yeats4 (yeats4,LOC107555875,LOC107590554,LOC106609801,LOC107717680)


Basic Information

Item Value
gene id yeats4
gene name yeats4,LOC107555875,LOC107590554,LOC106609801,LOC107717680
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 87004 ~ 89152 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236239.1
ACGAAGACGGAGTGCTATGAGAGCTACGTGCTCATGCTTTCTTCACGAAGAAACATGTATGTTGTTCTTAATGGCAGTTCCGTACAATAAATCAGTTCATTTCCGAACTGTACTCTTTTCGTAGAAGCCAATTCGAGTAAAACACTTGACTTTTTGTGTACTATGTTTAAGAGGATGGCTGAATTTGGTCCAGATTCGGGGGGTCGAGTGAAGGGAGTGACTATCGTGAAACCCATAGTGTTTGGAAACGTCGCACGCTATTttggaaagaaaagagaagacgATGGTCACACTCATCAGTGGACAGTTTATGTGAAGCCTTACAGAAATGAGGATATGTCTGCTTatgtcaaaaaaatacaattcaaacTGCATGAAAGTTACGGGAACCCTTTAAGAGTGGTTACGAAGCCTCCATATGAGATTACTGAGACTGGATGGGGAGAGTTTGAGATCATCATAAAGATCTTTTTCATCGATCCAAATGAGAGACCGGTCACACTGTATCACCTGCTGAAGCTCTTCCAGTCAGACTCCAGTGCCATGCCGAAGAAGACCGTTGTGTCCGAGTTCTACGATGAGATGATATTTCAAGACCCTACAGCCATGATGCAACAGCTCCTGAACACCACCAGACAGCTGACTTTGGGGGCCTACAAACACGAGACAGAGTTTGCAGAGCTGGAGGTACGAACACGAGAAAAAGTGGAAGCGGCGAAGAAGAAGACAAGCCTGGAGATTGCAGAGCTGAAGGAGCGACTGAAAGCCTCCAGAGAAAACATCAACTTCCTGAAAGGAGAGATACGCAGACTGGAAGAGGAGGACCAGATGAAGGACCACTGAGGACTTCAGCATCATCACACAGCTGTGAACACTTACTGGGACTGATCACTTCACATTTCAGTAGAGAACAACTATGTGTTGTGCAGTTTTATGTCCAGATCAgcaaaatgtgtgaaaatatgAGACTACCTTTTGAGCTTCTGTAGTTATCACAGAcatgttttgtataaataaacctttttttgttgttgttgtttttttacaaatacaaatattgtctGAT
>XM_043236240.1
TAATTTGAAGTTTGACTCGCAAACGAAGACGGAGTGCTATGAGAGCTACGTGCTCATGCTTTCTTCACGAAGAAACATAGGATGGCTGAATTTGGTCCAGATTCGGGGGGTCGAGTGAAGGGAGTGACTATCGTGAAACCCATAGTGTTTGGAAACGTCGCACGCTATTttggaaagaaaagagaagacgATGGTCACACTCATCAGTGGACAGTTTATGTGAAGCCTTACAGAAATGAGGATATGTCTGCTTatgtcaaaaaaatacaattcaaacTGCATGAAAGTTACGGGAACCCTTTAAGAGTGGTTACGAAGCCTCCATATGAGATTACTGAGACTGGATGGGGAGAGTTTGAGATCATCATAAAGATCTTTTTCATCGATCCAAATGAGAGACCGGTCACACTGTATCACCTGCTGAAGCTCTTCCAGTCAGACTCCAGTGCCATGCCGAAGAAGACCGTTGTGTCCGAGTTCTACGATGAGATGATATTTCAAGACCCTACAGCCATGATGCAACAGCTCCTGAACACCACCAGACAGCTGACTTTGGGGGCCTACAAACACGAGACAGAGTTTGCAGAGCTGGAGGTACGAACACGAGAAAAAGTGGAAGCGGCGAAGAAGAAGACAAGCCTGGAGATTGCAGAGCTGAAGGAGCGACTGAAAGCCTCCAGAGAAAACATCAACTTCCTGAAAGGAGAGATACGCAGACTGGAAGAGGAGGACCAGATGAAGGACCACTGAGGACTTCAGCATCATCACACAGCTGTGAACACTTACTGGGACTGATCACTTCACATTTCAGTAGAGAACAACTATGTGTTGTGCAGTTTTATGTCCAGATCAgcaaaatgtgtgaaaatatgAGACTACCTTTTGAGCTTCTGTAGTTATCACAGAcatgttttgtataaataaacctttttttgttgttgttgtttttttacaaatacaaatattgtctGAT
>XM_043236241.1
ACGAAGACGGAGTGCTATGAGAGCTACGTGCTCATGCTTTCTTCACGAAGAAACATGTATGTTGTTCTTAATGGCAGTTCCGTACAATAAATCAGTTCATTTCCGAACTGTACTCTTTTCGTAGAAGCCAATTCGAGTAAAACACTTGACTTTTTGTGTACTATGTTTAAGAGGATGGCTGAATTTGGTCCAGATTCGGGGGGTCGAGTGAAGGGAGTGACTATCGTGAAACCCATAGTGTTTGGAAACGTCGCACGCTATTttggaaagaaaagagaagacgATGGTCACACTCATCAGTGGACAGTTTATGTGAAGCCTTACAGAAATGAGGTCACACTGTATCACCTGCTGAAGCTCTTCCAGTCAGACTCCAGTGCCATGCCGAAGAAGACCGTTGTGTCCGAGTTCTACGATGAGATGATATTTCAAGACCCTACAGCCATGATGCAACAGCTCCTGAACACCACCAGACAGCTGACTTTGGGGGCCTACAAACACGAGACAGAGTTTGCAGAGCTGGAGGTACGAACACGAGAAAAAGTGGAAGCGGCGAAGAAGAAGACAAGCCTGGAGATTGCAGAGCTGAAGGAGCGACTGAAAGCCTCCAGAGAAAACATCAACTTCCTGAAAGGAGAGATACGCAGACTGGAAGAGGAGGACCAGATGAAGGACCACTGAGGACTTCAGCATCATCACACAGCTGTGAACACTTACTGGGACTGATCACTTCACATTTCAGTAGAGAACAACTATGTGTTGTGCAGTTTTATGTCCAGATCAgcaaaatgtgtgaaaatatgAGACTACCTTTTGAGCTTCTGTAGTTATCACAGAcatgttttgtataaataaacctttttttgttgttgttgtttttttacaaatacaaatattgtctGAT

Function

symbol description
yeats4 Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human YEATS4 (YEATS domain containing 4).

NR:

description
PREDICTED: YEATS domain-containing protein 4

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K11341 YEATS4, GAS41, YAF9; YEATS domain-containing protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236239.1 True 1066 mRNA 0.43 7 87026 89152
XM_043236240.1 False 973 mRNA 0.44 8 87004 89152
XM_043236241.1 False 904 mRNA 0.44 5 87026 89152

Neighbor

gene id symbol gene type direction distance location
LOC122343428 lmod2b,LOC107726005,LOC107584027,LOC107656401,LOC107581005,LOC107711505 coding upstream 69100 13818 ~ 17904 (+)
LOC122343427 asb15b,LOC107726003,LOC107658939,LOC107583946,LOC107656400,LOC107581016,LOC107711503 coding upstream 73886 9542 ~ 13118 (+)
frs2a frs2,frs2a,LOC107658966,LOC107590545,LOC107729158 coding downstream 1056 90208 ~ 107305 (+)
glipr1a NA coding downstream 105940 195092 ~ 199536 (+)
LOC122343357 LOC107658963,LOC107708011,LOC107555883 coding downstream 116353 205505 ~ 213159 (+)
zdhhc17 zdhhc17,LOC107708015,LOC107658960,LOC107656450 coding downstream 254440 343592 ~ 360922 (+)
LOC122342832 NA coding downstream 771444 860596 ~ 863551 (+)
G24554 LOC107729149,LOC108279496,LOC107555887,LOC107708007 non-coding upstream 416 85235 ~ 86588 (+)
G24553 NA non-coding upstream 4481 75388 ~ 82523 (+)
G24558 wasl,LOC107583945 non-coding upstream 61108 24544 ~ 25896 (+)
G24567 NA non-coding downstream 27047 116199 ~ 116891 (+)
G24586 NA non-coding downstream 126823 215975 ~ 281984 (+)
G24587 NA non-coding downstream 153414 242566 ~ 282841 (+)
G24593 phlda1,LOC107708012,LOC107658781,LOC107656271,LOC107729151 non-coding downstream 161020 250172 ~ 252374 (+)
G24594 NA non-coding downstream 164113 253265 ~ 315566 (+)
G24555 cpsf6 other upstream 2042 83688 ~ 84962 (+)
cmah cmah,LOC107555874,LOC107729160,LOC107656456,LOC107590555 other downstream 95564 184716 ~ 194183 (+)
G24609 NA other downstream 204083 293235 ~ 295069 (+)
G24632 LOC107584022 other downstream 284375 373527 ~ 374082 (+)
gpr22a gpr22a,LOC107658958,LOC107583929,LOC107729153,LOC107708019,LOC107590528,LOC107656448 other downstream 345191 434343 ~ 439352 (+)
G24771 plekha5,LOC107584023,LOC107658747 other downstream 564940 654092 ~ 665530 (+)

Expression


Co-expression Network