LOC122342420 (LOC107667978,LOC107563545)


Basic Information

Item Value
gene id LOC122342420
gene name LOC107667978,LOC107563545
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24770632 ~ 24782341 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236193.1
TGCTCTTGGACCAACTGATGGAGCTGGCAGAAGATGAACTGAAGAATTTTCATTGGCATTTAGTGAATTTTTATCAAAAGTGCATATCAAAGTCTGAATTGGAAAATGCAGATAGATGTGACACAGTAGATAAGATGGTGATGTGTTTTGGACCAGATGAAGCTGTGAAGGTCATGGTAGACGTCCTGAGAAAGATAAACCAAAATGATCTGGCTGAACAGTTGCAGAATGAACACAAGCaagCTCAGACTGAGGACAATATGAAGACATCTGTCCCTGTTAGAGAGCTGCAAAATGTCTTGAAgactcacaaaaacaacatgaagatgaaggcaaaatacatttttgagggCAACAAAGAAACTGACACAGATCTGAAAGCTGTTTACACAGatctgttcatcacagaggGAGATATAAAAGATGTAAATCAGGAACATGAGATTCTGAAGATTGATGATGCTTTcaagagcaaaaaaacacaggacaaaccaatcaaatgcaatgatatatttactgaactAAGGAAAAACAATGAGTTAAAGATTGTGTTGACCAAAggagtcgctggcattggaaaaactgtgtctgtgcacaagttcatcctggactgggcaGAAGGAGAATCTAATCAGGATATAGACTGTGTGTTCCTgcttccattcagagagatCAACGTgattaaagagagagaggtcaGTCTCCATGAGTTTCTGCTGAAATTTAATCCTGAATTGAAGGACCTGGAGAAATCAAAGttatatacagaatataaacttgtgtttatttttgatggacttgatgagAGTCGACTGCCTTTGAATTTTGAAAGTGATACAATGAACACTGTTGAGGAAAGATCATCTGTAGATGTGCTGTTTACAAGTCTGGTCAAAGGTAAACTGCTTCCATCAGCTCTTGTCTGGGTCACATcacgaccagcagcagccaatcagattcctcCTCAGTATGTAGGTTTGTTCACAGAGGTGCAAGGATTCACTGACCTACAGAAGGAGGAGTACTTCAGAAAGAGATTCACAGATGAGAGTCTGTcctccagaatcatctcacacattaagacgtctcgtagtctctacatcatgtgccacattcctgtgttctgctggatcacagccacagtacttcaggatattctcactgagaataatgaagagaacatcagcacaacactcactgaaatgtacattcacttcctgAGGATACAGATGAACATGAAGAGTCAGAAGTATGATGAACAACAAGAAGGAGAATGTTCAGagcatttacttttaaatagaaagatGATTCTGAAGTTAGCCAAGCTAGCGTTTGAACAGCTGAAGcaggaaaacattgtgttctatGAGAAAGATCTGAAAGCATGTGGTATTGATGTGAGTAAAGATGCTGAGTTCACAGGAATGATCGCTGAGATCTTTAAGAGGGAAGTTGGACTTTATAAGACAAAGGTCTTCTGCTTTGTGCATCTGAGCATTCAAGAGTTCCTCGCTGCAGTGCATGTGTTCACCtgttacctgaaaaaaaacaagcaagagcTTAAGTTTTTCTTTGAGAATTCACAAACTACAGTCATACAAAATCTTACATTTCCTTTTAGAAAGGTCAAATGGCGTGACTTAACAGAGAGAGCCAttgaaaaagcaatgcaaagtaAGAGAGGGCATCTGGACCTGTTCCTGCGGTTTCTGATGGGCATTTCACTGGAATCCAGTCAAAATCTGCTCAAaggcctgatcacacacactgaagacaCCACAGAGAGCATCAGAAATCTAAGTGCCCACATTAAAGAATTACAACAACAGGACATCTCAGATGAAGCTTCAGTCAACCTGTTCTACTGCTTACTTGAACTGAAAGATCATTCATTATATGAGGAAATCCAGAGTTACCTCAGTTCAGATGAACATCCAGGAAGAGATCTCTCGTCTTCAATGTGCACAGTGTTGACCTCAGTACTGCTGATGTCAGAGAAAGTGCTGGATGAGTTCAACCCAAAGAGGTTCACATCAGAACATTCAGACTACAAGAGACTCATTCCAGCTGTGAGATGCTGTAGAAAAGCTCTATTTGAAAGCTgtggttttgatgaaacatgctgtgaaaCTCTGTCTTCTGCTCTACAAACATCAAACCATCTGACAGAGCTgaacctgagtaacaatgatctgcaggattcaggagtgaagctgctttctgatggactgaagagttcaCACTGTCGTTTAAACATACTGAGGCTGTGTGGGTGTCATCTCACTGCTCTGTCCTGTGAAAGTTTATCTTCAactttacaatcctcaaactctgtcctgagagagctgcacctgagtaacaatgacctgcaggattcaggagtgaagcttcttTCTGATGGACTCAATAGTCCAGTCTCTAAACTGGAGATACTAAGATTTTCcacatgtaatctcactgcacagtCTTGTGGGAGTTTGTCTTCAactttacaatcctcaaactctgtcctgaaagagctggacctgagtaacaatgatctgcaggattcaggagtgaagcttcttTCTGATGGACTCAATAGTCCAGTCTCTAAACTGGAGATACTAAGATTTTCcacatgtaatctcactgcacagtCTTGTGGGAGTTTGTCTTCAactttacaatcctcaaactctgtcctgaaagagctggacctgagtaacaatgatctgcaggattcaggagtgaagcttctttctgaaggactgaagagtccaaactctaGACTGAAGATACTGAGGTTGTCTGGCTGcatggtgacagaggaaggctgtggttatgtgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatccgggagattcaggagtgaagctgctctctgaaaaa

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236193.1 True 2924 mRNA 0.41 8 24770632 24782341

Neighbor

gene id symbol gene type direction distance location
LOC122342991 LOC107685875,LOC107570416,LOC107671223,LOC107749047,LOC107728228,LOC107569032 coding upstream 82652 24679922 ~ 24687980 (+)
LOC122343104 NA coding upstream 98481 24667706 ~ 24672151 (+)
LOC122343093 NA coding upstream 105056 24661829 ~ 24665576 (+)
LOC122343105 NA coding upstream 117417 24648967 ~ 24653215 (+)
LOC122342946 NA coding upstream 151241 24607037 ~ 24619391 (+)
zmp:0000000926 LOC107754864,LOC107661991,LOC107568831,LOC104958731 coding downstream 735055 25517396 ~ 25553833 (+)
l1camb LOC107661992,LOC107746188,LOC107598812,LOC107568828 coding downstream 790736 25573077 ~ 25609845 (+)
lsm14b lsm14b,LOC107748998,LOC107569639 coding downstream 849020 25631361 ~ 25634808 (+)
ogfr ogfr,LOC107706812,LOC107690085,LOC107713566,LOC107677637,LOC107598801 coding downstream 921490 25703831 ~ 25709637 (+)
col9a3 col9a3,LOC107713563,LOC107598802,LOC107680173,LOC107719903,LOC107677638,LOC106571930 coding downstream 929321 25711662 ~ 25728651 (+)
G30877 NA non-coding upstream 55634 24714697 ~ 24714998 (+)
G30812 NA non-coding upstream 283745 24456022 ~ 24486887 (+)
LOC122343172 NA non-coding upstream 351064 24417843 ~ 24419568 (+)
G30819 NA non-coding upstream 456344 24310339 ~ 24314288 (+)
G30754 NA non-coding upstream 760741 24003642 ~ 24009891 (+)
G31223 NA non-coding downstream 206526 24988867 ~ 24989274 (+)
G31226 NA non-coding downstream 531882 25314223 ~ 25314596 (+)
G31228 NA non-coding downstream 532838 25315179 ~ 25315553 (+)
G31380 NA non-coding downstream 1005039 25787380 ~ 25787901 (+)
G31388 NA non-coding downstream 1034690 25817031 ~ 25817564 (+)
LOC122342408 NA other upstream 3080 24743848 ~ 24767552 (+)
G30882 NA other upstream 42185 24721424 ~ 24728447 (+)
LOC122343086 NA other upstream 96220 24672891 ~ 24674412 (+)
LOC122343125 NA other upstream 124031 24639089 ~ 24646601 (+)
LOC122343159 NA other upstream 131978 24636352 ~ 24638654 (+)
LOC122342771 ss18l1,LOC102784650 other downstream 852701 25635042 ~ 25688230 (+)
G31298 LOC107569336,LOC107690089,LOC107706811,LOC107090263,LOC107391191,LOC105928559,LOC103357353 other downstream 911461 25693802 ~ 25695381 (+)
G31384 NA other downstream 1030290 25812631 ~ 25813625 (+)
LOC122342372 LOC107752513,LOC107665166,LOC107549841,LOC107753705,LOC107575738 other downstream 2515195 27297536 ~ 27371196 (+)
LOC122342494 znf384,LOC107671195,LOC107582054 other downstream 2574471 27356812 ~ 27358163 (+)

Expression


Co-expression Network