rps16 (rps16,LOC107590675,LOC103382554)


Basic Information

Item Value
gene id rps16
gene name rps16,LOC107590675,LOC103382554
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11296296 ~ 11298238 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236210.1
cacacatacataatctTAGCAGCTTTAAGTGTCGTAAACACTCTATCGCGGATGCTTTTACGACAGCGCCCCTGCTTCTCCGCTCAGGAAACCCTTGTGCGGCCTCTCCGAATAGCGCTCGCGCACTGAAAGAACCATGCCGGCTAAAGGTCCCCTACAGTCTGTCCAGGTTTTTGGACGTAAAAAAACAGCCACTGCTGTTGCCCACTGCAAGAGGGGAAATGGACTCATCAAAGTCAACGGAAGACCTCTTGAGATGATCGAGCCTGCCACTCTGCAGTACAAGCTGCTGGAGCCTCTTCTGCTGTTGGGCAAGGAGCGCTTTGCTGGCGTTGACATCAGAGTTCGCGTGAAGGGTGGTGGACACGTTGCACAGATTTACGCCATCCGTCAGGCCATCTCCAAAGCCCTGGTTGCCTATTACCAGAAATATGTGGATGAGGCCTCCAAGAAAGAGATCAAGGATATCTTGATTCAGTACGATAGGACCCTGCTGGTCGCCGATCCCCGCCGCTGCGAGTCCAAGAAGTTTGGTGGACCTGGAGCTCGCGCCCGCTACCAGAAGTCCTACCGTTAAAATCTCTCTGTACATTTTCGTATAATAAATCCGAGGGGGAAAACA

Function

symbol description
rps16 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS16 (ribosomal protein S16).

NR:

description
PREDICTED: 40S ribosomal protein S16

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02960 RP-S16e, RPS16; small subunit ribosomal protein S16e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236210.1 True 622 mRNA 0.52 6 11296296 11298238

Neighbor

gene id symbol gene type direction distance location
ppp1r12a ppp1r12a,LOC107749073,LOC107755884,LOC107694147,LOC107680011 coding downstream 20708 11220536 ~ 11275588 (-)
pawr pawr,LOC107694180,LOC107591114,LOC107755907,LOC107734443,LOC107680012 coding downstream 82998 11165268 ~ 11213298 (-)
ints13 asun,LOC107590623,LOC107738827,LOC107589038,LOC107733003 coding downstream 610345 10676477 ~ 10685951 (-)
napepld napepld,LOC107738826,LOC107694176 coding downstream 650537 10637783 ~ 10645759 (-)
stk38l stk38l,LOC107738822,LOC107590537,LOC107694172,LOC107699048 coding downstream 812195 10477213 ~ 10484101 (-)
lin7a lin7a,LOC107755905,LOC107590687 coding upstream 40103 11338341 ~ 11376262 (-)
hcls1 hcls1,LOC107755885,LOC107694186,LOC107710670,LOC107680042,LOC105023407,LOC103459100 coding upstream 276937 11575175 ~ 11582303 (-)
golgb1 golgb1,LOC107694188,LOC107755883,LOC107590726,LOC107710669,LOC107590960 coding upstream 284524 11582762 ~ 11602022 (-)
orc5 orc5 coding upstream 309072 11607310 ~ 11617489 (-)
kdm7aa LOC107694190,LOC107590789,LOC107710674,LOC107590966,LOC107680036 coding upstream 392884 11691122 ~ 11710502 (-)
G27974 syt1a,LOC107590640,LOC107694178,LOC107734425 non-coding downstream 36813 11126502 ~ 11259483 (-)
LOC122342624 LOC107694146 non-coding downstream 363895 10930597 ~ 10932401 (-)
G27940 NA non-coding downstream 576012 10714630 ~ 10720284 (-)
G27910 NA non-coding downstream 636322 10649898 ~ 10659974 (-)
G27894 lrtm2a,lrtm2,LOC107738823,LOC107590570,LOC107694175,LOC107732983 non-coding downstream 733524 10446435 ~ 10562772 (-)
LOC122343274 NA non-coding upstream 320212 11618450 ~ 11648423 (-)
G28029 NA non-coding upstream 387494 11685732 ~ 11688800 (-)
G27987 sema3c,LOC107710663,LOC107755880,LOC107680038,LOC107694195 non-coding upstream 482721 11780959 ~ 11804910 (-)
LOC122342677 NA non-coding upstream 496045 11794283 ~ 11820297 (-)
G28033 NA non-coding upstream 500328 11798566 ~ 11815305 (-)
dcp1b dcp1b,LOC107590561,LOC107738825,LOC107733007,LOC107589040,LOC107699046,LOC107694173 other downstream 762753 10524531 ~ 10533543 (-)
cacna2d4a cacna2d4a,cacna2d4,LOC107694142,LOC107738821 other downstream 774047 10484922 ~ 10522249 (-)
zgc:193726 NA other downstream 932730 10355711 ~ 10363566 (-)
uhrf1bp1l uhrf1bp1l,LOC107695888,LOC107744929,LOC107664877,LOC107589017 other downstream 1996117 9271972 ~ 9300179 (-)
klhl42 klhl42 other downstream 2286992 9004260 ~ 9009304 (-)
ppfia2 ppfia2,LOC107694182,LOC107755902,LOC107680027 other upstream 116482 11414720 ~ 11573766 (-)
kmt2e kmt2e,LOC107590817,LOC107590964,LOC107710662 other upstream 355232 11653470 ~ 11683862 (-)
magi2a magi2a,LOC107680009,LOC107755877,LOC107591172,LOC107694149,LOC107590979 other upstream 543727 11841965 ~ 11996639 (-)
G28093 slc35e3,LOC107710682,LOC107556774,LOC107737854 other upstream 716393 12014631 ~ 12015767 (-)
cpm cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712 other upstream 1167374 12465612 ~ 12489181 (-)

Expression


Co-expression Network