slco1e1 (slco1e1,LOC107584713,LOC107716166,LOC107689719,LOC107597035)


Basic Information

Item Value
gene id slco1e1
gene name slco1e1,LOC107584713,LOC107716166,LOC107689719,LOC107597035
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13708792 ~ 13717223 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236233.1
AGAGTGGGGGGGGGGTTGGGATACTACCTCTGCCCATGTCAGATGAATGGCCGCTTGAGGGGTTTCTGACTGGGAGGGGAGAATTAGCCCAAACTAAATCTGAGAGGATTATCAGAATGAAGCAATAGAACAGAAGTTAACCTTTGCCTGCTGCAAGAattggaggattttttttcattagtattttcttttttaattaataaatataagCAAAATGTCTGAGCCTGCTGCAGAGGACAATGGTAAGCCGACCAGCCAACAAAATCTTTGCATTCCAGGAAAAGAGGCCCCAAAGGACCCCCGCTGGTCCAGTCTAAAGATTTTTATTGTGGCCCTTTCCTTCGCCTATTTCTCTAAAACTCTGTGTGGGACCTATATGAAAAGCGCCATCACTCAGATTGAGAGGAGATTTGACCTTTCCAGCTCTGTTGTGGGCCTTATTGATGGCAGTTTTGAGATGGGTAACTTGCTCTTTCTGGCAGTGGTTAGTCATTTTGGGTCAAGACTACACAGGCCACGACTCATAGGGATGGGCTGTTTCCTCATGGCCATTGGCTCAGCGGTTACTGGGCTGCCACACTTTTTCATGCGGCGGTACAAGTACGACACAGTAATAACAGGCTCTCTAAACAAATCTGTCAGTGTATCTCCTTGTCAGCCTCCCGCGGTTTCAAACGATTACTCTTCTAATAACATTGAAACAGATTGCCTGAAGGACCCTGGATCTAGTATGTGGATCTATGTGCTCTTGGGTAACGCTCTCAGAGGAATCGGAGAGACACCAGTCACACCTCTTGGCATATCTTATATCGATGACTTTGCAAAAGCAGAAAACTCagcattttacatttCCTGTCTTCAGACTATTATGCTTCTGGGTCCCATGTTTGGATTCCTACTGGGCTCAATGTGTGCCAAACTGTATGTGGATATTGGATTTGTCAGTGTAGAGAGTGTTACCATCACTCCACAGGATGCACGCTGGGTGGGAGCTTGGTGGCTGGGCTTCTTTGTGTCATCTGCTATCTTAGTACTTGCTGGTGTTCCTTTTTGGTTCCTACCCAGGTCTTTACCCAAACAAGGAGAGGAAGGGAAGGAAAACTCTAGTGCGGATCGGGACAACAAGGATCAATCTGTcctcccaaacacacactcagtgaAACTGTCCGACATCGCAAAAGGATTCCTGCCTTCCCTGAAAAAACTCCTGTGCACTCCTGCATACTTCCTGTTGCTTTGTGGGATTGTTTTGAAGTTCAACTCTTTCATCGGCTTGCTCACCTTCAAAGCCAAATACATGGAACAACAGTTTGGCCAGTCTGCTTCAAGAGCAAACTTCCTTATTGGTGTCCTGATCCTGCCTGTGGTCGCTGTGGGAATATTCTTGGGTGGTTTGTTAATGAAAAGATACAAGTTGAGCGTCGTGGCAGGGGCTCAGCTCTCCTTCATCACCTCCTTCACggccttcctcctcctcctcctccatttCGGCACAAAGTGTGAGAATGTGCCTGTGGCAGGGCTCACTGTGTCCTACAATGGGACCCCTGAAATATCTCATGATGAGCGCTCACTCATGTCTCAGTGTAACCAGGACTGTTCCTGCTCTGCATCTGAATGGGATCCCGTGTGCTCTGACAGTGGCATTACATATGTGTCACCCTGTTTGGCAGGATGCACCTCCTCCACTGGACAAGGCAAAAACATGGTTTTTCAAAACTGCAGCTGTGTGTTAACCCCCTCACCAGTAGAGGGCAGCAGATCTGTGTCTCTGGGACAGTGTCCCCGTGGGCCAGGATGTACCCGGAGTTTCACCTCTTACATGGCAGTTTCTGTCCTCAGCTCCTTCATCAACTCTCTGGGCACAACTCCTGGATACATGATCATTATACGATGCATTAAACCTGAGCTTAAGTCACTGGCGTTGGGTATTCAAACGCTTGTGATGCGAACGCTAGGTGGTATTCCTGCTCCTGTATATTTTGGAGCTCTCATTGACTCAACGTGTTTAAAATGGGGGATAAAGAGCTGTGGGGGCAGAGGAGCCTGTCGTTTGTACGACTCAAATATGTACAGAGTGATCTTCTTGAGCCTGACTACGTGTTTAAGTGGATGTTCGTACTTCTTCATCATTGCTGTCATTGTGCTTCTGCGGAAGCAGTTTAGAAAAGAAGAAGTCAAAACATTGCATCAAACAACCAGAAAGCAAAATGAAACCGAACTTCAGTCTCCGGATATGTGCCGTCCTGATGGATCCAAAACCGATACCGTTCCCAGAGAAAAAACAGAGAACACCAATACTGAATGCTAGCGATGAGCTATTTAGTAGTTCTTTCAGGGAATTTAGGAGACAGTGCTGATACTGTAAATTAATGGATGAAGaactactaataaaaacaatgaccaGGGCTGCGGTTCCCAAAAGTAAGCCTAAGCTGATGGTAGCTCCATTGGTTTCAATGGGTCTATGATGTACTTAAGGTTATGGTTCTTTTGGGAATACAGCCCTGGAAAACAGACTATAAAGAAACCAGCGCAAGCCATAACACTCTTTAGGCACTATCGTACTATGTGTTCATGGTCCAGAGTTTGTACAGTATCTCTTAATAAATCTCAGTTCTTTTA
>XM_043236234.1
ATGAATGGCCGCTTGAGGGGTTTCTGACTGGGAGGGGAGAATTAGCCCAAACTAAATCTGAGAGGATTATCAGAGTAAGTCATGAAAACACATGAAAAAGGCTTTCTGTTTCATGAGATGAAGCAATAGAACAGAAGTTAACCTTTGCCTGCTGCAAGAattggaggattttttttcattagtattttcttttttaattaataaatataagCAAAATGTCTGAGCCTGCTGCAGAGGACAATGGTAAGCCGACCAGCCAACAAAATCTTTGCATTCCAGGAAAAGAGGCCCCAAAGGACCCCCGCTGGTCCAGTCTAAAGATTTTTATTGTGGCCCTTTCCTTCGCCTATTTCTCTAAAACTCTGTGTGGGACCTATATGAAAAGCGCCATCACTCAGATTGAGAGGAGATTTGACCTTTCCAGCTCTGTTGTGGGCCTTATTGATGGCAGTTTTGAGATGGGTAACTTGCTCTTTCTGGCAGTGGTTAGTCATTTTGGGTCAAGACTACACAGGCCACGACTCATAGGGATGGGCTGTTTCCTCATGGCCATTGGCTCAGCGGTTACTGGGCTGCCACACTTTTTCATGCGGCGGTACAAGTACGACACAGTAATAACAGGCTCTCTAAACAAATCTGTCAGTGTATCTCCTTGTCAGCCTCCCGCGGTTTCAAACGATTACTCTTCTAATAACATTGAAACAGATTGCCTGAAGGACCCTGGATCTAGTATGTGGATCTATGTGCTCTTGGGTAACGCTCTCAGAGGAATCGGAGAGACACCAGTCACACCTCTTGGCATATCTTATATCGATGACTTTGCAAAAGCAGAAAACTCagcattttacatttCCTGTCTTCAGACTATTATGCTTCTGGGTCCCATGTTTGGATTCCTACTGGGCTCAATGTGTGCCAAACTGTATGTGGATATTGGATTTGTCAGTGTAGAGAGTGTTACCATCACTCCACAGGATGCACGCTGGGTGGGAGCTTGGTGGCTGGGCTTCTTTGTGTCATCTGCTATCTTAGTACTTGCTGGTGTTCCTTTTTGGTTCCTACCCAGGTCTTTACCCAAACAAGGAGAGGAAGGGAAGGAAAACTCTAGTGCGGATCGGGACAACAAGGATCAATCTGTcctcccaaacacacactcagtgaAACTGTCCGACATCGCAAAAGGATTCCTGCCTTCCCTGAAAAAACTCCTGTGCACTCCTGCATACTTCCTGTTGCTTTGTGGGATTGTTTTGAAGTTCAACTCTTTCATCGGCTTGCTCACCTTCAAAGCCAAATACATGGAACAACAGTTTGGCCAGTCTGCTTCAAGAGCAAACTTCCTTATTGGTGTCCTGATCCTGCCTGTGGTCGCTGTGGGAATATTCTTGGGTGGTTTGTTAATGAAAAGATACAAGTTGAGCGTCGTGGCAGGGGCTCAGCTCTCCTTCATCACCTCCTTCACggccttcctcctcctcctcctccatttCGGCACAAAGTGTGAGAATGTGCCTGTGGCAGGGCTCACTGTGTCCTACAATGGGACCCCTGAAATATCTCATGATGAGCGCTCACTCATGTCTCAGTGTAACCAGGACTGTTCCTGCTCTGCATCTGAATGGGATCCCGTGTGCTCTGACAGTGGCATTACATATGTGTCACCCTGTTTGGCAGGATGCACCTCCTCCACTGGACAAGGCAAAAACATGGTTTTTCAAAACTGCAGCTGTGTGTTAACCCCCTCACCAGTAGAGGGCAGCAGATCTGTGTCTCTGGGACAGTGTCCCCGTGGGCCAGGATGTACCCGGAGTTTCACCTCTTACATGGCAGTTTCTGTCCTCAGCTCCTTCATCAACTCTCTGGGCACAACTCCTGGATACATGATCATTATACGATGCATTAAACCTGAGCTTAAGTCACTGGCGTTGGGTATTCAAACGCTTGTGATGCGAACGCTAGGTGGTATTCCTGCTCCTGTATATTTTGGAGCTCTCATTGACTCAACGTGTTTAAAATGGGGGATAAAGAGCTGTGGGGGCAGAGGAGCCTGTCGTTTGTACGACTCAAATATGTACAGAGTGATCTTCTTGAGCCTGACTACGTGTTTAAGTGGATGTTCGTACTTCTTCATCATTGCTGTCATTGTGCTTCTGCGGAAGCAGTTTAGAAAAGAAGAAGTCAAAACATTGCATCAAACAACCAGAAAGCAAAATGAAACCGAACTTCAGTCTCCGGATATGTGCCGTCCTGATGGATCCAAAACCGATACCGTTCCCAGAGAAAAAACAGAGAACACCAATACTGAATGCTAGCGATGAGCTATTTAGTAGTTCTTTCAGGGAATTTAGGAGACAGTGCTGATACTGTAAATTAATGGATGAAGaactactaataaaaacaatgaccaGGGCTGCGGTTCCCAAAAGTAAGCCTAAGCTGATGGTAGCTCCATTGGTTTCAATGGGTCTATGATGTACTTAAGGTTATGGTTCTTTTGGGAATACAGCCCTGGAAAACAGACTATAAAGAAACCAGCGCAAGCCATAACACTCTTTAGGCACTATCGTACTATGTGTTCATGGTCCAGAGTTTGTACAGTATCTCTTAATAAATCTCAGTTCTTTTA
>XM_043236235.1
taaatataagCAAAATGTCTGAGCCTGCTGCAGAGGACAATGGTAAGCCGACCAGCCAACAAAATCTTTGCATTCCAGGAAAAGAGGCCCCAAAGGACCCCCGCTGGTCCAGTCTAAAGGTAACTTGCTCTTTCTGGCAGTGGTTAGTCATTTTGGGTCAAGACTACACAGGCCACGACTCATAGGGATGGGCTGTTTCCTCATGGCCATTGGCTCAGCGGTTACTGGGCTGCCACACTTTTTCATGCGGCGGTACAAGTACGACACAGTAATAACAGGCTCTCTAAACAAATCTGTCAGTGTATCTCCTTGTCAGCCTCCCGCGGTTTCAAACGATTACTCTTCTAATAACATTGAAACAGATTGCCTGAAGGACCCTGGATCTAGTATGTGGATCTATGTGCTCTTGGGTAACGCTCTCAGAGGAATCGGAGAGACACCAGTCACACCTCTTGGCATATCTTATATCGATGACTTTGCAAAAGCAGAAAACTCagcattttacatttCCTGTCTTCAGACTATTATGCTTCTGGGTCCCATGTTTGGATTCCTACTGGGCTCAATGTGTGCCAAACTGTATGTGGATATTGGATTTGTCAGTGTAGAGAGTGTTACCATCACTCCACAGGATGCACGCTGGGTGGGAGCTTGGTGGCTGGGCTTCTTTGTGTCATCTGCTATCTTAGTACTTGCTGGTGTTCCTTTTTGGTTCCTACCCAGGTCTTTACCCAAACAAGGAGAGGAAGGGAAGGAAAACTCTAGTGCGGATCGGGACAACAAGGATCAATCTGTcctcccaaacacacactcagtgaAACTGTCCGACATCGCAAAAGGATTCCTGCCTTCCCTGAAAAAACTCCTGTGCACTCCTGCATACTTCCTGTTGCTTTGTGGGATTGTTTTGAAGTTCAACTCTTTCATCGGCTTGCTCACCTTCAAAGCCAAATACATGGAACAACAGTTTGGCCAGTCTGCTTCAAGAGCAAACTTCCTTATTGGTGTCCTGATCCTGCCTGTGGTCGCTGTGGGAATATTCTTGGGTGGTTTGTTAATGAAAAGATACAAGTTGAGCGTCGTGGCAGGGGCTCAGCTCTCCTTCATCACCTCCTTCACggccttcctcctcctcctcctccatttCGGCACAAAGTGTGAGAATGTGCCTGTGGCAGGGCTCACTGTGTCCTACAATGGGACCCCTGAAATATCTCATGATGAGCGCTCACTCATGTCTCAGTGTAACCAGGACTGTTCCTGCTCTGCATCTGAATGGGATCCCGTGTGCTCTGACAGTGGCATTACATATGTGTCACCCTGTTTGGCAGGATGCACCTCCTCCACTGGACAAGGCAAAAACATGGTTTTTCAAAACTGCAGCTGTGTGTTAACCCCCTCACCAGTAGAGGGCAGCAGATCTGTGTCTCTGGGACAGTGTCCCCGTGGGCCAGGATGTACCCGGAGTTTCACCTCTTACATGGCAGTTTCTGTCCTCAGCTCCTTCATCAACTCTCTGGGCACAACTCCTGGATACATGATCATTATACGATGCATTAAACCTGAGCTTAAGTCACTGGCGTTGGGTATTCAAACGCTTGTGATGCGAACGCTAGGTGGTATTCCTGCTCCTGTATATTTTGGAGCTCTCATTGACTCAACGTGTTTAAAATGGGGGATAAAGAGCTGTGGGGGCAGAGGAGCCTGTCGTTTGTACGACTCAAATATGTACAGAGTGATCTTCTTGAGCCTGACTACGTGTTTAAGTGGATGTTCGTACTTCTTCATCATTGCTGTCATTGTGCTTCTGCGGAAGCAGTTTAGAAAAGAAGAAGTCAAAACATTGCATCAAACAACCAGAAAGCAAAATGAAACCGAACTTCAGTCTCCGGATATGTGCCGTCCTGATGGATCCAAAACCGATACCGTTCCCAGAGAAAAAACAGAGAACACCAATACTGAATGCTAGCGATGAGCTATTTAGTAGTTCTTTCAGGGAATTTAGGAGACAGTGCTGATACTGTAAATTAATGGATGAAGaactactaataaaaacaatgaccaGGGCTGCGGTTCCCAAAAGTAAGCCTAAGCTGATGGTAGCTCCATTGGTTTCAATGGGTCTATGATGTACTTAAGGTTATGGTTCTTTTGGGAATACAGCCCTGGAAAACAGACTATAAAGAAACCAGCGCAAGCCATAACACTCTTTAGGCACTATCGTACTATGTGTTCATGGTCCAGAGTTTGTACAGTATCTCTTAATAAATCTCAGTTCTTTTA

Function

symbol description
slco1e1 Predicted to enable sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in sodium-independent organic anion transport. Predicted to act upstream of or within organic anion transport and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; gill; and skeletal muscle. Human ortholog(s) of this gene implicated in bilirubin metabolic disorder. Orthologous to human SLCO1B1 (solute carrier organic anion transporter family member 1B1); SLCO1B3 (solute carrier organic anion transporter family member 1B3); and SLCO1B7 (solute carrier organic anion transporter family member 1B7 (putative)).

NR:

description
PREDICTED: solute carrier organic anion transporter family member 1C1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236233.1 False 2625 mRNA 0.46 17 13708792 13717223
XM_043236234.1 True 2626 mRNA 0.45 16 13708792 13717095
XM_043236235.1 False 2283 mRNA 0.46 14 13708792 13716767

Neighbor

gene id symbol gene type direction distance location
LOC122343398 LOC107726825,LOC107584742,LOC107689735 coding downstream 713 13702383 ~ 13708079 (-)
LOC122343316 NA coding downstream 21152 13683225 ~ 13687640 (-)
pyroxd1 pyroxd1,ryroxd1,LOC107597005,LOC107584714,LOC107689253,LOC107689716 coding downstream 29704 13674271 ~ 13679088 (-)
LOC122343493 LOC107726837,LOC107748473,LOC107689714,LOC107584715 coding downstream 43655 13652525 ~ 13665137 (-)
slc6a1l LOC107597007,LOC107584717,LOC107689715,LOC107748475,LOC107689236,LOC108427058,LOC105916091 coding downstream 60743 13635613 ~ 13648049 (-)
slco1d1 LOC107689241,LOC107597003,LOC107584712,LOC107689720,LOC107689242,LOC107726840 coding upstream 1381 13718604 ~ 13729434 (-)
LOC122342857 LOC107689242,LOC107584712 coding upstream 19382 13736605 ~ 13748988 (-)
LOC122342931 LOC107689242,LOC107689241,LOC107584712,LOC107689720,LOC107597003 coding upstream 33611 13750834 ~ 13760856 (-)
LOC122343235 LOC107689737,LOC107716193,LOC107689255,LOC107584741,LOC107716201 coding upstream 46167 13763390 ~ 13784708 (-)
LOC122342633 NA coding upstream 253041 13970264 ~ 13975630 (-)
G28434 iqsec3,LOC107689235,LOC106609634,LOC107689713 non-coding downstream 96021 13610216 ~ 13612771 (-)
LOC122342564 NA non-coding downstream 364535 13343726 ~ 13344257 (-)
G28377 NA non-coding downstream 389044 13311873 ~ 13319748 (-)
G28359 NA non-coding downstream 456758 13250651 ~ 13252034 (-)
G28353 NA non-coding downstream 463404 13242506 ~ 13245388 (-)
G28545 LOC107689243,LOC107689721,LOC107726844,LOC107569223,LOC107566846 non-coding upstream 103473 13820696 ~ 13827052 (-)
G28564 NA non-coding upstream 149554 13866777 ~ 13867298 (-)
G28544 NA non-coding upstream 152199 13869422 ~ 13870614 (-)
G28568 NA non-coding upstream 162808 13880031 ~ 13880847 (-)
G28569 NA non-coding upstream 164082 13881305 ~ 13882012 (-)
LOC122343399 LOC107726825,LOC107689735,LOC107584742 other downstream 10077 13692471 ~ 13698715 (-)
G28397 vezt,metap2,metap2a,LOC107755144,LOC107689227,LOC107597031,LOC107667718,LOC107755160,LOC107689230,LOC107597011 other downstream 276089 13411624 ~ 13432703 (-)
tmcc3 tmcc3,LOC107689246,LOC107667715 other downstream 346854 13316932 ~ 13361938 (-)
tmem110l tmem110l,LOC107597025,LOC107748459,LOC107675974,LOC107555827,LOC107666935 other downstream 521902 13176961 ~ 13186890 (-)
cpm cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712 other downstream 1219611 12465612 ~ 12489181 (-)
LOC122343280 NA other upstream 98351 13815574 ~ 13831851 (-)
G28575 alg10,LOC107726832,LOC107689747,LOC107721156,LOC107666210,LOC107600015,LOC107569225 other upstream 258134 13975357 ~ 13980559 (-)
cerk cerk,LOC107710741,LOC107689729,LOC107552286,LOC107600034,LOC107721152 other upstream 438269 14155492 ~ 14176742 (-)
LOC122342862 celsr1a,LOC107666207,LOC107710744,LOC107569230,LOC107721151,LOC107600014,LOC107689740 other upstream 970650 14687873 ~ 14704622 (-)
LOC122342642 pfkfb3 other upstream 1091320 14808543 ~ 14810711 (-)

Expression


Co-expression Network