pou3f2a (pou3f2a,LOC107726028,LOC107583975,LOC107656268,LOC107579586,LOC107710088,LOC107658894)


Basic Information

Item Value
gene id pou3f2a
gene name pou3f2a,LOC107726028,LOC107583975,LOC107656268,LOC107579586,LOC107710088,LOC107658894
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1940742 ~ 1945597 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236186.1
AGCCCATTGCGCCCTGTCACTGCTGATCCCTCTGTGCTTGTTTTCAGTGGAGCGCAATGGGATGGGGCTTCGGTGTCGACTCTACTGTGACCAATGAACGCGCCGCTGCCGCATCTGTCAAGCGCTTCCGACCAATCGACAGCGGCGCGAGGCGGATCTCAGGTGCGCGCCTCTGCGTCCTCGCGGCTCTGGCGCGCTGGGGAGCCGCCTGTGGCACAGAGTAGCTGTGGAAACTATGGCGACCGCGGCGTCCAACCACTACAGCATCCTCACGTCCAGCTCGGAGCCCGGCAGCATGCAGCagacgccgccgccgccgcaGGCCTACAGAGACGCGCACAGCCTTCTGCAGAGCGAGTACACCACCCTGCAGAGCAGCGGCAGCACGCTTGGCCATGCGCACCAGTGGCTGACGGCGGCGCTGTCTCACGGGGGAGAGGGGTCGCCGTGGCCCGCCAGCCCGCTGAGCGAGCAGGACATTAAGCCGGTGGAGGAGCTGCAACATTCGCCGAGGCAAGCGCATCTGGTGCAGCAGAGCCAGCCGCATCACGAGGCGAGCGCTTGGCGCGCTACCACCATGCCGAGCATGAGCACCTCCAACGGGCAGAGCCTGATCTACTCTCAGTCCGGGTACGGCGAGCCGGGGATGCACCACGAGGAGCACCACAGCCCTCATCTGAGCGAACACGGCCATCCGCAGAGCCTGCACTCGGACGAGGATACGCCGACCTCAGACGACCTGGAGCAGTTCGCCAAGCAGTTCAAGCAGCGCCGGATCAAGCTGGGTTTTACGCAGGCGGACGTGGGGCTCGCGCTGGGCACCCTCTACGGCAACGTCTTCTCCCAGACCACCATCTGCAGGTTCGAGGCGCTCCAGCTGAGCTTCAAGAACATGTGCAAACTCAAGCCCCTGCTGAACAAATGGCTGGAGGAGGCGGATTCCACCTCGGGAAGCCCGACCAGCCTGGATAAGATCGCGGCGCAggggaggaagaggaaaaagCGGACCTCCATCGAGGTGAGTGTCAAAGGGGCCCTGGAGAGCCATTTCCTCAAGTGTCCCAAACCCGGGGCGTCGGAGATCAACTCGCTGGCGGACAGCCTGCAGCTGGAGAAGGAGGTCGTGCGGGTTTGGTTTTGCAACCGGCGGCAGAAGGAGAAGCGAATGACGCCCCAGAACGGACCGATGGCCGGGAACGAGGATGTGTACGGGGACGCCTCGCCTCACCACGGCGCGCAGACACCTGTTCCGTGAGAAAGGGGCGGCCTGAAACATAATCGACTGTCTCTTTGTCCCGGTCACAAGCCCGCTCGGGGCGGACCGACGGTGATgaagtgtctctgtgtgtggcACCTCCGAGGGCGCGGAGAGAGCGCGCGTGGTTGCGCGAACAATATACGGGCGCGGGCGCCAGAAAACACGCTCTAAGGCGTTACGCGCCGCGGCTGAACCTAAAGAGGGAacgtaaatattattttatttaagagaTTTCTTTTCTTAAGTCCGGGGATCTGTGAAAGCATCATATCACTTCCAACCGaaagctgtgaaaaaaaaggCGACAGGGGCGCGCCATCTTCCCCTCATGACCACAAAAGGTTTCTTACTGATTTAAATTAATCCGGTGCAGTCTACTGTGCATTCTCTTCCATGTATTAATGGAAAATGCTTcgttatcatcattattattattattattattattattattattattattattagtgtttgcGTCACGATCACAAAAGGTTTTAATGCTGATTAAATtatgtgtatgcatttattttgcctttatatattaataacaataaataacctaataacaatagtaatcaaaatcataataataaaccgtatatctatttaaataaaaagataaaaaatcctaatatgaaaaaataacaacaaaaacaatcacatgtattattattttatcgtTATTATTAACATCGTGCACATCGAAAAGTATCACTGTTGAATTCAAACGTGATCAATTCTTTAAAAGTCTAATTTCGGTCACAACAAAGGCTGCCAAgtgctgctgtgtgtgtctttcaCAGGCAAAGCAGCCCGATTTCATGCAGATCACGGATTCACGCTGCTGCTGCAAAACAGAGGCCTGAGGAAACAGTACAACAGAGTGCTGTGGATCATATCGAAATTtctattcacaaaataaaattgacGGATGCCAGCTCTTTATAATTAACCACCCCGTTTGGGTTTTCTTAACATTTTGAGTGAATTTCTATAAGCGTGCACCAAAAGCGTTTGTGCTTCGAGACGgtggtttgtttattaagatCCTTCCTCCTCTCGGTTTAAAACGTGTTTATGGGGTTATTTAGCGTTTTCTAATTTAggaaatttaaaagaaaacaaaaccgaCTCGTATAATTcatgctattttatatttaagataacaaccaagctttttttaatttcagtaattaaTGACGAGATGCAAAACCGACACTGatgacaatataataataattattattattattaaaaggcaAATTGCtcttgtttgtaattattacagCAACACCGttcgatgatgatgatgataataataataatagactgATAGAGGCCAGTTATTCTTGCCCATATTATAGTAACATTGTGTGATTTTGTGCGTCAACTAAATGTATAAGCCTCAACATGTTTGTATCTGTttgctcttttgtgttttttgtttctcccaaatttgtctctttttttctttaacggGAAATATTACACCAGCTGTGTTACGCTGATTTGATGGCCTGCATCGAAAAACAAGGACATTGTGCGTCGATTTTTCAGTTGACTTTTCTATGGCTCTGTGAATACTTGTATATTTGTGCACTTAACCTGGCACTGCCAAAGCACAAGCTGTCAGTGTGCCCTATTGAGACCAGTAACGTCTTTGGTTTTGACAGAAAAATTGCACAGTTTTTAAACGCCTTTTGTCATTAAATGAATAcgttttttatataaagaagTGCCTCTCATCAATGCGCGCGCCCCGCGCGTGAAGATCCTAAAGAGAAATGGATTGACGATTTCACACGTTATTCGAGCGTCGAGGCTGTTCAATATAATGTAGCCTCGGGATGAGATGATGCTGTAGATCCGTCGCAATGCCTTCGCTAAGATTTCTGTGTGACCGTGGAGGCAAATATTTGTCAATTCTCCGCTCCTGAAAACGGATTTGACCGAACGAGATCGGAGACGTGCGTGAATGTTTTGGGTTATTCTGCATCCAATaggaaaataaatttaaaatacacccatggaaactaaataataaaacatattgtaataatagcttttttaaaatgactaatagAGACAAATTCTAGCGTACTGCATTATAATGCAGGCCCTTTTACGGACggctttttttataaatagacTATCATCGgccatttctttttaatcagtttatcCTATTGCTCCATCAATGCACACGTTCGGGATGCCAGACGTCCGTTTTATTTactgtgtgtttataataattagtgAATCATGGGACCTTGGAAATTTTCACTGCCTTGAAAAACtgcgtaaaaaaaaacgtaaagccgcattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagtcgagCAGCCAGGCTATATGCTGTGAGCGCCATCTATTGACTATAATGTGTTGGAGACAAGCAATTCTTAGTGAAATTGAGATATTACCGttgtctgtctgtttgcatGCATGTTCTGTTTAGTCAAATATCACAGCCATAAAGTCATGCAATATGAGCTCGGGGTGTATTTTATAAGTACAGCCTATCGTTTGTAGTCACTCATCTTGTTTAGTCTGGTGTCAGTGCAGGTGGTAGGCTATCTGAATAGATTTGTGTAGGTTATTTGGTAAGTAAAAAGTCCTATTAAGTCATTGCATATTGGTTGCGGATCATATTAATTTTGACTCCTGTAGCGTGAGTGTCAGTTGCGTTTGAGAAAAACGTGCTCATCGTTGGAAAGTTATTGTTTTGAAGCAGGTGGCGCATAAAAATATGGATTGCTTAGAATTGAATAACAACTTTAAATCtggattaatttaaaaaaaataaataaataaaacgttgcGTGCTCTAAATCTTACGTTGAATTTCTAACAGTCTGGGACAGCAAAGTGTTCACCTTTTACTTTCCCAAAGCGGAAGCTCGTTATGTTGAATGTGTAAGACTTCCGTTTCATTAGCCGCTATCAAGTAAAATAATAGCAGAGTGCTGTAAAGTTTGCGTTGCGTCAGCGTGTTTGTGATAATGAtgatagtaaataataattacaaatagcAGTATCCCATTTTAAGCAGGATAACACGGATTGTTTTGGTAAGGGTGAAATAGCTGGACCCTGATAACACCGGAAGCCATGCACATTCACAAACCTCCGCTTCCGCTTTTacgtgagaaaaaaaatggatattgaatattaaattaagaCATTAATAGCTACTTTAGATTATctgaattaataattacaattctACTAATTACATAACAAGcgcaataaattattatataggaataatttagcaatttttcTCAAAGCAAACATTTGTGACAGACTACTAAATCGGGCTATCTATTAGTAAAGAATATTAAGAGTTAAAGAAAGAACCCAGAAACCACACAACCAGAAACGGTTCATTTAATACAGCTatatttcatgaaatattttgaatatcttCAACACATTCTCCAGACGATTTTGTTTCCTTTATGTTACAGGGATCATTAGTTCAGGAACACAATCCCTCCCTCCCCAATATTATGTGTAGCCCATAATAAATCCATAAATCCAACAGGGTCATGATAAA

Function

symbol description
pou3f2a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within brain development and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in brain; neural keel; neural plate; and spinal cord. Orthologous to human POU3F2 (POU class 3 homeobox 2).

NR:

description
PREDICTED: POU domain, class 3, transcription factor 2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09365 POU3F, OTF; POU domain transcription factor, class 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236186.1 True 4856 mRNA 0.44 1 1940742 1945597

Neighbor

gene id symbol gene type direction distance location
mrps18a LOC107583989,LOC107710130,LOC107656376,LOC107736677,LOC107581188 coding upstream 42485 1896161 ~ 1898257 (+)
LOC122342504 si:dkey-14d8.7,LOC107583991,LOC107658912,LOC107725942,LOC107656269,LOC107710135,LOC107601130,LOC107579872 coding upstream 115680 1823635 ~ 1825062 (+)
mapk12b mapk12b,LOC107656379,LOC107710136,LOC107579544,LOC108442322,LOC103035956,LOC108279513 coding upstream 117992 1818023 ~ 1822750 (+)
mapk11 mapk11,LOC107725929,LOC107656380,LOC107579565,LOC107583972,LOC108442323,LOC103035641 coding upstream 124264 1809292 ~ 1816478 (+)
LOC122343360 NA coding upstream 132042 1805589 ~ 1808700 (+)
ngs LOC107583969,LOC107725974,LOC107658888,LOC107579501,LOC107656267,LOC107710103 coding downstream 15265 1960862 ~ 1965535 (+)
si:ch73-352p4.8 si:ch73-352p4.8,LOC107726064,LOC107710127,LOC107656372,LOC107583968,LOC107658734 coding downstream 27677 1973274 ~ 1979290 (+)
rhno1 LOC107736423,LOC107658898,LOC107583982 coding downstream 39971 1985568 ~ 1987174 (+)
pex26 LOC107658896,LOC107583978,LOC107725950 coding downstream 41879 1987476 ~ 1989937 (+)
usp18 LOC107725967 coding downstream 44908 1990505 ~ 1993588 (+)
G25193 NA non-coding upstream 31815 1907200 ~ 1908927 (+)
G25192 NA non-coding upstream 34636 1905830 ~ 1906106 (+)
LOC122342405 NA non-coding upstream 38856 1899896 ~ 1901886 (+)
G25086 NA non-coding upstream 109774 1830678 ~ 1830968 (+)
G25030 NA non-coding upstream 151466 1788631 ~ 1789276 (+)
LOC122342875 NA non-coding downstream 83199 2028796 ~ 2033049 (+)
G25249 NA non-coding downstream 103627 2049224 ~ 2050952 (+)
G25288 NA non-coding downstream 161166 2106763 ~ 2107094 (+)
G25300 NA non-coding downstream 222136 2167733 ~ 2167997 (+)
G25309 NA non-coding downstream 337693 2283290 ~ 2283777 (+)
LOC122342451 NA other upstream 152646 1784237 ~ 1788096 (+)
LOC122343488 NA other upstream 267783 1670512 ~ 1672959 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 608899 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 649518 1288297 ~ 1291224 (+)
LOC122342481 LOC107584054,LOC107658775,LOC107725972,LOC107711476,LOC107581286,LOC107656415,LOC107725915 other upstream 691573 1245578 ~ 1249169 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other downstream 48643 1994240 ~ 1995536 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other downstream 1154140 3099737 ~ 3117994 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 1173918 3119515 ~ 3306758 (+)
G25514 NA other downstream 1536032 3481629 ~ 3502094 (+)
G25551 NA other downstream 1791905 3737502 ~ 3738594 (+)

Expression


Co-expression Network