epyc (epyc,LOC107744933,LOC107690887,LOC107592694,LOC107659828,LOC107725680,LOC107565627)


Basic Information

Item Value
gene id epyc
gene name epyc,LOC107744933,LOC107690887,LOC107592694,LOC107659828,LOC107725680,LOC107565627
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8255550 ~ 8266189 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236207.1
CATACGGACAGGTAGGGCACACGGGTCTGGGAGTGTGTGAGCACGTACACGTCACACACACCCAGAAGCATCCGCACACAAGATACACACTCACCGTGAGTGACCCGTTGCCATTGGCCAGGCCCACCAACCCTCTGCCTGTCCAAGCTGAAGAACAGGACCATTTGGgaaaggaggagaaagagCAGGAAGATGGTAACGCTGAGGTTGATGTGGGGACTCCTGGTCCTGTGTGTGGTGGCAGCCTCTCCCCGCAGATACGTCCGACAAGCAGAACCAGATAACTACGACGACAACAATGTGGATTTAGACCTGAATGTGGATAACGATGATGTCTATGACTATTACGATGGAATTGATGAACCACAGATAGAGATTGGCACCTTGAGTCCTGATGAGGACATTGATCCTTCACATCATGCCTCAttggaggaagaagaagaggaggaggagcatGTGGAACATGAAGAACGGAGGACAGTTGAGGGGAGAGAAAACAAGGAAGTGCCCATAAAGCCTCAGTTTATTCCATCAGGCTCTGGGGAGTCTGGGACTCTGATGGGCCCTAGTGCACAAGGAGAGGAGGAGCTTCGTCTGACGCCCATTGACAATCTTCAGATTTCTGGGGACATTTCGGGTTCTGGTGACTTGGGTTCTGGTGACTTGGGTTCTGGTGACTTGGGCTCTGGAGACTTACTTGATGACAAAGCGTCCGGTTCTGGAGAGCTTTTGGGCTCTGGAGGTTCTGGGGGCTCTGGCGACATATCAGGTTCTGTGGACTCAGAGGACCCTGGTTCTGAAGTCTCTGGGCTTTTTGGTTCAGGCATAATATTGATCTCAGGTGGAGAGGAGGAGCTCCACTTGACGCTTGAAACCATTCCACACGAGGCCTCTGGGGATTTTGGAGAGTCTGGAATCTCTTGGGTGTCTGGAGCTTCTGGGTTACCTGAGGTGTCAGGAGAGCCTTCTGCCTCTGGGGTTCTTGATGTTTTTGAAGAGCCTTCTGGGGTACATGAGGTATCAGGAGATCCTGGGGCCTCTGGAGTACCTGAGCTGTCAGGAGAATCTGGGGCCTCTGGAGTACCTGAGCTGTCAGGAGAATCTGGGGCCTCTGGAGTACCTGAGCTGTCAGGAGAATCTGGGGCCTCTGGAGTACCTGAGGTGTCAGGAGAATCTGGGTTTTCTGGAGAACCTGGGGTCTCTGGGGTATCTGAGGTGTCCGGAATATCTGGGGTTCCAGAGATTTCAGGAGAATCTGGGCACTCTGGTATACCAGAGGTTTCTGGGGGGTCCGGGACCTCTGGGTTGCCTGAGGTGTCTGGAGAGCCATTATTCTCTGGGGTGACTGAGGAGCCTGGAGAAATTGAGCCTGTGGTCCCTGAAGAGTCTAAAAGGCCTGAGGCCTCTTGGGAGTCAGGAGAGTCTGGAAGCACAGAAGAGTCTGGGGTGACTGAAGCCCCAGTCGTCaccactgaaatattaatacctGACTTAGATGAAGAGGAGGAGATATTCCTAACTACCCCGGCCACTCCCTTGGAGGGGACTGGGGGTGATATAGGGTCAGGGATACCTGATATAACAGGTATGGGTACCTGTATGCTCTGCACCTGCTTGGTCGGATCTGTGTACTGTGATGACCTGAAGCTGGACCGTGTTCCTCCCCTCTCCAAAGAAACCACTCATTTCTATGCCCGCTACAACAAAATTGCTAGGATCGGCAAGTCTGACTTCGCCAACCTGAATAAATTAAAGAGGATCGATCTGACTAGCAATGGCATTTCTAGGATTGATGATGATGCTTTCTTTGGCCTTCCTGCTCTGGAGGAGTTGGTATTACGAGAGAATAGTATTAGGCAACTTCCTGCTCTGCCACCCTCTATGACCCTTATTGATGCCTCTCTCAACCAGCTGGGCAGTACTGGCATTCAGAGAGAAGCtttcaagGACATGCCAGGCCTACTCTACCTTTACCTGACAGAAAACAACATAGACCACATCCCGGTTCCTTTGCCTGACAGTCTGCGCTCTCTGCACCTACAGAATAACAATATTCAAATGCTGCATGAGGACACCTTCTGCAATCCACATGACTTGAATTACATCCGCAATGCTCTTGAGGACGTTCGCCTGGACGGTAATCCCATCAACCTCAGTAGAACCCCACAGGCCTACATATGTTTGCCACGTATCCCCGTTGGTGCCCTTGTTTAAGCAGAGAAAACGCACACTCAAATGCACGCGTACAAAACTCACACGTATGCACATGCATCAAAACTCCTCTGTGCGtacctctctctttttttttttttttttttactttgggCTCAAGCAAACACTTGGATATGAATGGCTGTCTTTAAAGAAGGTTggcataaatacataaactcaCACTCTCACAGGAGTTCTGGTGGACACTTCCAACTCTACGCTGCTT
>XM_043236208.1
CATACGGACAGGTAGGGCACACGGGTCTGGGAGTGTGTGAGCACGTACACGTCACACACACCCAGAAGCATCCGCACACAAGATACACACTCACCGTGAGTGACCCGTTGCCATTGGCCAGGCCCACCAACCCTCTGCCTGTCCAAGCTGAAGAACAGGACCATTTGGgaaaggaggagaaagagCAGGAAGATGGTAACGCTGAGGTTGATGTGGGGACTCCTGGTCCTGTGTGTGGTGGCAGCCTCTCCCCGCAGATACGTCCGACAAGCAGAACCAGATAACTACGACGACAACAATGTGGATTTAGACCTGAATGTGGATAACGATGATGTCTATGACTATTACGATGGAATTGATGAACCACAGATAGAGATTGGCACCTTGAGTCCTGATGAGGACATTGATCCTTCACATCATGCCTCAttggaggaagaagaagaggaggaggagcatGTGGAACATGAAGAACGGAGGACAGTTGAGGGGAGAGAAAACAAGGAAGTGCCCATAAAGCCTCAGTTTATTCCATCAGGCTCTGGGGAGTCTGGGACTCTGATGGGCCCTAGTGCACAAGGAGGTATGGGTACCTGTATGCTCTGCACCTGCTTGGTCGGATCTGTGTACTGTGATGACCTGAAGCTGGACCGTGTTCCTCCCCTCTCCAAAGAAACCACTCATTTCTATGCCCGCTACAACAAAATTGCTAGGATCGGCAAGTCTGACTTCGCCAACCTGAATAAATTAAAGAGGATCGATCTGACTAGCAATGGCATTTCTAGGATTGATGATGATGCTTTCTTTGGCCTTCCTGCTCTGGAGGAGTTGGTATTACGAGAGAATAGTATTAGGCAACTTCCTGCTCTGCCACCCTCTATGACCCTTATTGATGCCTCTCTCAACCAGCTGGGCAGTACTGGCATTCAGAGAGAAGCtttcaagGACATGCCAGGCCTACTCTACCTTTACCTGACAGAAAACAACATAGACCACATCCCGGTTCCTTTGCCTGACAGTCTGCGCTCTCTGCACCTACAGAATAACAATATTCAAATGCTGCATGAGGACACCTTCTGCAATCCACATGACTTGAATTACATCCGCAATGCTCTTGAGGACGTTCGCCTGGACGGTAATCCCATCAACCTCAGTAGAACCCCACAGGCCTACATATGTTTGCCACGTATCCCCGTTGGTGCCCTTGTTTAAGCAGAGAAAACGCACACTCAAATGCACGCGTACAAAACTCACACGTATGCACATGCATCAAAACTCCTCTGTGCGtacctctctctttttttttttttttttttactttgggCTCAAGCAAACACTTGGATATGAATGGCTGTCTTTAAAGAAGGTTggcataaatacataaactcaCACTCTCACAGGAGTTCTGGTGGACACTTCCAACTCTACGCTGCTT

Function

symbol description
epyc Is expressed in cartilage element; notochord; otic vesicle; and splanchnocranium. Orthologous to human EPYC (epiphycan).

NR:

description
PREDICTED: epiphycan-like

GO: NA

KEGG:

id description
K08127 EPYC, DSPG3; epiphycan

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236207.1 True 2437 mRNA 0.51 10 8255550 8266189
XM_043236208.1 False 1432 mRNA 0.49 7 8255550 8266189

Neighbor

gene id symbol gene type direction distance location
atp2b1a atp2b1a,atp2b1,LOC107676914,LOC107690705,LOC107585291,LOC107725550,LOC107744884 coding downstream 97181 8131796 ~ 8158369 (-)
mest LOC107676916,LOC107725549,LOC107690703,LOC107744881 coding downstream 139098 8112969 ~ 8116452 (-)
chchd3a chchd3,chchd3a,LOC107555550,LOC107676930,LOC107584776,LOC107725634,LOC107690666 coding downstream 339943 7859957 ~ 7915607 (-)
plxna4 plxna4,LOC107725603,LOC107555548,LOC107676920,LOC107729844,LOC107592200 coding downstream 413501 7651083 ~ 7842049 (-)
nrf1 nrf1,LOC107676924,LOC107690626,LOC107725613,LOC107584621,LOC107555547 coding downstream 667133 7572881 ~ 7588417 (-)
kera LOC107725681,LOC107744893,LOC107690746,LOC107596099 coding upstream 1535 8267724 ~ 8274530 (-)
lum lum,LOC107659852,LOC107565637,LOC107725655,LOC107744894,LOC107690761,LOC107585613 coding upstream 12371 8278560 ~ 8281902 (-)
dcn LOC107744892,LOC107690767,LOC107585689,LOC107659851,LOC107565639,LOC107725622 coding upstream 23066 8289255 ~ 8304456 (-)
LOC122342541 LOC107725512,LOC107565629,LOC107690781,LOC107744891,LOC107585840 coding upstream 55265 8321454 ~ 8325846 (-)
btg1 btg1,LOC107585922,LOC107725570,LOC107659850,LOC107744895,LOC107690792,LOC107565641 coding upstream 101347 8367536 ~ 8374512 (-)
LOC122342531 NA non-coding downstream 9041 8200177 ~ 8246509 (-)
LOC122342218 NA non-coding downstream 85963 8168273 ~ 8169587 (-)
G27063 NA non-coding downstream 128726 8126342 ~ 8126824 (-)
G27050 NA non-coding downstream 131690 8123114 ~ 8123860 (-)
G27051 NA non-coding downstream 133842 8121346 ~ 8121708 (-)
G27240 NA non-coding upstream 209975 8476164 ~ 8478311 (-)
G27249 LOC107725541,LOC107659837,LOC107590048 non-coding upstream 267642 8533831 ~ 8536676 (-)
LOC122343385 NA non-coding upstream 495910 8762099 ~ 8774171 (-)
G27263 NA non-coding upstream 537966 8804155 ~ 8805230 (-)
G27257 NA non-coding upstream 539055 8805244 ~ 8809184 (-)
LOC122343432 NA other downstream 5623 8247911 ~ 8249927 (-)
G26951 NA other downstream 697097 7555115 ~ 7558453 (-)
si:dkey-261e22.4 NA other downstream 1034639 7214334 ~ 7220911 (-)
il22 NA other downstream 1514809 6737641 ~ 6740741 (-)
msrb3 msrb3,LOC107725596,LOC107587134,LOC107757268,LOC107561995 other downstream 1894066 6350491 ~ 6361484 (-)
G27232 LOC107589947,LOC107725677,LOC107659846,LOC107586091,LOC107694692 other upstream 194317 8460506 ~ 8468028 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other upstream 247441 8513630 ~ 8517583 (-)
th2 pah,th2,LOC107590157,LOC107664872,LOC107587609,LOC107744916,LOC107695848,LOC108437952 other upstream 604026 8870215 ~ 8874598 (-)
LOC122343470 LOC107593478,LOC107664836,LOC107744937,LOC108435459,LOC108279443 other upstream 625830 8892019 ~ 8941403 (-)
klhl42 klhl42 other upstream 738071 9004260 ~ 9009304 (-)

Expression


Co-expression Network