podxl (podxl)


Basic Information

Item Value
gene id podxl
gene name podxl
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5540289 ~ 5549648 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236196.1
GCGAGCTGCTGCGTCTCAGACCTGTCTCGAGATCGGCCGCACAGCACGTCACTCCAGGCGAGTCCGCGCATTCAATACATCACAATCCGCGCAGCCAAGGAAACCCAGCAAAACTTTGCCCCCCAAATCCCCGGACCCTCAGGGTGGGGTAGAGACTCCGAGAAGAGGCAGCTCAGACAAAAGCACTCCTCTTGgctttaagataaaaaaaaaaaaataccagctGCAAAAAGAAGTCCAGATACAAACTCAAGACGATAAGCGGAACCGATCGGCGTCTCCACATTTTCATGCAAAACTTTCCCTGAAGTCACTGAAAGAGCAGCGAGCATCAAACTGAGGGACTGAAAATGGCAATCTCGTGGACGCTCATTGTATTAGGTGCCCTCCTGCAAGGCATGCAGTGCAACGCTGATGATAGCACAACAACACCGTCTGTCGTTACAACAGTCTCCTCTAAACCCACCGTGTCTTCTAACTTACTAGGATCCATTACTGCCTCAGTGACGTCTCCTACACTCACCACTACACAGTCCACTGAAACTGCCACTACATTACAGACCTCTACAGCCAAATCTACTCTCACCACATTGGGGGCCACTAAAACTGCCCTCATATCCTCCTCAACAGATTCCAATACACCCACTGCTCCACTGACCACTACAATCACTCCATCGACTACGCCAACTTTATCAGTGACCAGTAAACCAACCTCACAAAATGGTCCTGGCACAACCCATATCACAACCATTCAACCCAAAACGTCCAACACAGTCACTACACTTACACCCTTCAACAGCAGTACTGAAAAATCAACTACAACTGACAATTCAACCGATCCCAAACAAGACAACACCAACGAAACTACACCTGCGACTGCTACATCTACAGAAGTCGTCACCACCCAGCTCTCGTCTAATCAGACAAACTCATCTTCTCCTACTGTTAACAAAATTTCTACATCACCAATCACAGTAACACCGGACTCTAAATCTACCACTTCTCAAAATCCCGATACAACAAAAGCACAAACTACAGCCTCAACCATACGACAAAATATTATGAGTAGCACCTCTACTCCCGAAAATGTCTTTAAGTATTCCTTTGAGCTAAACAGCACTGAGGCAAACGATGTCCTTCAAGCCTGCAAGTCGTTGGGTCAGAAGATGAAATTCAATTGCATGATAACTCATGACAACCGAATAACTGCAACAATAACAATAGCTGCTGACCAGAAAATACAGCCAAGAAACGAGCAGCATGACGGTGGAAATGCGGACAGCAAGGACACGATACCGGACACGTTGATCGCCATCTTGGCTTCTTGTGGCGCGTTGGTGCTCATTCTGTGCTGCTTTGCAGCATACTGCACTTATCATCGCAGATCCTACAGGAAGAACCAGCAACACCTGACGGAAGAGCTGCAGACAGTGGAGAACGGTTATCATGACAATCCCACACTGGAGGTGATGGAGGTCCAGCCGGAGATGCAAGAGAAGAAACTGACAATGAACGGGGAGTTTAACGACAGCTGGATCGTCCCCATAGACAACCTGCTGAAAGAAGACATACCTGATGAAGAAGACACACACTTGTAATGGCATCAGATGAATTGTCTGGAAAAAGAAACCTGCTGCTCTCATAACGGTAGATTGTGACCGGCCAGAATGTAGAGAAAGCAGAGATTGACAAAGACTATCAAATGACAGTGGTTTCATTTGGTGCCAGGGTGTATATGCTGTAATTAAGTAGTTGGATGTCAAGTATTTGCTAGAAATAGCAGAAAGGTTTTTAAGTTTTGTGTGTCACTGTGCTTGGGAAAGGGAAAATCTGTAAATGGAATGGCAATGTACAATCTGGGGTGTCTCTTTGCCTTAACTTTTCTTTAGCACACTTCAAAAGTAagtttttataaacaatatataagaAACATCAGGTAAATTAGCCCATTTATGACTTATAAATGATTTGGTCcaatcattttcagttttgaatgaaaaaattatttagattttgctTGTCATCTTGGAACGTTTTTCCCACTGCAATGCCTGTTGGGACGGCATTCTTTAAATGTGAAGCTGGCCAAAATAAGGCATTCATTTCACTGCCTTTGCATTATGATATTGTCAAGCAGGTTTAAGTTACACATGCTaattacttaaaggaatagttcacccaaaaatgaaaattgcatgATATTAGACTTAGGATGGCTTggggttaaataaaatatgccattaaaaactttgggtgaactattctacttttttttttttttttaacttacgTTGTGGAGCACTCAAAACGTTGTTTCTACCTGATAATAATGAGCATAAATTGTAATACTACAATAGAAATTTAACTTTCCCATGACTTAAGGCCCAGAAATCACATTTATCCAGTGGAAACCTTATGTCACTTCCTGAGCAGAATGTAATTATTGTTcttgtacattttgtttaattttacgCTTCTTCCataattagtttgttttctgtttaggAAAGATTAACACTCATTGGCAGCAAATTACACTTGGACCAATGGATAATTCATCCTGGTAAATTAGACTATGGGTCAAAAGTATGTGACCCCACGATTGGCAGATAACTTTTCATTATCTTCCATCTGCTCCACTTACGTCTCGTTGTTGTTAATCATGCCAATATAAAGGTTTTTGGTCTTGTCAACCTGCAACACTAAATCCAGCACAACTCATTTACATACTTAAAGTTAAGTTACAGGTATGAAATCATAACGTGTCATTGTCTTTAATCAGAAAGGTCACCTTTTTCTTTgagtgtgttttaatttaattgctttattGTTGATAATCACCAAaacaagttttgtttgttttttgtatttgcatgcaCTACACAATTTTCAATATAAGGGATTCACTGCTGTTTCAGGCTAGCTCTTGTTCTTCCACCAAAGTATTAAGGTTGAATTTATAGTTGTATTCTGTATTTGAAGTCAGTTTGCTGCTGTGCACAAACGACAGGGGTCTGATACACTGGAAGCTTCATCTCTGTCAGATTGGATGGGGATGGCCATGATTtcgaatataaaaatattttaaaaaga

Function

symbol description
podxl Acts upstream of or within pronephric glomerulus morphogenesis. Predicted to be located in several cellular components, including filopodium; lamellipodium; and ruffle. Predicted to be integral component of membrane. Predicted to be active in apical plasma membrane and microvillus membrane. Is expressed in cardiovascular system; hindbrain neural keel; pronephros; and yolk syncytial layer. Orthologous to human PODXL (podocalyxin like).

NR:

description
PREDICTED: podocalyxin

GO: NA

KEGG:

id description
K06817 PODXL; podocalyxin-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236196.1 True 3093 mRNA 0.41 7 5540289 5549648

Neighbor

gene id symbol gene type direction distance location
net1 net1,LOC107560732,LOC107586493 coding downstream 64107 5454172 ~ 5476182 (-)
prmt8b prmt8b,LOC107757234,LOC107690649,LOC107694311,LOC108436013 coding downstream 305233 5224238 ~ 5235056 (-)
LOC122342835 LOC107571041,LOC107571048,LOC107658713,LOC107739149,LOC107704613,LOC107658717,LOC107733017,LOC107745022 coding downstream 324127 5207074 ~ 5216162 (-)
LOC122342834 LOC107690655,LOC107758320,LOC107745022,LOC107758319 coding downstream 334968 5201608 ~ 5205321 (-)
LOC122343482 LOC107757207,LOC107690654,LOC107758319,LOC107690655,LOC107574392,LOC107575819,LOC107573508,LOC107698248,LOC107573509 coding downstream 338605 5197046 ~ 5201684 (-)
LOC122342741 cyb5r3,LOC107590616,LOC107694301,LOC107757248,LOC107655553,LOC103021355,LOC105020308 coding upstream 26009 5575657 ~ 5578580 (-)
btbd11a btbd11a,LOC107757250,LOC107694300,LOC107725623,LOC107655613,LOC107560708,LOC108279962,LOC108426402 coding upstream 30854 5580502 ~ 5711019 (-)
si:dkey-222f8.3 si:dkey-222f8.3,LOC107694297,LOC107757251,LOC107725584,LOC107560723,LOC107655610 coding upstream 170768 5720416 ~ 5724961 (-)
braf braf,LOC107725591 coding upstream 370997 5920645 ~ 5937372 (-)
cnot4b cnot4b,LOC107725638,LOC107560719,LOC107655607,LOC107694291,LOC107757256,LOC107602455,LOC108426397 coding upstream 470521 6020169 ~ 6039771 (-)
LOC122343358 NA non-coding downstream 20437 5487063 ~ 5519852 (-)
G26320 NA non-coding downstream 30030 5509992 ~ 5510259 (-)
G26319 NA non-coding downstream 30522 5509304 ~ 5509767 (-)
G26317 NA non-coding downstream 31188 5508871 ~ 5509101 (-)
G26316 NA non-coding downstream 32560 5507496 ~ 5507729 (-)
G26359 NA non-coding upstream 5494 5555142 ~ 5569372 (-)
G26361 NA non-coding upstream 20896 5570544 ~ 5573432 (-)
G26398 NA non-coding upstream 154841 5704489 ~ 5710206 (-)
LOC122342480 NA non-coding upstream 165491 5715139 ~ 5716435 (-)
trnay-gua_3 NA non-coding upstream 167398 5717046 ~ 5717133 (-)
LOC122343483 LOC107571041,LOC107724548,LOC107658713,LOC107704613,LOC107739149,LOC107589471 other downstream 445649 5085090 ~ 5094640 (-)
LOC122343492 LOC107743325,LOC107580925,LOC107658806,LOC107656283,LOC100330186,LOC107744995 other downstream 782462 4731224 ~ 4757827 (-)
G25880 LOC107658814,LOC107726023,LOC107592209 other downstream 1272794 4264926 ~ 4267495 (-)
shank3b shank3b,LOC107725995,LOC107592218,LOC107656300,LOC107580703,LOC107743477 other downstream 1378461 4133977 ~ 4161828 (-)
LOC122342823 scube2,LOC107750541,LOC107585952,LOC107674429,LOC107593229,LOC107700597 other downstream 1921922 3602356 ~ 3618367 (-)
G26405 tnnt2c,LOC107560724,LOC107655611,LOC107725585 other upstream 169364 5719012 ~ 5720250 (-)
G26408 NA other upstream 180370 5730018 ~ 5736946 (-)
G26414 LOC107560737,LOC107690649,LOC107757234,LOC107589816,LOC107694311 other upstream 300756 5850404 ~ 5853366 (-)
G26462 NA other upstream 357107 5906755 ~ 5913538 (-)
mrps33 mrps33,LOC107694294,LOC107597883,LOC107725593,LOC107600452,LOC107655561 other upstream 388407 5938055 ~ 5940015 (-)

Expression


Co-expression Network