812 NA non-coding upstream 256961 24456022 ~ 24486887 (+)
LOC122343172 NA non-coding upstream 324280 24417843 ~ 24419568 (+)
G30819 NA non-coding upstream 429560 24310339 ~ 24314288 (+)
G30754 NA non-coding upstream 733957 24003642 ~ 24009891 (+)
G31223 NA non-coding downstream 221315 24988867 ~ 24989274 (+)
G31226 NA non-coding downstream 546671 25314223 ~ 25314596 (+)
G31228 NA non-coding downstream 547627 25315179 ~ 25315553 (+)
G31380 NA non-coding downstream 1019828 25787380 ~ 25787901 (+)
G31388 NA non-coding downstream 1049479 25817031 ~ 25817564 (+)
G30882 NA other upstream 15401 24721424 ~ 24728447 (+)
LOC122343086 NA other upstream 69436 24672891 ~ 24674412 (+)
LOC122343125 NA other upstream 97247 24639089 ~ 24646601 (+)
LOC122343159 NA other upstream 105194 24636352 ~ 24638654 (+)
LOC122343023 LOC107568558,LOC107685877,LOC107725785,LOC107728057 other upstream 272398 24465454 ~ 24471450 (+)
LOC122342771 ss18l1,LOC102784650 other downstream 867490 25635042 ~ 25688230 (+)
G31298 LOC107569336,LOC107690089,LOC107706811,LOC107090263,LOC107391191,LOC105928559,LOC103357353 other downstream 926250 25693802 ~ 25695381 (+)
G31384 NA other downstream 1045079 25812631 ~ 25813625 (+)
LOC122342372 LOC107752513,LOC107665166,LOC107549841,LOC107753705,LOC107575738 other downstream 2529984 27297536 ~ 27371196 (+)
LOC122342494 znf384,LOC107671195,LOC107582054 other downstream 2589260 27356812 ~ 27358163 (+)

Expression


Co-expression Network