lrrc17 (lrrc17,LOC107738820,LOC107694168,LOC107591338,LOC107699038,LOC107557290)


Basic Information

Item Value
gene id lrrc17
gene name lrrc17,LOC107738820,LOC107694168,LOC107591338,LOC107699038,LOC107557290
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 10423932 ~ 10433495 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236238.1
CCTGCACGGAGATGCAACGTGTAATTTAAAACCAGGCACAAGCTTGGGGGCTGCACtgagcctcacacacacatatgctcatgcacatacacacacgcatacagtcAGATCGCTGAGTTCAGGCAGCCAGCTCCGCACAAAGCTCATGACAGGACCTAAAGATCAGCTAACAGGACATATCCAGATTGGATTTCGGATGTATTTCCCTGTGCACAGGGACTGCAGCTGTGCCCCCTCACTCTGACTAAAGCTAGCTCTCGGGTTAAACAACGTTTCGCTGAGACTCTACTTGACTGGTTAGCCCAGCTGCTGCTGTTTGCCATGCGGCTGCTCTGCggtctgctgctgctgctgtgccTGGTGGTCTGGGCAACTGAGGCACGAAAGGGTGGAAAGGGACGCCGAATGCGGAGTCGGGATCGGTCAAGTACCACCAAGCGGTTTGCTGCAGACTGCAAGGAAAGTACAGCCAATGGGGAAAAGTTCTTTGACTGCCAAGATCGCCATCTGACAGCCGTACTATCGGGCTGGCCGGAGGACATTCACCACCTGCTGCTAGCTCGGAACCGGATCCAGGTGCTGCGAGACAACACCTTCAGTCAATTCCGAAACCTAAAAAGTCTGGATCTCCAGCAGAATGAAATCTCCCGCATAGAGGAGGGAGCGTTCAACGGCCTGAGCAGACTCACCACTTTACTGCTGCAGCACAACCGTCTGCAGGTGGCCAGCGAAGGCATGCTGATCCCAATGCCGCAACTCAAGTACTTGCGACTCCATGACAATCCCTGGTGGTGTGACTGCCAGCTGGACAGCCTGGTCAGGTTCATACAAGTGCCCAGTAACCGTAACATCGGTAATTACGCACGCTGTGCTGAGCCCAGGGATTTCTGGGGGAGGCAACTGAAGAAGCTGGATGCAGAGCTTCTGTGTACTCCTCAGCAAGAGAACGTATTGATCCCAATATATCATCCAGACAATCAGTCCCTACCagctccacaaaaaaaaaatgacgcAACCTCTCTATGCCACACTTACATGCACCCTGTGCCACGCCTGGACTGCAGGAACCGAGACCTTAAAACAGTGCCGGCTGACATCTCGTTGGACATTGTGAGACTGGATTTATCCAGAAACAACATCAAGCAGCTGAGACCAAAGGAGTTTGTAAACGTTAAAGACCTCAAGCTCTTGAACCTGAGCGGAAACAGTCTGGAAAGCATTGACACAGCTGCCTTTACAGGCCTGCTGTACTTAGGAGAATTGGATCTGTCCAACAACAGCCTGCGCTATTTTCAATATGGCGTTCTGGAGGACCTCTACTTCCTGAAAAAACTGTCTCTGGAGGACAACCCCTGGATTTGTGATTACAACATTCATTACTTGATCTATTGGCTGAAGCACCACCCCGGTGTGTCCCACACAGGTCTGGTGTGCAGTGAACCAGAGGAGTTTCGTGGTTGGCCGGTGGAAAACTACGTCAAGACCTACAACGCAGACTGTCCTAAAGACAAGCAGCTGGGCCAGGTGCCTGGCACTGACCCGGCAGGCATCACAGCTCAGGAGCTCACAGCTGAGATAGATGAAGAGGAGCTGTTTTCAGACTTGGGGCCCAGACCTTACAGAGGGCCGAAGAAATTTGAGATCATCCGTCTGACTTAAGATGGAAACTGTGATGCTGTTgggaactcttttttttttattttgtcatgaacaaatcattttccCAGCAAAATTCTGAGCGAGAGATGAAACTTTAATATGCTGTCACATTTGCTGAACAGTTCAGTTCAAGCCGAAATCGAGCAGTTGATGTTTACGTATTTTTTAGTATTTCTAACGAGTAATTTTGTAAATTGAATcatgataaataaaattgtttgatttggg

Function

symbol description
lrrc17 Predicted to enable Roundabout binding activity and heparin binding activity. Predicted to be involved in axon guidance and negative chemotaxis. Is expressed in several structures, including digestive system; epidermis; mesenchyme derived from head mesoderm; musculature system; and tail bud. Orthologous to human LRRC17 (leucine rich repeat containing 17).

NR:

description
PREDICTED: leucine-rich repeat-containing protein 17-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236238.1 True 1887 mRNA 0.50 4 10423932 10433495

Neighbor

gene id symbol gene type direction distance location
cep83 LOC107694167,LOC107738819,LOC107591083,LOC107699054 coding downstream 2771 10414195 ~ 10421161 (-)
si:dkey-159a18.1 LOC107694153,LOC107591329,LOC107738834,LOC107699055 coding downstream 10197 10404599 ~ 10413735 (-)
fam3c fam3c,LOC107738818,LOC107694166,LOC107699057,LOC107733009 coding downstream 20174 10398091 ~ 10403758 (-)
dennd6b dennd6b,LOC107738816,LOC107590515,LOC107694164,LOC107732989,LOC107557304 coding downstream 42217 10373628 ~ 10381715 (-)
atp6v1f atp6v1f,LOC107590479,LOC101079638,LOC107557307,LOC106511462 coding downstream 58348 10364105 ~ 10365584 (-)
LOC122342631 NA coding upstream 13150 10446645 ~ 10448364 (-)
fgl2a fgl2a,LOC107694171,LOC107590533,LOC107557300,LOC107733002,LOC107699052 coding upstream 15344 10448839 ~ 10451807 (-)
LOC122342626 gsap,LOC107733001,LOC107699053,LOC107557299,LOC107694141,LOC107591096 coding upstream 30266 10463761 ~ 10476981 (-)
stk38l stk38l,LOC107738822,LOC107590537,LOC107694172,LOC107699048 coding upstream 43718 10477213 ~ 10484101 (-)
napepld napepld,LOC107738826,LOC107694176 coding upstream 204288 10637783 ~ 10645759 (-)
G27883 NA non-coding downstream 34127 10389447 ~ 10389805 (-)
LOC122343524 NA non-coding downstream 74641 10322734 ~ 10349291 (-)
G27628 lrrc4.1,LOC107557314,LOC107732976,LOC107699068,LOC107738809,LOC108432552 non-coding downstream 285876 10083419 ~ 10138056 (-)
G27627 NA non-coding downstream 408178 10015182 ~ 10015754 (-)
G27581 NA non-coding downstream 679145 9697696 ~ 9744787 (-)
G27894 lrtm2a,lrtm2,LOC107738823,LOC107590570,LOC107694175,LOC107732983 non-coding upstream 12940 10446435 ~ 10562772 (-)
G27910 NA non-coding upstream 216403 10649898 ~ 10659974 (-)
G27940 NA non-coding upstream 281135 10714630 ~ 10720284 (-)
LOC122342624 LOC107694146 non-coding upstream 497102 10930597 ~ 10932401 (-)
G27974 syt1a,LOC107590640,LOC107694178,LOC107734425 non-coding upstream 693007 11126502 ~ 11259483 (-)
zgc:193726 NA other downstream 60366 10355711 ~ 10363566 (-)
uhrf1bp1l uhrf1bp1l,LOC107695888,LOC107744929,LOC107664877,LOC107589017 other downstream 1123753 9271972 ~ 9300179 (-)
klhl42 klhl42 other downstream 1414628 9004260 ~ 9009304 (-)
LOC122343470 LOC107593478,LOC107664836,LOC107744937,LOC108435459,LOC108279443 other downstream 1482529 8892019 ~ 8941403 (-)
th2 pah,th2,LOC107590157,LOC107664872,LOC107587609,LOC107744916,LOC107695848,LOC108437952 other downstream 1549334 8870215 ~ 8874598 (-)
cacna2d4a cacna2d4a,cacna2d4,LOC107694142,LOC107738821 other upstream 51427 10484922 ~ 10522249 (-)
dcp1b dcp1b,LOC107590561,LOC107738825,LOC107733007,LOC107589040,LOC107699046,LOC107694173 other upstream 91036 10524531 ~ 10533543 (-)
ppfia2 ppfia2,LOC107694182,LOC107755902,LOC107680027 other upstream 981225 11414720 ~ 11573766 (-)
kmt2e kmt2e,LOC107590817,LOC107590964,LOC107710662 other upstream 1219975 11653470 ~ 11683862 (-)
magi2a magi2a,LOC107680009,LOC107755877,LOC107591172,LOC107694149,LOC107590979 other upstream 1408470 11841965 ~ 11996639 (-)

Expression


Co-expression Network